Sébastien Hergalant

Identifiants chercheurs

IdHAL :

sebastien-hergalant

ORCID :

0000-0001-8456-7992

ResearcherID :

http://www.researcherid.com/rid/G-8129-2018

Publications

Article dans une revue (43)

SIRT1 mediates brain metabolic and developmental consequences of methionine synthase deficiency in inborn errors of cobalamin metabolism Karim Matmat,Ziad Hassan,Grégory Pourié,Yaser Atlasi,Snehaa Vivienne Sealet al. Cell Reports Medicine, 2026, 7 (3), pp.102643. ⟨10.1016/j.xcrm.2026.102643⟩ Article dans une revue hal-05553661v1
Differential Clinical and Immunological Impacts of Anti–T‐Lymphocyte Globulin ( ATLG ) vs. Anti‐Thymocyte Globulin ( ATG ) in Preventing Graft‐Versus‐Host Disease Post‐Allogeneic Hematopoietic Stem Cell Transplantation: A Comparative Study Anne-Béatrice Notarantonio,Stéphane Morisset,Romain Piucco,Michaël Pérès,Laura Boulangéet al. American Journal of Hematology, 2025, 100 (4), pp.626-637. ⟨10.1002/ajh.27619⟩ Article dans une revue hal-04962204v1
adverSCarial: assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks Ghislain Fievet,Julien Broséus,David Meyre,Sébastien Hergalant Bioinformatics, 2025, 41 (4), pp.btaf168. ⟨10.1093/bioinformatics/btaf168⟩ Article dans une revue hal-05036098v1
B3GALT6 mutations lead to compromised connective tissue biomechanics in Ehlers-Danlos syndrome Roméo Milan Diana,Benjamin Jolivet,Jean-Baptiste Vincourt,Sébastien Hergalant,Grégory Franciuset al. JCI Insight, 2025, 10 (16), pp.e179474. ⟨10.1172/jci.insight.179474⟩ Article dans une revue hal-05234907v1
Multiomic analysis in fibroblasts of patients with inborn errors of cobalamin metabolism reveals concordance with clinical and metabolic variability Arnaud Wiedemann,Abderrahim Oussalah,Rosa-Maria Guéant-Rodriguez,Elise Jeannesson,Marc Mertenet al. EBioMedicine, 2024, 99, pp.104911. ⟨10.1016/j.ebiom.2023.104911⟩ Article dans une revue hal-04962224v1
DNA Methylation Profiling Reveals Multiple Hits in MAPK Pathway in Triple Negative MDS/MPN with SF3B1 Mutation and Thrombocytosis Marion Divoux,Ghislain Fievet,Natacha Dreumont,Laurence Schenone,Maud d'Aveniet al. Blood, 2024, 144 (Supplement 1), pp.3174. ⟨10.1182/blood-2024-202925⟩ Article dans une revue hal-05000101v1
Unraveling Immunogenomic Features Germane to Pathobiology of Myelodysplastic Syndromes Arda Durmaz,Zachary Brady,Kartik Lakhotiya,Benjamin Kroger,Hussein Awadaet al. Blood, 2024, 144 (Supplement 1), pp.2224. ⟨10.1182/blood-2024-198530⟩ Article dans une revue hal-05000125v1
Correction: A transgenic mice model of retinopathy of cblG‑type inherited disorder of one‑carbon metabolism highlights epigenome‑wide alterations related to cone photoreceptor cells development and retinal metabolism Karim Matmat,Jean-Baptiste Conart,Paul-Henri Graindorge,Sandra El Kouche,Ziad Hassanet al. Clinical Epigenetics, 2024, 16 (1), pp.23. ⟨10.1186/s13148-024-01636-8⟩ Article dans une revue hal-04576854v1
Highly immunosuppressive myeloid cells correlate with early relapse after allogeneic stem cell transplantation Anne-Béatrice Notarantonio,Allan Bertrand,Romain Piucco,Ghislain Fievet,Hervé Sarteletet al. Experimental Hematology & Oncology, 2024, 13 (1), pp.50. ⟨10.1186/s40164-024-00516-4⟩ Article dans une revue hal-04576863v1
Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome Erin Parry,Ignaty Leshchiner,Romain Guièze,Connor Johnson,Eugen Tauschet al. Nature Medicine, 2023, 29 (1), pp.158-169. ⟨10.1038/s41591-022-02113-6⟩ Article dans une revue hal-03950358v1
