Sophie Colombié

Publications

Article dans une revue (37)

Artificial intelligence: the human response to approach the complexity of big data in biology Giovanni Melandri,Georges R-Radohery,Chloé Beaumont,Sara M de Cripan,Coralie Mulleret al. GigaScience, 2025, 14, pp.giaf057. ⟨10.1093/gigascience/giaf057⟩ Article dans une revue hal-05118620v1
Grapevine cell response to carbon deficiency requires transcriptome and methylome reprogramming Margot Berger,Virginie Garcia,Nathalie Lacrampe,Bernadette Rubio,Guillaume Decroset al. Horticulture research, 2025, 12 (1), pp.uhae277. ⟨10.1093/hr/uhae277⟩ Article dans une revue hal-04791091v1
Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development Chloé Beaumont,Sylvain Prigent,Kentaro Mori,Pierre Baldet,Joana Jorlyet al. Journal of Experimental Botany, 2025, pp.eraf122. ⟨10.1093/jxb/eraf122⟩ Article dans une revue hal-05037526v1
Modelling metabolic fluxes of tomato stems reveals that nitrogen shapes central metabolism for defence against Botrytis cinerea Nathalie Lacrampe,Raphaël Lugan,Doriane Dumont,Philippe C. Nicot,François Lecompteet al. Journal of Experimental Botany, 2024, 75 (13), pp.4093-4110. ⟨10.1093/jxb/erae140⟩ Article dans une revue hal-04554488v1
Multi-regulated GDP-l-galactose phosphorylase calls the tune in ascorbate biosynthesis Pierre Baldet,Kentaro Mori,Sylvain Prigent,Guillaume Decros,Bertrand Beauvoitet al. Journal of Experimental Botany, 2024, 75 (9), pp.2631-2643. ⟨10.1093/jxb/erae032/7607105⟩ Article dans une revue hal-04530669v1
Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert Francisca Díaz,Thomas Dussarrat,Gabriela Carrasco-Puga,Sophie Colombie,Sylvain Prigentet al. New Phytologist, 2024, 241 (3), pp.1074-1087. ⟨10.1111/nph.19415⟩ Article dans une revue hal-04514679v1
Enzyme‐based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability Guillaume Decros,Thomas Dussarrat,Pierre Baldet,Cédric Cassan,Cécile Cabassonet al. New Phytologist, 2023, ⟨10.1111/nph.19160⟩ Article dans une revue hal-04178513v1
Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems Nathalie Lacrampe,Sophie Colombie,Doriane Dumont,Philippe C. Nicot,François Lecompteet al. Planta, 2023, 257 (2), pp.41. ⟨10.1007/s00425-022-04065-0⟩ Article dans une revue hal-03951301v1
Comparative constraint‐based modelling of fruit development across species highlights nitrogen metabolism in the growth‐defence trade‐off Sophie Colombie,Sylvain Prigent,Cédric Cassan,Ghislaine Hilbert‐masson,Christel Renaudet al. The Plant Journal, 2023, ⟨10.1111/tpj.16409⟩ Article dans une revue hal-04185814v1
Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard Marie-Hélène Andrieu,Isabelle Atienza,Cédric Cassan,Anne Marmagne,Daniel Justet al. NOV'AE - Numéros spéciaux, 2022, 05, pp.1-11. ⟨10.17180/novae-2022-NO-art05⟩ Article dans une revue hal-03766575v1
From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown Nadia Campos,Sophie Colombie,Annick Moing,Cedric Cassan,Delphine Amahet al. Journal of Experimental Botany, 2022, 73 (14), pp.4832-4849. ⟨10.1093/jxb/erac187⟩ Article dans une revue hal-03675840v1
Regulation of sugar metabolism genes in the N-dependent susceptibility of tomato stems to Botrytis cinerea Nathalie Lacrampe,Félicie Lopez-Lauri,Raphaël Lugan,Sophie Colombié,Jérôme Olivareset al. Annals of Botany, 2021, 127, pp.143-154. ⟨10.1093/aob/mcaa155⟩ Article dans une revue hal-02954833v2
