sophie bouchet chargé de recherche INRAE

Publications

Article dans une revue (26)

Validation of cross-progeny variance genomic prediction using simulations and experimental data in winter elite bread wheat Claire Oget-Ebrad,Emmanuel Heumez,Laure Duchalais,Ellen Goudemand-Dugué,François-Xavier Ouryet al. TAG Theoretical and Applied Genetics, 2024, 137 (10), pp.226. ⟨10.1007/s00122-024-04718-6⟩ Article dans une revue hal-04707010v1
Severe Bacterial Non-AIDS Infections in Persons With Human Immunodeficiency Virus: The Epidemiology and Evolution of Antibiotic Resistance Over an 18-Year Period (2000–2017) in the ANRS CO3 AquiVih-Nouvelle-Aquitaine Cohort Peggy Blanc,Fabrice Bonnet,Olivier Leleux,Adélaïde Perrier,Emilie Bessedeet al. Clinical Infectious Diseases, 2023, 76 (10), pp.1814-1821. ⟨10.1093/cid/ciac978⟩ Article dans une revue hal-05594941v1
Comparison of genomic-enabled cross selection criteria for the improvement of inbred line breeding populations Alice Danguy Des Deserts,Nicolas Durand,Bertrand Servin,Ellen Goudemand-Dugué,Jean-Marc Alliotet al. G3, 2023, 13 (11), 15 p. ⟨10.1093/g3journal/jkad195⟩ Article dans une revue hal-04214520v1
Phenomic selection in wheat breeding: identification and optimisation of factors influencing prediction accuracy and comparison to genomic selection Pauline Robert,Jérôme Auzanneau,Ellen Goudemand,François-Xavier Oury,Bernard Rollandet al. TAG Theoretical and Applied Genetics, 2022, 135 (3), pp.895-914. ⟨10.1007/s00122-021-04005-8⟩ Article dans une revue hal-03524817v1
Phenomic selection in wheat breeding: prediction of the genotype-by-environment interaction in multi-environment breeding trials Pauline Robert,Ellen Goudemand,Jérôme Auzanneau,François-Xavier Oury,Bernard Rollandet al. TAG Theoretical and Applied Genetics, 2022, 135, pp.3337-3356. ⟨10.1007/s00122-022-04170-4⟩ Article dans une revue hal-03765277v1
A genomics resource for genetics, physiology, and breeding of West African sorghum Jacques M Faye,Fanna Maina,Eyanawa A Akata,Bassirou Sine,Cyril Diattaet al. Plant Genome, 2021, ⟨10.1002/tpg2.20075⟩ Article dans une revue hal-03274357v1
Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Déserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin Genome Biology and Evolution, 2021, 13 (8), ⟨10.1093/gbe/evab152⟩ Article dans une revue hal-03290674v1
Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints Sarah Ben-Sadoun,Aline Fugeray-Scarbel,Jérôme Auzanneau,Gilles Charmet,Stephane Lemariéet al. Crop Breeding,Genetics and Genomics , 2021, 3, ⟨10.20900/cbgg20210008⟩ Article dans une revue hal-03359314v1
BWGS: A R package for genomic selection and its application to a wheat breeding programme Gilles Charmet,Louis-Gautier Tran,Jerome Auzanneau,Renaud Rincent,Sophie Bouchet PLoS ONE, 2020, 15 (4), pp.1-20. ⟨10.1371/journal.pone.0222733⟩ Article dans une revue hal-02571067v1
Economical optimization of a breeding scheme by selective phenotyping of the calibration set in a multi-trait context: application to bread making quality S. Ben-Sadoun,Renaud Rincent,J. Auzanneau,François-Xavier Oury,B. Rollandet al. TAG Theoretical and Applied Genetics, 2020, 133 (7), pp.2197-2212. ⟨10.1007/s00122-020-03590-4⟩ Article dans une revue hal-02553534v1
Dissecting adaptive traits with nested association mapping: genetic architecture of inflorescence morphology in sorghum Marcus Olatoye,Sandeep Marla,Zhenbin Hu,Sophie Bouchet,Ramasamy Perumalet al. G3, 2020, 10 (5), pp.1785-1796. ⟨10.1534/g3.119.400658⟩ Article dans une revue hal-02911856v1
Worldwide phylogeography and history of wheat genetic diversity François Balfourier,Sophie Bouchet,Sandra Robert,Romain de Oliveira,Hélène Rimbertet al. Science Advances , 2019, 5 (5), pp.eaav0536. ⟨10.1126/sciadv.aav0536⟩ Article dans une revue hal-02172516v1