Molecular landscape of immune pressure and escape in aplastic anemia Simona Pagliuca,Carmelo Gurnari,Colin Hercus,Sébastien Hergalant,Niroshan Nadarajahet al. Leukemia, 2023, 37 (1), pp.202-211. ⟨10.1038/s41375-022-01723-w⟩ Article dans une revue hal-03950335v1
In vivo modeling of CLL transformation to Richter’s syndrome reveals convergent evolutionary paths and therapeutic vulnerabilities Elisa ten Hacken,Tomasz Sewastianik,Shanye Yin,Gabriela Brunsting Hoffmann,Michaela Gruberet al. Blood Cancer Discovery, 2023, 4 (2), pp.150-169. ⟨10.1158/2643-3230.BCD-22-0082⟩ Article dans une revue hal-03950340v1
MicroRNAs miR-16 and miR-519 control meningioma cell proliferation via overlapping transcriptomic programs shared with the RNA-binding protein HuR Sébastien Hergalant,Jean-Matthieu Casse,Abderrahim Oussalah,Rémi Houlgatte,Deborah Helleet al. Frontiers in Oncology, 2023, 13, pp.1158773. ⟨10.3389/fonc.2023.1158773⟩ Article dans une revue hal-04176105v1
Leukemia relapse via genetic immune escape after allogeneic hematopoietic cell transplantation Simona Pagliuca,Carmelo Gurnari,Colin Hercus,Sébastien Hergalant,Sanghee Honget al. Nature Communications, 2023, 14 (1), pp.3153. ⟨10.1038/s41467-023-38113-4⟩ Article dans une revue hal-04162108v1
ZNF683 marks a CD8+ T cell population associated with anti-tumor immunity following anti-PD-1 therapy for Richter syndrome Erin Parry,Camilla Lemvigh,Stephanie Deng,Nathan Dangle,Neil Ruthenet al. Cancer Cell, 2023, 41 (10), pp.1803-1816.e8. ⟨10.1016/j.ccell.2023.08.013⟩ Article dans une revue hal-04253414v1
Molecular characterization of Richter syndrome identifies de novo diffuse large B-cell lymphomas with poor prognosis Julien Broséus,Sébastien Hergalant,Julia Vogt,Eugen Tausch,Markus Kreuzet al. Nature Communications, 2023, 14 (1), pp.309. ⟨10.1038/s41467-022-34642-6⟩ Article dans une revue hal-03950368v1
A high MCM6 proliferative index in atypical meningioma is associated with shorter progression free and overall survivals Guillaume Gauchotte,Charles Bédel,Emilie Lardenois,Sébastien Hergalant,Laura Cugliettaet al. Cancers, 2023, 15 (2), pp.535. ⟨10.3390/cancers15020535⟩ Article dans une revue hal-03950329v1
Somatic and Germline HLA Determinants of Immune Surveillance and Escape in Myelodysplastic Syndromes Carmelo Gurnari,Arda Durmaz,Benjamin Kroger,Hussein Awada,Jacky Chenet al. Blood, 2023, 142 (Supplement 1), pp.3220. ⟨10.1182/blood-2023-178890⟩ Article dans une revue hal-04320855v1
ALDH1L2 Knockout in U251 Glioblastoma Cells Reduces Tumor Sphere Formation by Increasing Oxidative Stress and Suppressing Methionine Dependency Maëlle Quéré,Jean-Marc Alberto,Franck Broly,Sébastien Hergalant,Christo Christovet al. Nutrients, 2022, 14 (9), pp.1887. ⟨10.3390/nu14091887⟩ Article dans une revue hal-03664166v1
Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B12 Abderrahim Oussalah,Youssef Siblini,Sébastien Hergalant,Céline Chéry,Pierre Rouyeret al. Clinical Epigenetics, 2022, 14 (1), pp.52. ⟨10.1186/s13148-022-01271-1⟩ Article dans une revue hal-03664165v1
ZNF683 (Hobit) Marks a CD8+ T Cell Population Associated with Anti-Tumor Immunity Following Anti-PD-1 Therapy for Richter Syndrome Camilla Lemvigh,Erin Michelle Parry,Stephanie Deng,Nathan Dangle,Neil Ruthenet al. Blood, 2022, 140 (Supplement 1), pp.1807-1808. ⟨10.1182/blood-2022-162550⟩ Article dans une revue hal-03950370v1
Correlation between DNA Methylation and cell proliferation identifies new candidate predictive markers in meningioma Sébastien Hergalant,Chloé Saurel,Marion Divoux,Fabien Rech,Celso Pougetet al. Cancers, 2022, 14 (24), pp.6227. ⟨10.3390/cancers14246227⟩ Article dans une revue hal-03939191v1
