Somia SAIDI

Présentation

Publications

Article dans une revue (1)

A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species Somia Saidi,Mathieu Blaison,María del Pilar Rodríguez-Ordóñez,Johann Confais,Hadi Quesneville Genome Biology, 2026, ⟨10.1186/s13059-026-03984-5⟩ Article dans une revue hal-05513831v1

Communication dans un congrès (11)

The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the Species Johann Confais,Somia Saidi,Hadi Quesneville International Plant & Animal Genome (PAG 32), Jan 2025, San Diego (California), United States Communication dans un congrès hal-04947937v1
The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the Species Johann Confais,Somia Saidi,Hadi Quesneville International Brachypodium Research Conference 2025 (IBRC 2025), Jul 2025, Monte Verità, Switzerland Communication dans un congrès hal-05202091v1
Evolutionary Dynamics of Transposable Elements in Brachypodium distachyon Based on a Pangenomic Approach Somia Saidi,Johann Confais,Hadi Quesneville International Plant & Animal Genome (PAG 31), Jan 2024, San Diego, United States Communication dans un congrès hal-04419364v1
The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species Johann Confais,Somia Saidi,Hadi Quesneville Journées "BioinfOmics" sur la pangénomique, BioinfOmics, Dec 2024, Toulouse, France Communication dans un congrès hal-04944985v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville Journées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France Communication dans un congrès hal-04283863v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville 24th National Congress on Transposable Elements 2023 (CNET 2023), French research community working on transposable elements (CNET), Jul 2023, Perpignan, France Communication dans un congrès hal-04158362v1
How to use REPET for de novo TE annotation Johann Confais,Mariène Wan,Somia Saidi,Hadi Quesneville 11th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis, Laboratory of Molecular Cytogenetics of the Biology Centre CAS, May 2023, České Budějovice, Czech Republic Communication dans un congrès hal-04117937v1
REPET novelties : a versatile and modular package Johann Confais,Mariène Wan,Somia Saidi,Hadi H. Quesneville CNET 2023 : 24th National Congress on Transposable Elements 2023, French research community working on transposable elements (CNET), Jul 2023, Perpignan, France Communication dans un congrès hal-04156193v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville GDR CNRS 3546 Mobil-ET Annual Meeting, Mobil-ET GDR CNRS 3546, Dec 2022, Paris, France Communication dans un congrès hal-03890780v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville 23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France Communication dans un congrès hal-03819044v1
Transposable elements, from their annotation to their integration into knowledge graphs Johann Confais,Mariène Wan,Somia Saidi,Nicolas Francillonne,Hadi Quesneville Journée thématique - Annotation, Intelligence Artificielle et Text-mining, PEPI IBIS, Nov 2022, Jouy-en-Josas, France Communication dans un congrès hal-03876510v1

Poster de conférence (3)

panREPET: A Pipeline to characterize Transposable Elements in Pangenomes on de novo assembled genomes Somia Saidi,Johann Confais,Hadi Quesneville International Plant & Animal Genome (PAG 31), Jan 2024, San Diego (CA), United States Poster de conférence hal-04516410v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville JOBIM 2023, Jun 2023, Tours, France Poster de conférence hal-04158902v1
Characterization of Transposable Elements in Pangenomes Somia Saidi,Johann Confais,Hadi Quesneville SMBE23, Jul 2023, Ferrara, Italy Poster de conférence hal-04516434v1

Pré-publication, Document de travail (1)

Contrasting genomic routes to domestication in Occidental and Oriental pears Yuqi Nie,Xilong Chen,Somia Saidi,Yann Bourgeois,Anthony Venonet al. 2026 Pré-publication, Document de travail hal-05513840v1

Logiciel (3)

panREPET paper's accompanying scripts Somia Saidi 2025, ⟨swh:1:dir:4ece52a25918b63e4e008a2015143bad051a7222;origin=https://forge.inrae.fr/urgi-anagen/scripts_for_panrepet.git;visit=swh:1:snp:72543fe82a0492351cc28687882bf205c1dac9c8;anchor=swh:1:rev:c7dbbf04a291e5296a678b7a8fe7b3943454aa87⟩ Logiciel hal-05199481v1
panTEannot pipeline Somia Saidi,Johann Confais,Hadi Quesneville 2025, ⟨swh:1:dir:8a8d539918a9484fda4e17b9b3856c426be33525;origin=https://forge.inrae.fr/urgi-anagen/panTEannot;visit=swh:1:snp:57ad8167c78fbd80ce775a34e00c520f5ef25638;anchor=swh:1:rev:1ab3aeedd05e99af2904dac694296227b1dffe94⟩ Logiciel hal-05195049v1
panREPET pipeline Somia Saidi,Mathieu Blaison,María del Pilar Rodríguez-Ordóñez,Johann Confais,Hadi Quesneville 2025, ⟨swh:1:dir:c5869aafcd21acac329d6a0fb816938b55734e42;origin=https://forge.inrae.fr/urgi-anagen/panREPET.git;visit=swh:1:snp:00f2a8ab8f705f261ef5eae40f9139feb757e70d;anchor=swh:1:rev:737d848f56d1791d8b0b9c5ab449cad3ab252670⟩ Logiciel hal-05195047v1