Population genomics of sorghum (Sorghum bicolor) across diverse agroclimatic zones of Niger Fanna Maina,Sophie Bouchet,Sandeep R. Marla,Zhenbin Hu,Jianan Wanget al. Genome, 2018, 61 (4), pp.223-232. ⟨10.1139/gen-2017-0131⟩ Article dans une revue hal-02625927v1
Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population. Sophie Bouchet,Marcus O Olatoye,Sandeep R Marla,Ramasamy Perumal,Tesfaye Tessoet al. Genetics, 2017, 206 (2), pp.573-585. ⟨10.1534/genetics.116.198499⟩ Article dans une revue hal-02627749v1
Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits Sophie Bouchet,Pascal Bertin,T Presterl,Philippe Jamin,Denis Coubricheet al. Heredity, 2017, 118 (3), pp.249-259. ⟨10.1038/hdy.2016.88⟩ Article dans une revue hal-01481767v1
Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces Zhenbin Hu,Bassirou Mbacké,Ramasamy Perumal,Mame Codou Guèye,Ousmane Syet al. BMC Genomics, 2015, 16 (1), ⟨10.1186/s12864-015-2255-0⟩ Article dans une revue hal-01342372v1
Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production Renaud Rincent,Stephane S. Nicolas,Sophie Bouchet,T. Altmann,Dominique D. Brunelet al. TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩ Article dans une revue hal-02637142v1
Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus Sophie Bouchet,Bertrand Servin,Pascal Bertin,Delphine D. Madur,Valerie V. Combeset al. PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩ Article dans une revue hal-02652500v1
Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources Claire Billot,Punna Ramu,Sophie Bouchet,Jacques Chantereau,Monique Deuet al. PLoS ONE, 2013, 8 (4), pp.e59714. ⟨10.1371/journal.pone.0059714⟩ Article dans une revue hal-01595265v1
An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis Philippe Cubry,Fabien de Bellis,Komlan Avia,Sophie Bouchet,David Potet al. BMC Genomics, 2013, 14, 15 p. ⟨10.1186/1471-2164-14-10⟩ Article dans une revue hal-02643249v1
Flowering Time in Maize: Linkage and Epistasis at a Major Effect Locus Eléonore Durand,Sophie Bouchet,Pascal Bertin,Adrienne Ressayre,Philippe Jaminet al. Genetics, 2012, 190 (4), pp.1547 - +. ⟨10.1534/genetics.111.136903⟩ Article dans une revue hal-02648939v1
Genetic diversity of taro (Colocasia esculenta (L.) Schott) in Vanuatu (Oceania): an appraisal of the distribution of allelic diversity (DAD) with SSR markers Julie Sardos,Jean-Louis Noyer,Sophie Bouchet,Vincent Lebot Genetic Resources and Crop Evolution, 2012, 59 (5), pp.805 - 820. ⟨10.1007/s10722-011-9720-7⟩ Article dans une revue istex hal-01268335v1
Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers Sophie Bouchet,David Pot,Monique Deu,Jean-François Rami,Claire Billotet al. PLoS ONE, 2012, 7 (3), ⟨10.1371/journal.pone.0033470⟩ Article dans une revue hal-01268396v1
Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region Fabrice Sagnard,Monique Deu,Dékoro Dembélé,Raphaël Leblois,Lassana Touréet al. TAG Theoretical and Applied Genetics, 2011, 123 (7), pp.1231-1246. ⟨10.1007/s00122-011-1662-0⟩ Article dans une revue hal-02649865v1
A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers Emma S Mace,Jean-Francois Rami,Sophie Bouchet,Patricia E Klein,Robert R Kleinet al. BMC Plant Biology, 2009, 9 (13), ⟨10.1186/1471-2229-9-13⟩ Article dans une revue hal-01338089v1
Leaf tip necrosis, molecular markers and β1-proteasome subunits associated with the slow rusting resistance genes Lr46/Yr29 G. M. Rosewarne,R. P. Singh,J. Huerta-Espino,H. M. William,Sophie Bouchetet al. TAG Theoretical and Applied Genetics, 2006, 112 (3), pp.500-508. ⟨10.1007/s00122-005-0153-6⟩ Article dans une revue istex hal-01338628v1