Low-frequency coding variants associated with body-mass-index impact the success of bariatric surgery Darlène Antoine,Rosa-Maria Guéant-Rodriguez,Jean-Claude Chèvre,Sébastien Hergalant,Tanmay Sharmaet al. Journal of Clinical Endocrinology and Metabolism, 2021, pp.dgab774. ⟨10.1210/clinem/dgab774⟩ Article dans une revue hal-03411898v1
Long-Term Overconsumption of Fat and Sugar Causes a Partially Reversible Pre-inflammatory Bowel Disease State Djésia Arnone,Marie Vallier,Sébastien Hergalant,Caroline Chabot,Ndeye Coumba Ndiayeet al. Frontiers in Nutrition, 2021, 8, pp.758518. ⟨10.3389/fnut.2021.758518⟩ Article dans une revue hal-03430881v1
Ionizing radiations induce shared epigenomic signatures unraveling adaptive mechanisms of cancerous cell lines with or without methionine dependency Youssef Siblini,Céline Chéry,Pierre Rouyer,Jérémie Raso,Amélia Julienet al. Clinical Epigenetics, 2021, 13 (1), pp.212. ⟨10.1186/s13148-021-01199-y⟩ Article dans une revue hal-03465924v1
Clinical, biological, and molecular genetic features of Richter syndrome and prognostic significance: a study of the French Innovative Leukemia Organization Charline Moulin,Francis Guillemin,Thomas Remen,Florian Bouclet,Sébastien Hergalantet al. American Journal of Hematology, 2021, 96 (9), pp.E311-E314. ⟨10.1002/ajh.26239⟩ Article dans une revue hal-03238759v1
Vitamin B 12 Deficiency Dysregulates m6A mRNA Methylation of Genes Involved in Neurological Functions Pauline Mosca,Aurélie Robert,Jean‐marc Alberto,Marie Meyer,Urbi Kunduet al. Molecular Nutrition and Food Research, 2021, 65 (17), pp.2100206. ⟨10.1002/mnfr.202100206⟩ Article dans une revue hal-03300551v1
Fetal Programming by Methyl Donor Deficiency Produces Pathological Remodeling of the Ascending Aorta Brittany Balint,Sébastien Hergalant,Jean-Michel Camadro,Sébastien Blaise,Laetitia Vanalderwiertet al. Arteriosclerosis, Thrombosis, and Vascular Biology, 2021, 41 (6), pp.1928-1941. ⟨10.1161/atvbaha.120.315587⟩ Article dans une revue hal-03238712v1
Facteurs pronostiques clinico-biologiques et génomiques de la survie dans le syndrome de Richter C. Moulin,F. Guillemin,T. Remen,F. Bouclet,H. Augéet al. Epidemiology and Public Health = Revue d'Epidémiologie et de Santé Publique, 2021, 69 (1), pp.52. ⟨10.1016/j.respe.2020.11.010⟩ Article dans une revue hal-03238804v1
Clinico-Biological, Molecular and Prognostic Features of Patients with Diffuse Large B-Cell Lymphoma-Variant of Richter Syndrome: A Multicenter Retrospective Study of the French Innovative Leukemia Organization Charline Moulin,Francis Guillemin,Thomas Rémen,Florian Bouclet,Hélène Augéet al. Blood, 2020, 136 (Suppl 1), pp.3-5. ⟨10.1182/blood-2020-137101⟩ Article dans une revue hal-03054135v1
Ki‐67 and MCM6 labelling indices are correlated with overall survival in anaplastic oligodendroglioma, IDH1 ‐mutant and 1p/19q‐codeleted: a multicenter study from the French POLA network Celso Pouget,Sébastien Hergalant,Emilie Lardenois,Stéphanie Lacomme,Rémi Houlgatteet al. Brain Pathology, 2020, 30 (3), pp.465-478. ⟨10.1111/bpa.12788⟩ Article dans une revue hal-02299833v1
Large-Scale Proteomics Identifies Distinct Signatures for Richter Syndrome and De Novo Diffuse Large B-Cell Lymphoma: A French Study from the Filo Group Romain Morizot,Sébastien Hergalant,Romain Piucco,Florian Bouclet,Anne Quinquenelet al. Blood, 2020, 136 (Supplement 1), pp.29-30. ⟨10.1182/blood-2020-137061⟩ Article dans une revue hal-03054165v1
Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing Charif Rashka,Sébastien Hergalant,Natacha Dreumont,Abderrahim Oussalah,Jean-Michel Camadroet al. Human Molecular Genetics, 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩ Article dans une revue hal-03100129v1
Mobilized Multipotent Hematopoietic Progenitors Stabilize and Expand Regulatory T Cells to Protect Against Autoimmune Encephalomyelitis Sarantis Korniotis,Maud d'Aveni,Sébastien Hergalant,Hélène Letscher,Emmanuel Tejerinaet al. Frontiers in Immunology, 2020, 11, pp.607175. ⟨10.3389/fimmu.2020.607175⟩ Article dans une revue hal-03087148v1
First identification of dopamine receptors in pikeperch, Sander lucioperca, during the pre-ovulatory period Jennifer Roche,Sébastien Hergalant,Amandine Depp,Imen Ben Ammar,Anne-Gaelle Lafontet al. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2020, 36, pp.100747. ⟨10.1016/j.cbd.2020.100747⟩ Article dans une revue hal-02975537v1
Microenvironment Remodeling and Subsequent Clinical Implications in Diffuse Large B-Cell Histologic Variant of Richter Syndrome Hélène Augé,Anne-Béatrice Notarantonio,Romain Morizot,Anne Quinquenel,Luc-Matthieu Forneckeret al. Frontiers in Immunology, 2020, 11, pp.594841. ⟨10.3389/fimmu.2020.594841⟩ Article dans une revue hal-03087137v1
Folate can promote the methionine-dependent reprogramming of glioblastoma cells towards pluripotency Racha Zgheib,Shyue-Fang Battaglia-Hsu,Sébastien Hergalant,Maelle Quéré,Jean-Marc Albertoet al. Cell Death and Disease, 2019, 10 (8), pp.596. ⟨10.1038/s41419-019-1836-2⟩ Article dans une revue hal-02265213v1
Wnt Signaling Pathways Are Dysregulated in Rat Female Cerebellum Following Early Methyl Donor Deficiency Jérèmy Willekens,Sébastien Hergalant,Grégory Pourié,Fabian Marin,Jean-Marc Albertoet al. Molecular Neurobiology, 2019, 56 (2), pp.892-906. ⟨10.1007/s12035-018-1128-3⟩ Article dans une revue hal-01804097v1
Inherited disorders of cobalamin metabolism disrupt nucleocytoplasmic transport of mRNA through impaired methylation/phosphorylation of ELAVL1/HuR Shyue-Fang Battaglia-Hsu,Rose Ghemrawi,David Coelho,Natacha Dreumont,Pauline Moscaet al. Nucleic Acids Research, 2018, 46 (15), pp.7844-7857. ⟨10.1093/nar/gky634⟩ Article dans une revue hal-01844820v1
Cytoplasmic overexpression of RNA-binding protein HuR is a marker of poor prognosis in meningioma, and HuR knockdown decreases meningioma cell growth and resistance to hypoxia Guillaume Gauchotte,Sébastien Hergalant,Charlène Vigouroux,Matthieu Casse,Rémi Houlgatteet al. The Journal of pathology and bacteriology, 2017, 242 (4), pp.421 - 434. ⟨10.1002/path.4916⟩ Article dans une revue hal-01718786v1
Relapsed diffuse large B-cell lymphoma present different genomic profiles between early and late relapses Julien Broséus,Gaili Chen,Sébastien Hergalant,Gérard Ramstein,Nicolas Mounieret al. Oncotarget, 2016, 7 (51), pp.83987-84002. ⟨10.18632/oncotarget.9793⟩ Article dans une revue hal-02314515v1
Identification of master genes involved in liver key functions through transcriptomics and epigenomics of methyl donor deficiency in rat: Relevance to nonalcoholic liver disease Gaili Chen,Julien Broséus,Sébastien Hergalant,Audrey Donnart,Catherine Chevalieret al. Molecular Nutrition and Food Research, 2015, 59 (2), pp.293 - 302. ⟨10.1002/mnfr.201400483⟩ Article dans une revue istex hal-01755906v1
A new data mining approach for the detection of bacterial promoters combining stochastic and combinatorial methods Catherine Eng,Charu Asthana,Bertrand Aigle,Sébastien Hergalant,Jean-Francois Mariet al. Journal of Computational Biology, 2009, 16 (9), pp.1211-1225. ⟨10.1089/cmb.2008.0122⟩ Article dans une revue inria-00419969v1