The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole Alice Destailleur,Théo Poucet,Cecile Cabasson,Ana Paula Alonso,Jean-Christophe Cocuronet al. Metabolites, 2021, 11 (12), pp.848. ⟨10.3390/metabo11120848⟩ Article dans une revue hal-03505133v1
Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development Jinliang Chen,Bertrand Beauvoit,Michel Génard,Sophie Colombie,Annick Moinget al. New Phytologist, 2021, 230, pp.1489-1502. ⟨10.1111/nph.17260⟩ Article dans une revue hal-03152042v1
Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species Coffi Belmys Cakpo,Gilles Vercambre,Valentina Baldazzi,Léa Roch,Zhanwu Daiet al. Annals of Botany, 2020, 126 (3), pp.455-470. ⟨10.1093/aob/mcaa082⟩ Article dans une revue hal-02749663v1
Transcriptomic and proteomic data in developing tomato fruit Isma Belouah,Camille Bénard,Alisandra Denton,Melisande Blein-Nicolas,Thierry Balliauet al. Data in Brief, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩ Article dans une revue (data paper) hal-02539392v1
Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species Léa Roch,Sylvain Prigent,Holger Klose,Coffi-Belmys Cakpo,Bertrand Beauvoitet al. Journal of Experimental Botany, 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩ Article dans une revue hal-02904041v1
Modeling Protein Destiny in Developing Fruit Isma Belouah,Christine Nazaret,Pierre Pétriacq,Sylvain Prigent,Camille Bénardet al. Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩ Article dans une revue hal-02327302v1
Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit Guillaume Decros,Pierre Baldet,Bertrand Beauvoit,Rebecca Stevens,Amélie Flandinet al. Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.01091⟩ Article dans une revue (article de synthèse) hal-02619141v1
Peptide filtering differently affects the performances of XIC-based quantification methods Isma Belouah,Melisande Blein-Nicolas,Thierry Balliau,Yves Gibon,Michel Zivyet al. Journal of Proteomics, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩ Article dans une revue hal-02327322v1
Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling. Guillaume Decros,Bertrand Beauvoit,Sophie Colombie,Cecile Cabasson,Stéphane Bernillonet al. Frontiers in Plant Science, 2019, 10, pp.1201. ⟨10.3389/fpls.2019.01201⟩ Article dans une revue hal-02620533v1
Putting primary metabolism into perspective to obtain better fruits Bertrand Beauvoit,Isma Belouah,Nadia Bertin,Coffi Belmys Cakpo,Sophie Colombieet al. Annals of Botany, In press, 122 (1), pp.1-21. ⟨10.1093/aob/mcy057⟩ Article dans une revue hal-02539159v1
Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation Eric Soubeyrand,Sophie Colombié,Bertrand Beauvoit,Zhanwu Dai,Stéphanie Cluzetet al. Frontiers in Plant Science, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00421⟩ Article dans une revue hal-02533089v1
Fluxomics links cellular functional analyses to whole-plant phenotyping. Christophe Salon,Jean-Christophe Avice,Sophie Colombie,Martine Dieuaide Noubhani,Karine Gallardo-Guerreroet al. Journal of Experimental Botany, 2017, 68 (9), pp.2083-2098. ⟨10.1093/jxb/erx126⟩ Article dans une revue hal-01605024v1
Respiration climacteric in tomato fruits elucidated by constraint-based modelling. Sophie Colombié,Bertrand Beauvoit,Christine Nazaret,Camille Bénard,Gilles Vercambreet al. New Phytologist, 2016, 213 (4), pp.1726-1739. ⟨10.1111/nph.14301⟩ Article dans une revue hal-01445653v1
Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Camille Bénard,Stéphane Bernillon,Benoit Biais,Sonia Osorio,Mickael M. Maucourtet al. Journal of Experimental Botany, 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩ Article dans une revue hal-02641303v1
Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit. Sophie Colombié,Christine Nazaret,Camille Bénard,Benoît Biais,Virginie Menginet al. The Plant Journal, 2015, 81 (1), pp.24-39. ⟨10.1111/tpj.12685⟩ Article dans une revue hal-01445680v1
Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Benoit Biais,Camille Bénard,Bertrand Beauvoit,Sophie S. Colombie,Duyên D. Prodhommeet al. Plant Physiology, 2014, 164, pp.1204-1221. ⟨10.1104/pp.113.231241⟩ Article dans une revue hal-02639362v1
Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion. Bertrand Beauvoit,Sophie Colombié,Antoine Monier,Marie-Hélène Andrieu,Benoit Biaiset al. The Plant cell, 2014, 26 (8), pp.3224-3242. ⟨10.1105/tpc.114.127761⟩ Article dans une revue hal-01058814v1
Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells Marie M. Beurton-Aimar,Bertrand Beauvoit,Antoine Monier,Francois Vallee,Martine Dieuaide-Noubhaniet al. BMC Systems Biology, 2011, 5, pp.95. ⟨10.1186/1752-0509-5-95⟩ Article dans une revue hal-00629222v1
Interest of on-line monitoring electrical conductivity during wine fermentation Sophie S. Colombie,Eric Latrille,Jean-Marie J.-M. Sablayrolles European Food Research and Technology, 2008, 226 (6), pp.1553-1557. ⟨10.1007/s00217-007-0649-1⟩ Article dans une revue istex hal-02657621v1
Online estimation of assimilable nitrogen by electrical conductivity measurement during alcoholic fermentation in enological conditions Sophie S. Colombie,Eric Latrille,Jean-Marie J.-M. Sablayrolles Journal of Bioscience and Bioengineering, 2007, 103 (3), pp.229-235. ⟨10.1263/jbb.103.229⟩ Article dans une revue istex hal-02662582v1
Modeling of heat transfer in tanks during wine-making fermentation Sophie S. Colombie,Sophie Malherbe,Jean-Marie J.-M. Sablayrolles Food Control, 2007, 18 (8), pp.953-960. ⟨10.1016/j.foodcont.2006.05.016⟩ Article dans une revue istex hal-02666308v1
Modeling alcoholic fermentation in enological conditions: Feasibility and interest Sophie S. Colombie,Sophie Malherbe,Jean-Marie J.-M. Sablayrolles American Journal of Enology and Viticulture, 2005, 56 (3), pp.238-245 Article dans une revue hal-02681151v1
Nicotinic acid controls lactate production by K1-LDH: a Saccharomyces cerevisiae strain expressing a bacterial LDH gene Sophie S. Colombie,Jean-Marie J.-M. Sablayrolles Journal of Industrial Microbiology and Biotechnology, 2004, 31 (5), pp.209-215. ⟨10.1007/s10295-004-0138-5⟩ Article dans une revue istex hal-02678767v1
Control of lactate production by Saccharomyces cerevisiae expressing a bacterial LDH gene Sophie S. Colombie,Sylvie S. Dequin,Jean-Marie Sablayrolles Enzyme and Microbial Technology, 2003, 33 (1), pp.38-46. ⟨10.1016/S0141-0229(03)00082-6⟩ Article dans une revue istex hal-02673211v1
Water activity control: A way to improve the efficiency of continuous lipase esterification Sophie S. Colombie,R.J. Tweddell,J.S. Condoret,A. Marty Biotechnology and Bioengineering, 1998, 60 (3), pp.362-367 Article dans une revue hal-02690200v1