Communication dans un congrès (15)

Preliminary Results from the IWGSC Wheat Diversity Project Joshua C Stein,Kevin Fengler,Victor Llaca,Elodie Belmonte,Vincent Pailleret al. PAG 33, Jan 2026, San diego, United States Communication dans un congrès hal-05518160v1
Validation of cross progeny variance genomic prediction using simulations and experimental data in winter elite bread wheat. Claire Oget-Ebrad,Emmanuel Heumez,Laure Duchalais,Ellen Goudemand-Dugué,François-Xavier Ouryet al. 7th Conference on Cereal Biotechnology and Breeding, EUCARPIA-2023 CBB7 + EWAC, Nov 2023, Wernigerode, Germany Communication dans un congrès hal-04707460v1
Validation of cross progeny variance genomic prediction using simulations and experimental data in winter elite bread wheat Claire Oget-Ebrad,Emmanuel Heumez,Laure Duchalais,E Goudemand-Dugué,François-Xavier Ouryet al. R2D2, Nov 2023, Angers, France Communication dans un congrès hal-04721273v1
Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Deserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin IWGSC (International Wheat Genome Sequencing Consortium ), Mar 2022, Webinar, France Communication dans un congrès hal-04353824v1
Identification of factors influencing predictive ability of phenomic selection and comparison to genomic selection in wheat breeding programs P Robert,Francois-Xavier Oury,Jérôme Auzanneau,Bernard Rolland,Emmanuel E. Heumezet al. 6th Conference on Cereal Biotechnology and Breeding,CBB6, EUCARPIA; AKCongress, Nov 2021, Budapest, Hungary Communication dans un congrès hal-03480325v1
Prédiction génomique de la valeur boulangère Sarah Ben Sadoun,Sophie Bouchet,Gilles Charmet Phloème 2020 : biennales de l’innovation céréalière, Arvalis - Institut du végétal, Jan 2020, Paris, France Communication dans un congrès hal-03113799v1
Cloning of AvrStb9, a gene of Zymoseptoria tritici conferring avirulence on wheat cultivars carrying the Stb9 resistance gene Thierry Marcel,Colette Audéon,Jérôme Compain,Gélisse Sandrine,Aurélie Ducasseet al. ECFG15 - 15th European conference on fungal genetics, ECFG15, Feb 2020, Rome, Italy. pp.340-341 Communication dans un congrès hal-04273732v1
Selection and characterization of a winter wheat diversity panel Jacques Le Gouis,Agathe Mini,Sophie Bouchet,Etienne Paux,Stéphane Lafargeet al. 7. Congress and Associate Symposiums of Breads of the future: genomics, genetics, breeding, Federal research center “Vavilov all-Russian Institute of Plant Genetic Resources” – VIR., Jun 2019, St Petersbourg, Russia Communication dans un congrès hal-02289527v1
Bread-making quality predictions of multi-trait assisted genomic selection Sarah Ben Sadoun,Renaud Rincent,Jerome Auzanneau,Francois-Xavier Oury,Bernard Rollandet al. 1. International Wheat Congress, International Wheat Congress; Wheat inititive, Jul 2019, Saskatoon, Canada Communication dans un congrès hal-02942672v1
Bread-making quality predictions: multi-trait assisted genomic selection in bread wheat Sarah Ben Sadoun,Renaud Rincent,Jerome Auzanneau,Francois-Xavier Oury,Bernard Rollandet al. "Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy Communication dans un congrès hal-02289536v1
Historical recombination maps estimated with two diverging european and asian populations on bread wheat 3B chromosome Alice Danguy Des Deserts,Ludovic Duvaux,Pierre Sourdille,Sophie Bouchet "Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy Communication dans un congrès hal-02289531v1
Cloning of AvrStb9, a gene of Zymoseptoria tritici conferring avirulence on wheat cultivars carrying the Stb9 resistance gene Thierry Marcel,Colette Audeon,Compain Jérôme,Sandrine Gélisse,Aurélie Ducasseet al. International Symposium on Cereal Leaf Blights (ISCLB) 2019, ISCLB, May 2019, Dublin, Germany. p.31 Communication dans un congrès hal-04272212v1
Optimization of breeding schemes using genomic predictions and simulations Sophie Bouchet,Stephane Lemarié,Aline Fugeray-Scarbel,Jerome Auzanneau,Gilles Charmet 4. Conference on Cereal Biotechnology and Breeding (CBB4), EUCARPIA Cereal Section., Nov 2017, Budapest, Hungary Communication dans un congrès hal-02786724v1
De la modélisation des schémas de sélection à l'analyse de l'efficacité économique de la sélection génomique : méthode et quelques cas d'application Aline Fugeray-Scarbel,Stephane Lemarié,Sophie Bouchet,Gilles Charmet,Jean Michel Elsenet al. Séminaire SelGen 2017 : "La sélection génomique, bilan et perspectives", Sep 2017, Clichy, France. 1 p Communication dans un congrès hal-01595570v1
Virtual selection for comparing wheat breeding schemes at constant total cost Gilles Charmet,Sophie Bouchet,Jerome Auzanneau,Aline Fugeray-Scarbel,Stephane Lemarié 13. International Wheat Genetics Symposium, Apr 2017, Tulln, Austria Communication dans un congrès hal-02340466v1