Communication dans un congrès (13)

Exhaustive Identification of Pleiotropic Loci for Serum Leptin Levels in the NHGRI-EBI Genome-Wide Association Catalog Anthony Haidamous,David Meyre,Sébastien Hergalant Journées Ouvertes en Biologie, Informatique et Mathématiques, Société Française de Bioinformatique, Jul 2025, Bordeaux, France. pp.231 Communication dans un congrès hal-05219695v1
adverSCarial: a toolkit for exposing classifier vulnerabilities in single-cell transcriptomics Ghislain Fievet,Julien Broséus,David Meyre,Sébastien Hergalant ISMB/ECCB2025, Jul 2025, Liverpool, United Kingdom Communication dans un congrès hal-05222861v1
Multi-omics characterization of Richter syndrome unlocks classifiers and predictors of outcome into broader and heterogeneous lymphoma datasets Sébastien Hergalant,Romain Piucco,Ghislain Fiévet,Emil Chteinberg,Stephan Stilgenbaueret al. JOBIM2023, Jun 2023, Plouzané (Brest), France Communication dans un congrès hal-04147573v1
Etude du méthylome et du transcriptome dans le Syndrome de Richter Sébastien Hergalant,Julien Broséus 6e journées du FILO, Oct 2020, Nancy, France Communication dans un congrès hal-03177006v1
Caractérisation du profil protéomique du Syndrome de Richter Romain Piucco,Romain Morizot,Luc-Matthieu Fornecker,Pierre Feugier,Sébastien Hergalantet al. 6e journées de la French Innovative Leukemia Organization, Oct 2020, Nancy, France Communication dans un congrès hal-03176937v1
Description d'une nouvelle signature immunitaire dans le contexte de la rechute après allogreffe de Cellules Souches Hématopoïétiques Anne-Béatrice Notarantonio,Romain Piucco,Sébastien Hergalant,Laura Boulangé,Jordan Brouardet al. 6ème Journée de la French Innovative Leukemia Organization, Oct 2020, Nancy, France Communication dans un congrès hal-02976925v1
Ki-67 and MCM6 labelling index are correlated with overall survival in anaplastic oligodendroglioma, IDH1-mutant and 1p/19q codeleted: a multicenter study from the French POLA Network Celso Pouget,Sébastien Hergalant,Emilie Lardenois,Shyue-Fang Battaglia-Hsu,Rémi Houlgatteet al. 31 st European Congress of Pathology, Sep 2019, Nice, France. pp.1-436, ⟨10.1007/s00428-019-02631-8⟩ Communication dans un congrès hal-03012220v1
Data Mining Using Hidden Markov Models (HMM2) to Detect Heterogeneities into Bacteria Genomes Catherine Eng,Annabelle Thibessard,Sébastien Hergalant,Jean-François Mari,Pierre Leblond Journées Ouvertes Biologie, Informatique et Mathématiques - JOBIM 2005, JOBIM, Jul 2005, Lyon/France, France Communication dans un congrès inria-00000142v1
Fouille de données du génome à l'aide de modèles de Markov cachés Sébastien Hergalant,Bertrand Aigle,Pierre Leblond,Jean-François Mari Extraction et Gestion de Connaissances - EGC 2005, Jan 2005, Paris/France, France. pp.141 -- 148 Communication dans un congrès inria-00001213v1
Classification non supervisée par HMM de sites de fixation de facteurs de transcription chez les bactéries Sébastien Hergalant,Bertrand Aigle,Bernard Decaris,Jean-François Mari,Pierre Leblond 5èmes Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'04, 2004, Montréal, Canada, 1 p Communication dans un congrès inria-00107788v1
HMM, an Efficient Way to Detect Transcriptional Promoters in Bacterial Genomes? Sébastien Hergalant,Bertrand Aigle,Bernard Decaris,Jean-François Mari,Pierre Leblond European Conference on Computational Biology - ECCB'2003, Sep 2003, Paris, France, pp.417--419 Communication dans un congrès inria-00099570v1
Intragenomic reiterations detection using hidden Markov models Sébastien Hergalant,Bertrand Aigle,Bernard Decaris,Pierre Leblond,Jean-François Mari 10th International Conference on Intelligent Systems for Molecular Biology - ISMB 2002, Aug 2002, Edmonton, Canada, 1 p Communication dans un congrès inria-00100914v1
Fouille de données à l'aide de HMM : Application à la détection de réitérations intragénomiques Sébastien Hergalant,Bertrand Aigle,Bernard Decaris,Pierre Leblond,Jean-François Mari Journées Ouvertes Biologie Informatique Mathématiques - JOBIM'02, François Coste - Elisabeth Lebret, 2002, Saint Malo, France, pp.269-273 Communication dans un congrès inria-00100752v1