Communication dans un congrès (33)

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off Beaumont Chloé,Cassan Cédric,Sylvain Prigent,Hilbert-Masson Ghislaine,Renaud Christelet al. JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France Communication dans un congrès hal-04677435v1
Nitrogen metabolism in the growth-defence trade-off highlighted by constraint-based modelling to compare fruit development across species Sophie Colombie Workshop Modélisation du métabolisme, Mar 2024, Toulouse, France Communication dans un congrès hal-05114272v1
Metabolic fluxes estimated by constraint-based modelling highlight specific response of susceptible tomato (Solanum lycopersicum) stems infected by Botrytis cinerea under gradual nitrogen nutrition Nathalie Lacrampe,Raphaël Lugan,Doriane Dumont,Philippe C. Nicot,François Lecompteet al. 15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), Réseau francophone de métabolomique et fluxomique, May 2023, Perpignan, France Communication dans un congrès hal-04185066v1
Increased metabolic fluxes in tomato stems infected by Botrytis cinerea Nathalie Lacrampe,Raphaël Lugan,Philippe C. Nicot,François Lecompte,Sophie Colombie 18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France Communication dans un congrès hal-03695796v1
Increased metabolic fluxes in tomato stems infected by Botrytis cinerea Nathalie Lacrampe,Raphaël Lugan,Doriane Dumont,Philippe C. Nicot,François Lecompteet al. Tersys - Implanteus 1st Summer School, Jul 2022, Avignon, France Communication dans un congrès hal-05149404v1
High expression of sucrose synthase and fructokinase genes accompanies the nitrogen-dependent resistance of tomato stems to Botrytis cinerea Nathalie Lacrampe,Raphaël Lugan,Sophie Colombie,Jérôme Olivares,Philippe C. Nicotet al. Workshop on sugar allocation in plants, IJPB (Institut Jean Pierre Bourgin) - INRAE Versailles; EBI (Ecologie et Biologie des Interactions, CNRS/Université de Poitiers); Team SEVE (Laboratory CNRS-University, Transport de sucres et réponses des plantes aux contraintes abiotiques) - University of Poitiers., Oct 2021, Versailles, France Communication dans un congrès hal-03681107v1
An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism J.L. Chen,Bertrand Beauvoit,Sophie Colombie,Léa Roch,Coffi Belmys Cakpoet al. Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩ Communication dans un congrès hal-03125090v1
Peptide filtering differently affects the performances of XIC-based quantifcation methods Melisande Blein-Nicolas,Isma Belouah,Thierry Balliau,Yves Gibon,Michel Zivyet al. Journées Protéome Vert, Apr 2018, Paris, France Communication dans un congrès hal-03879922v1
HSM a reduced model of Central Carbon Metabolism: a dynamical approach Bertrand Beauvoit,Sophie Colombie,Razanne Issa,Jean-Pierre Mazat,Christine Nazaretet al. advances in Systems and Synthetic Biology, Mar 2017, Lyon, France Communication dans un congrès hal-01709748v1
Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property Sophie S. Colombie,Bertrand Beauvoit,Christine Nazaret,Camille Bénard,Cécile Cabassonet al. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France Communication dans un congrès hal-02740471v1
Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells Bertrand Beauvoit,Sophie Colombie,Razanne Issa,Jean-Pierre Mazat,Christine Nazaretet al. advances in Systems and Synthetic Biology, Mar 2016, Evry, France Communication dans un congrès hal-01709760v1
Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems Cecile Cabasson,Sophie Colombie,Bertrand Beauvoit,Christine Nazaret,Camille Benardet al. Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France Communication dans un congrès hal-02739719v1
Cellular and subcellular metabolomics reveal changes during tomato leaf development Clémence de Jaham,Benjamin Thiombiano,Camille Bénard,A.P. Alonso,J.C. Cocuronet al. 9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France Communication dans un congrès hal-02740382v1
Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality Sophie S. Colombie,Bertrand Beauvoit,Dominique D. Rolin,Stéphane Bernillon,Camille Bénardet al. 1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p Communication dans un congrès hal-02800371v1
Reconstruction du réseau métabolique de la tomate Florence Maurier,Clément Frainay,Fabien Jourdan,Sophie S. Colombie 9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France Communication dans un congrès hal-02742882v1