Poster de conférence (7)

Preliminary Results from the IWGSC Wheat Diversity Project Joshua C Stein,Catalina Johnson,Victor Llaca,Kevin Fengler,Isabelle Caugantet al. PAG 33, Jan 2026, San Diego, United States Poster de conférence hal-05519131v1
IWGSC 2.0: Wheat Genome Curation for Future Crop Resilience The International Wheat Genome Sequencing Consortium Catalina Johnson,Joshua C Stein,Victor Llaca,Kevin Fengler,Isabelle Caugantet al. PAG32, 2025, San Diego, United States Poster de conférence hal-05519247v1
Evaluation multi-environnementale de blé tendre « exotique » -prédictions génomiques GxE et génétique d'association Justin Blancon,Jonathan Kitt,Pauline Lasserre-Zuber,David Alvarez,Sibille Perrochonet al. 9 ème rencontre scientifiques du FSOV, Apr 2024, Paris, France Poster de conférence hal-04708036v1
Analyse de diversité d'un panel de pré-breeding de blé tendre par une approche transcriptomique Hélène Rimbert,Frédéric Choulet,Odile Argillier,Jérôme Auzanneau,Mark Daveyet al. 9 ème rencontres du FSOV -2024, Apr 2024, Paris, France Poster de conférence hal-04712172v1
IWGSC 2.0: Implementing the Wheat Diversity Project Joshua C Stein,Victor Llaca,Kevin Fengler,Catalina Johnson,Isabelle Caugantet al. PAG 2024 Australia, Sep 2024, Perth, Australia Poster de conférence hal-04913949v1
Etablissement d'un modèle de sélection génomique pour la qualité boulangère du blé-GS qualité-FSOV 2014 N Bruno Poupard,Sophie Bouchet,François Guion,Mathieu Bogard 8 -ème rencontre scientifique du FSOV, Mar 2019, Paris, France Poster de conférence hal-04715865v1
Historical recombination maps estimed with two diverging european and asian populations on bread wheat chromosome 3B Alice Danguy Des Deserts,L Duvaux,Pierre Sourdille,Sophie Bouchet GRC : gordon research congress Quantitative Genetics and Genomics, Feb 2019, Lucca, Italy Poster de conférence hal-04990084v1

Chapitre d'ouvrage (2)

Analyzing the economic effectiveness of genomic selection relative to conventional breeding approaches Aline Fugeray-Scarbel,Sarah Ben-Sadoun,Sophie Bouchet,Stephane Lemarié Nourollah Ahmadi; Jérôme Bartholomé. Complex Trait Prediction, 2467, Springer US, pp.619-644, 2022, Methods in Molecular Biology, 978-1-0716-2205-6. ⟨10.1007/978-1-0716-2205-6_22⟩ Chapitre d'ouvrage hal-03652408v1
Population Genomics Along With Quantitative Genetics Provides a More Efficient Valorization of Crop Plant Genetic Diversity in Breeding and Pre-breeding Programs Peter Civan,Renaud Rincent,Alice Danguy-Des-Deserts,Jean-Michel Elsen,Sophie Bouchet Population Genomics, Springer International Publishing, 2021, Population Genomics, ⟨10.1007/13836_2021_97⟩ Chapitre d'ouvrage hal-04343956v1

Pré-publication, Document de travail (1)

Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Déserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03244446v1

Rapport (3)

DéBAT : Analyse de Diversité d'un panel de pré-breeding de Blé tendre par une approche Transcriptomique-projet FSOV 2018 M Hélène Rimbert,Frédéric Choulet,Odile Argillier,Jerome Auzanneau,Mark Daveyet al. INRAE. 2024 Rapport (rapport contrat/projet) hal-04713932v1
ExIGE : Évaluation multi-environnementale de blé tendre « exotique »prédictions génomiques GxE et génétique d'association-projet FSOV 2018 P Justin Blancon,Jonathan Kitt,Pauline Lasserre-Zuber,David Alvarez,Sibille Perrochonet al. INRAE. 2024 Rapport hal-04712254v1
GS-qualité -Établissement d'un modèle de sélection génomique pour la qualité boulangère des blés-FSOV 2014 N Bruno Poupard,Sophie Bouchet,François Guion,Matthieu Bogard INRAE. 2019 Rapport (rapport contrat/projet) hal-04716028v1