Proceedings/Recueil des communications (4)

Deciphering the Gene Expression Signature of High-Grade B-cell Lymphomas with 11q Aberrations Emil Chteinberg,Gioia Di Stefano,Henry Löffler-Wirth,Annette M. Staiger,Sina Hillebrechtet al. 57th European Society of Human Genetics (ESHG) Conference, Jun 2024, Berlin, Germany. European Journal of Human Genetics, 32 (S2), SPRINGERNATURE, pp.1231-1841, 2024, ⟨10.1038/s41431-024-01734-4⟩ Proceedings/Recueil des communications hal-05042510v1
Multistage epigenome-wide association study identifies highly accurate epigenomic signatures in association with hepatocellular carcinoma: The HCC epigenome score Abderrahim Oussalah,Ryan Hlady,Sébastien Hergalant,Jean-Pierre Bronowicki,Jean-Louis Guéantet al. Journal of Hepatology, 77 (Supp 1), pp.S923-S924, 2022, ⟨10.1016/s0168-8278(22)02130-4⟩ Proceedings/Recueil des communications hal-03950374v1
Higher Expression of CD44 in De Novo Diffuse Large B-cell Lymphoma Than in Richter Syndrome Charline Moulin,Sébastien Hergalant,Romain Piucco,Romain Morizot,Christine Carapitoet al. Laboratory Investigation, 102, pp.942-1088, 2022, ⟨10.1038/s41374-022-00758-y⟩ Proceedings/Recueil des communications hal-03952983v1
Cardiac manifestations of inherited metabolic disease linked to cellular vitamin B12 (cobalamin) uptake: Study in murine model of invalidation of Mtr gene in the heart V.J. Kosgei,C. Arnold,F. Elkhafifi,P. Lacolley,Sébastien Hergalantet al. Archives of Cardiovascular Diseases Supplements, 11 (2), pp.242, 2019, ⟨10.1016/j.acvdsp.2019.02.131⟩ Proceedings/Recueil des communications hal-02266368v1

Poster de conférence (8)