Systematic study of a metabolic network Bertrand P Beauvoit,Sophie Colombié,Jean-Pierre Mazat,Christine Nazaret,Sabine Pérès advances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p Communication dans un congrès hal-01108859v1
Modelling fluxes and metabolic network analysis of developing tomato fruits Sophie S. Colombie,Bertrand Beauvoit,Christine Nazaret,Martine Dieuaide Noubhani,Jean-Pierre Mazatet al. Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France Communication dans un congrès hal-02796388v1
Using developmental and diurnal compositional changes of tomato to study metabolism Camille Bénard,Stéphane Bernillon,Benoit Biais,Sonia Osorio-Algar,Mickael M. Maucourtet al. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p Communication dans un congrès hal-02793195v1
Using Topological Analysis to Study Metabolism of Heterotrophic Plant Cell Network Marie Beurton-Aimar,Vu Ngoc Tung Nguyen,Sophie S. Colombie BioNetVisA workshop (join with ECCB conference,, Oct 2014, Strasbourg, France Communication dans un congrès hal-02000486v1
MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in France Dominique Rolin,Floriant Bellvert,Justine Bertrand-Michel,Cécile Canlet,Richard Coleet al. MERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapore, Singapore Communication dans un congrès hal-02798242v1
La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes Dominique D. Rolin,Bertrand Beauvoit,Stéphane Bernillon,Camille Bénard,Patricia Balliaset al. 8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p Communication dans un congrès hal-02801036v1
The tomato fruit development with a constraint-based model Sophie S. Colombie,Christine Nazaret,Bertrand Beauvoit,Marion Solé,Martine Dieuaide Noubhaniet al. Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom Communication dans un congrès hal-02804536v1
MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomics Dominique D. Rolin,Alice A. Agasse,Justine Bertrand-Michel,R. R. Cole,Sophie S. Colombieet al. Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom Communication dans un congrès hal-01002247v1
MetaboHUB: une infrastructure nationale au service de la métabolomique Dominique D. Rolin,Alice A. Agasse,Justine Bertrand-Michel,R. R. Cole,B. B. Colschet al. Séance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France Communication dans un congrès hal-01002248v1
MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics Dominique D. Rolin,Alice A. Agasse,Justine Bertrand-Michel,R. R. Cole,B. B. Colschet al. 7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France Communication dans un congrès hal-01002241v1
Implication of the vacuolar AtPAP26 in the sugars metabolism in Arabidopsis thaliana roots Antoine Monier,Sarah Monllor,Marie-Hélène Andrieu,Sophie S. Colombie,Frédéric Delmaset al. 5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France Communication dans un congrès hal-02749345v1
Elementary mode analysis of the central metabolism of plant cells Sophie S. Colombie,Bertrand Beauvoit,Nicolas Parisey,Katia Pianelli,François Valléeet al. 4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France Communication dans un congrès hal-02752805v1
Elementary flux mode analysis of the central metabolism of plant cells François Vallée,Sophie S. Colombie,Bertrand Beauvoit,Nicolas Parisey,Katia Pianelliet al. 7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg Communication dans un congrès hal-02752087v1
Identification of functional hubs through metabolic networks M. Beurton-Aimar,N. Parisey,Francois F. Vallée,Sophie S. Colombie 12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark Communication dans un congrès hal-02754488v1
TIM/WIM: A Set of Tools to Interface Modelling in Biology. Francois Vallee,M. Beurton-Aimar,N. Parisey,Florent Collot,Sophie Colombié European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy Communication dans un congrès hal-00629019v1
TIM, une interface de saisie pour les données du métabolisme Nicolas Parisey,Florent Collot,Raphael Henri,Bertrand Beauvoit,Martine Dieuaide Noubhaniet al. 3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France Communication dans un congrès hal-02752505v1
Mise en place d'une approche de fluxomique dans le fruit de tomate Raphael Henri,Katia Pianelli,Marie-Hélène Andrieu,Bertrand Beauvoit,Sophie S. Colombieet al. 3. Journées, Feb 2008, Bordeaux, France Communication dans un congrès hal-02757883v1
Quantification de flux métaboliques dans le fruit de tomate Raphael Henri,Marie-Hélène Andrieu,Sophie S. Colombie,Philippe Raymond,Dominique D. Rolinet al. 2. Journées, Dec 2006, Saint Sauves d'Auvergne, France Communication dans un congrès hal-02757225v1