XAItest: Evaluating XAI-Based Feature Discovery Methods Ghislain Fievet,Julien Broséus,David Meyre,Sébastien Hergalant ISMB/ECCB 2025, Jul 2025, Liverpool, United Kingdom. ⟨10.18129/B9.bioc.XAItest⟩ Poster de conférence hal-05222882v1
Comprehensive Identification of Pleiotropic Associations for Chronic Lymphocytic Leukemia Anthony Haidamous,Vivian Zingui,Océane Reichert,David Meyre,Sébastien Hergalant Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. JOBIM proceedings posters, pp.161, 2025 Poster de conférence hal-05219704v1
Assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks with adverSCarial Ghislain Fievet,Julien Broséus,David Meyre,Sébastien Hergalant European Conference on Computational Biology (ECCB), Sep 2024, Turku (Finlande), Finland Poster de conférence hal-04768105v1
Comprehensive Identification of Pleiotropic Associations for Clonal Haematopoiesis of Indeterminate Potential Esther Hazane Leroyer,David Meyre,Simona Pagliuca,Sébastien Hergalant EHA2024, Jun 2024, Madrid, Spain. 419477, pp.P1390, 2024 Poster de conférence hal-04764105v1
isomiRs as a feature for comparing microRNA regulatory networks in aggressive lymphomas Romain Piucco,Ghislain Fievet,Julien Broséus,Sébastien Hergalant 23rd European Conference on Computational Biology - ECCB2024, Sep 2024, Turku (Finlande), Finland Poster de conférence hal-04767947v1
adverSCarial: a tool for evaluating adversarial attacks on single-cell transcriptomics classifiers Ghislain Fievet,Sébastien Hergalant JOBIM2023, Jun 2023, Plouzané (Brest), France. , 2023 Poster de conférence hal-04160225v1
Integrating the miRnome into multiple omics of Richter Transformation: Insights into the development of aggressive lymphomas Romain Piucco,Ghislain Fievet,Pierre Feugier,Julien Broséus,Sébastien Hergalant JOBIM2023, Jun 2023, Plouzané (Brest), France. , 2023 Poster de conférence hal-04160201v1
Data Mining Using Hidden Markov Models (HMM2) to Detect Heterogeneities into Bacteria Genomes Catherine Eng,Annabelle Thibessard,Sébastien Hergalant,Jean-François Mari,Pierre Leblond 6. Journées Ouvertes Biologie, Informatique et Mathématiques - JOBIM, Jul 2005, Lyon, France. , 1 p., 2005 Poster de conférence hal-02833554v1

Chapitre d'ouvrage (1)

Fouille de données du génome à l'aide de modèles de Markov cachés Sébastien Hergalant,Bertrand Aigle,Pierre Leblond,Jean-François Mari Extraction et gestion des connaissances. EGC 2005, Cépaduès, 2005, Revue des Nouvelles Technologies de l'Information, 2-85428-677-4 2-85428-682-0 (vol. 1) 2-85428-683-9 (vol. 2) Chapitre d'ouvrage hal-02832934v1

Logiciel (2)

XAItest: Enhancing Feature Discovery with eXplainable AI Ghislain Fievet,Sébastien Hergalant 2025, ⟨swh:1:dir:77a6064fdbf348a5878ba96dfb2b14eb596c50d8;origin=https://hal.archives-ouvertes.fr/hal-05040753;visit=swh:1:snp:9724a7f2acffaf4bc1e157d15d3529e6ed053da2;anchor=swh:1:rel:9bc9cbfc9a65d622afd4d47e98b54991d3eb83f0;path=/⟩ Logiciel hal-05040753v1
adverSCarial: analyze the vulnerability of scRNA-seq classifiers to adversarial attacks Ghislain Fievet,Sébastien Hergalant 2024, ⟨swh:1:dir:c162411ba5d8f7accef61375866c71d9f4dcf16d;origin=https://hal.archives-ouvertes.fr/hal-05035778;visit=swh:1:snp:eba89736d2c3e84f1584afd7e342530dc86f613f;anchor=swh:1:rel:f85342660b3be50a6c1e0e2dbfaa26b42d2c2cda;path=/⟩ Logiciel hal-05035778v1

Thèse (1)

Genomics of rare and complex/common metabolic diseases and their comorbidities Sébastien Hergalant Human health and pathology. Université de Lorraine, 2023. English. ⟨NNT : 2023LORR0218⟩ Thèse tel-04555020v1

Rapport (2)

FouDanGA : Fouille de données pour l'annotation de génomes d'actinomycètes Jean-François Mari,Fabrice Touzain,Sébastien Hergalant,Isabelle Debled-Rennesson [Rapport de recherche] 2005 Rapport (rapport de recherche) inria-00000453v1
Segmentation du génome de Streptomyces coelicolor par chaînes de Markov pour la recherche de réitérations Sébastien Hergalant [Stage] A01-R-392 || hergalant01a, 2001, 50 p Rapport inria-00100649v1