Poster de conférence (33)

CABiosE: Comparative Analyses of Biostimulants effects on tomato crop and their associated microbiots under water stress conditions Marine Honoré,Cecile Cabasson,Pierre Pétriacq,Pierre Joly,Sophie Colombie Journées Jeunes Chercheurs du département BAP INRAE, May 2025, Bordeaux, France Poster de conférence hal-05190181v1
CABiosE : Comparative Analyses of Biostimulant Effects on tomato crops and their associated microbiota, under water stress conditions. Marine Honoré,Cecile Cabasson,Pierre Joly,Pierre Pétriacq,Sophie Colombieet al. 17émes journées scientifiques du RFMF, Jun 2025, Paris, France Poster de conférence hal-05190283v1
Large scale plant protein turnover measurement Willy Vincent Bienvenut,Marie-Hélène Andrieu,Olivier Langella,Thierry Balliau,Sophie Colombieet al. Annual ASMS conference, Jun 2024, Anaheim (CA), United States Poster de conférence hal-04590280v1
MetaboHUB – Bordeaux Metabolome Facility Claudia Rouveyrol,Millena C. Barros Santos,David Benaben,Yohann Boutté,Cecile Cabassonet al. Metabolomics 2024, Jun 2024, Osaka, Japan. ⟨10.15454/1.5572412770331912E12⟩ Poster de conférence hal-05194981v1
Metabolic characterization and flux modeling of the green microalga Coelastrella sp. in response to uranium-induced stress Mathilde Spiesser,Nahikari Prevost,Camille Beaulier,Fabienne Devime,Galeone Adrienet al. 16èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, Jun 2024, Saint-Malo, France Poster de conférence hal-04926997v1
Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems Nathalie Lacrampe,Sophie Colombie,Doriane Dumont,Philippe C. Nicot,François Lecompteet al. 15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), May 2023, Perpignan, France Poster de conférence hal-04185467v1
Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant. Malo Le Boulch,Millena C. Barros Santos,Susana Silvestre,Dominik Grosskinsky,Anaïs da Costaet al. Metabolomics 2023, Jun 2023, Niagara falls, Canada Poster de conférence hal-04396004v1
Detailed characterization of the responses and adaptation of a green microalga to heavy meta-induced stress Nahikari Prevost,Cédric Cassan,Millena Barros Santos,Camille Beaulier,Stéphane Ravanelet al. 15èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2023, Perpignan, France Poster de conférence hal-04926963v1
Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling Léa Roch,Coffi Belmys Cakpo,Catherine Deborde,Mickael Maucourt,Thierry Bertonet al. EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018 Poster de conférence hal-02737961v1
Comparative study of primary metabolite patterns in diverse fleshy fruit species Léa Roch,C B Cakpo,Thierry Berton,Stéphane Bernillon,Stéphanie Arrivaultet al. MetaboMeeting, Dec 2017, Birmingham (UK), United Kingdom Poster de conférence hal-04955742v1
Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits Zhanwu Dai,Bertrand Beauvoit,Sophie Colombie,Michel Génard,Gilles Vercambreet al. 2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017 Poster de conférence hal-02735987v1
The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit development Isma Belouah,Thierry Balliau,Camille Benard,Bertrand Beauvoit,Sophie Colombieet al. Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. , 2016 Poster de conférence hal-01603579v1
How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and Basics Christine Nazaret,Sophie Colombié,Bertrand Beauvoit,Martine Dieuaide-Noubhani,Jean-Pierre Mazatet al. International Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany. Poster de conférence hal-01445608v1
Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis Angela Machado Vieira,Stéphanie Cluzet,Catherine Deborde,Ghislaine Hilbert,Annick Moinget al. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016 Poster de conférence hal-02741756v1
Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism Léa Roch,Stéphane Bernillon,Mickael Maucourt,Catherine Deborde,Camille Benardet al. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts Poster de conférence hal-01606414v1
Modelling metabolic fluxes during tomato fruit development Sophie Colombie,Bertrand Beauvoit,Christine Nazaret,Camille Benard,Martine Dieuaide Noubhaniet al. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 Poster de conférence hal-01601445v1
Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism Léa Roch,Stéphane Bernillon,Mickael M. Maucourt,Catherine Deborde,Camille Bénardet al. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015 Poster de conférence hal-02739251v1
Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions Stéphane Bernillon,Stéphanie Arrivault,Manuela Guenther,Regina Feil,Patricia Balliaset al. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015 Poster de conférence hal-02740588v1
Hub Reactions in Storage of Selected Compounds in Heterotrophic Plant Cell Network Vu Ngoctung Nguyen,Sophie S. Colombie,Marie Beurton-Aimar Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal. , 1 p., 2015 Poster de conférence hal-02793442v1
Reconstruction du réseau métabolique de la tomate Florence Maurier,Clément Frainay,Fabien Jourdan,Sophie S. Colombie 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015 Poster de conférence hal-02742705v1
Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation Clémence de Jaham,Benjamin Thiombiano,Camille Benard,A. P. Alonso,J. C. Cocuronet al. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts Poster de conférence hal-01603745v1
Reconstruction du réseau métabolique de la tomate Florence Maurier,Fabien Jourdan,Sophie S. Colombie 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014 Poster de conférence hal-02799581v1
Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation E. Soubeyrand,Sophie S. Colombie,Zhanwu Z. Dai,S. Cluzet,Ghislaine Hilbertet al. ICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014 Poster de conférence hal-02792547v1
Combining metabolite and enzymatic profiling during tomato fruit development Mickael M. Maucourt,Camille Bénard,Benoit Biais,Patricia Ballias,Catherine Debordeet al. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014 Poster de conférence hal-02793996v1
Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation Eric Soubeyrand,Sophie Colombie,Zhanwu Dai,Stéphanie Cluzet,Ghislaine Hilbertet al. Macrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014 Poster de conférence hal-02739299v1
Minimal cut sets and its application to study metabolic pathway structures N.T.V. Nguyen,Marie Beurton-Aymar,Sophie S. Colombie Thematic Research School on the Advances in Systems and Synthetic Biology - Modelling Complex Biological Systems in the Context of Genomics, Mar 2013, La Colle-sur-Loup, France. 2013 Poster de conférence hal-02805827v1
Heterotrophic plant cell network analysis: comparison between EFMs and MCSs V.N.T. Nguyen,Marie Beurton-Aymar,Sophie S. Colombie Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. , 2013 Poster de conférence hal-02804631v1
Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions Eric Soubeyrand,Sophie S. Colombie,Isabelle Merlin,Ghislaine Hilbert,Bertrand Beauvoitet al. Plant Biology 2013, Jul 2013, Rhode Island, United States. 2013 Poster de conférence hal-02804615v1
Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit development Bertrand Beauvoit,Sophie S. Colombie,Christine Nazaret,Marie-Hélène Andrieu,Martine Dieuaide Noubhaniet al. Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013 Poster de conférence hal-02809066v1
A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions Eric Soubeyrand,Sophie S. Colombie,Isabelle Merlin,Ghislaine Hilbert,Bertrand Beauvoitet al. 7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013 Poster de conférence hal-02810027v1
Compositional changes in fruit pericarp of water-stressed tomato in greenhouse Annick Moing,Benoit Biais,Mickael M. Maucourt,Camille Benard,Patricia Balliaset al. Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012 Poster de conférence hal-02805488v1
A simple model of tomato metabolism Bertrand Beauvoit,Benoit Biais,Sophie S. Colombie,Martine Dieuaide,Yves Y. Gibonet al. International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012 Poster de conférence hal-02806898v1
Analysis of metabolic networks using minimal cut set computting Marie Beurton-Aimar,N.T. Nguyen-Vu,Sophie S. Colombie International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012 Poster de conférence hal-02805260v1

Chapitre d'ouvrage (2)

Metabolic Network Reconstruction and Their Topological Analysis Marie Beurton-Aimar,Vu Ngoc Tung Nguyen,Sophie Colombie Plant Metabolic Flux Analysis,, 2014 Chapitre d'ouvrage hal-02000462v1
Metabolic network reconstruction and their topological analysis Marie Beurton-Aymar,Tung Vu-Ngoc Nguyen,Sophie S. Colombie Plant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_2⟩ Chapitre d'ouvrage hal-02796948v1

Pré-publication, Document de travail (1)

From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown N.A. Campos,Sophie Colombie,Annick Moing,Cédric Cassan,D. Amahet al. 2021 Pré-publication, Document de travail hal-03659204v1

HDR (1)

De l’optimisation de bioprocédés à l'étude du métabolisme des fruits axée sur la modélisation Sophie Colombie Biologie végétale. Université de Bordeaux, 2016 HDR tel-02796280v1