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High‐fat diets: You are what you eat….your extracellular vesicles too!

Sophie Rome , Stefano Tacconi
Journal of Extracellular Vesicles, 2023, 13 (1), pp.e12382. ⟨10.1002/jev2.12382⟩
Journal articles hal-04379547v1
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Muscle and Adipose Tissue Communicate with Extracellular Vesicles

Sophie Rome
International Journal of Molecular Sciences, 2022, 23 (13), pp.7052. ⟨10.3390/ijms23137052⟩
Journal articles hal-03844141v1
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Blood-derived miRNA levels are not correlated with metabolic or anthropometric parameters in obese pre-diabetic subjects but with systemic inflammation

P. Paramasivam , Emmanuelle Meugnier , K. Gokulakrishnan , H. Ranjini , L. R. Staimez
PLoS ONE, 2022, 17 (2), pp.e0263479. ⟨10.1371/journal.pone.0263479⟩
Journal articles inserm-03752855v1
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Adipocyte-derived extracellular vesicles in health and diseases: Nano-packages with vast biological properties

S. Le Lay , S. Rome , X. Loyer , L. Nieto
FASEB BioAdvances, 2021, 3 (6), pp.407-419. ⟨10.1096/fba.2020-00147⟩
Journal articles inserm-03344398v1
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Epigenetics in atrial fibrillation: A reappraisal

R. Doñate Puertas , Rakesh Arora , S. Rome , B. Asatryan , H. L. Roderick
Heart Rhythm, 2021, 18 (5), pp.824-832. ⟨10.1016/j.hrthm.2021.01.007⟩
Journal articles inserm-03344369v1
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Profiling of ob/ob mice skeletal muscle exosome-like vesicles demonstrates combined action of miRNAs, proteins and lipids to modulate lipid homeostasis in recipient cells

Audrey Jalabert , Laura Reininger , Emmanuelle Berger , Yohann Coute , Emmanuelle Meugnier
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-00983-3⟩
Journal articles hal-03420029v1
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Updating MISEV: Evolving the minimal requirements for studies of extracellular vesicles

K. W. Witwer , D. C. Goberdhan , L. O'Driscoll , C. Théry , J. A. Welsh
Journal of Extracellular Vesicles, 2021, 10 (14), pp.e12182. ⟨10.1002/jev2.12182⟩
Journal articles inserm-03582039v1
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Adipocyte-Derived Extracellular Vesicles: State of the Art

S. Rome , A. Blandin , S. Le Lay
International Journal of Molecular Sciences, 2021, 22 (4), pp.1788. ⟨10.3390/ijms22041788⟩
Journal articles inserm-03328427v1
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Bis(monoacylglycero)phosphate, a new lipid signature of endosome-derived extracellular vesicles

M. Rabia , V. Leuzy , C. Soulage , A. Durand , B. Fourmaux
Journal articles hal-02902561v1
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Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells

Scheila Gabriele Mucha , Mariana G. Ferrarini , Carol Moraga , Alex Di Genova , Laurent Guyon
Scientific Reports, 2020, 10 (13707), ⟨10.1038/s41598-020-70040-y⟩
Journal articles hal-02916844v1
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Use of Nanovesicles from Orange Juice to Reverse Diet-Induced Gut Modifications in Diet-Induced Obese Mice

Emmanuelle Berger , Pascal Colosetti , Audrey Jalabert , Emmanuelle Meugnier , Oscar Wiklander
Molecular Therapy - Methods and Clinical Development, 2020, 18, pp.880-892. ⟨10.1016/j.omtm.2020.08.009⟩
Journal articles hal-02952992v1

Biological properties of plant-derived extracellular vesicles

S. Rome
Food and Function, 2019, 10 (2), pp.529--538. ⟨10.1039/c8fo02295j⟩
Journal articles hal-02195201v1

MicroRNAs from urinary extracellular vesicles are non-invasive early biomarkers of diabetic nephropathy in type 2 diabetes patients with the ‘Asian Indian phenotype’

P. Prabu , S. Rome , C. Sathishkumar , Caroline Gastebois , Emmanuelle Fouilloux-Meugnier
Diabetes & Metabolism, 2019, 45 (3), pp.276-285. ⟨10.1016/j.diabet.2018.08.004⟩
Journal articles hal-02625193v1
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Skeletal Muscle-Released Extracellular Vesicles: State of the Art

S. Rome , A. Forterre , M. L. Mizgier , K. Bouzakri
Frontiers in Physiology, 2019, 10, pp.13. ⟨10.3389/fphys.2019.00929⟩
Journal articles hal-02466242v1
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Lymphocyte-derived exosomal microRNAs promote pancreatic beta cell death and may contribute to type 1 diabetes development

Claudiane Guay , Janine K. Kruit , Sophie Rome , Veronique Menoud , Niels L. Mulder
Cell Metabolism, 2019, 29 (2), pp.348-361. ⟨10.1016/j.cmet.2018.09.011⟩
Journal articles hal-02620397v1
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Obesity paradox in cancer: Is bigger really better?

Beata Ujvari , Camille Jacqueline , Dorothée Missé , Valentin Amar , Jay Fitzpatrick
Evolutionary Applications, 2019, 12 (6), pp.1092-1095. ⟨10.1111/eva.12790⟩
Journal articles hal-02433971v1

Lymphocyte-Derived Exosomal MicroRNAs Promote Pancreatic beta Cell Death and May Contribute to Type 1 Diabetes Development

C. Guay , J. K. Kruit , Sophie Rome , V. Menoud , N. L. Mulder
Cell Metab, 2018
Journal articles hal-02003439v1

MicroRNAs from urinary extracellular vesicles are non-invasive early biomarkers of diabetic nephropathy in type 2 diabetes patients with the ‘Asian Indian phenotype’

P. Prabu , Sophie Rome , C. Sathishkumar , Caroline Gastebois , E. Meugnier
Journal of Diabetes & Metabolism, 2018
Journal articles hal-01981573v1
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Analysis of the microRNA signature in left atrium from patients with valvular heart disease reveals their implications in atrial fibrillation

Rosa Donate Puertas , Audrey Jalabert , Emmanuelle Fouilloux-Meugnier , Vanessa Euthine , Philippe Chevalier
PLoS ONE, 2018, 13 (5), ⟨10.1371/journal.pone.0196666⟩
Journal articles hal-02626365v1
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Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

Clotilde Thery , Kenneth Witwer , Elena Aikawa , Maria Jose Alcaraz , Johnathon Anderson
Journal of Extracellular Vesicles, 2018, 7 (1), pp.1535750. ⟨10.1080/20013078.2018.1535750⟩
Journal articles hal-02323217v1

Atrial fibrillation is associated with hypermethylation in human left atrium, and treatment with decitabine reduces atrial tachyarrhythmias in spontaneously hypertensive rats

R. Doñate Puertas , E. Meugnier , C. Romestaing , C. Rey , E. Morel
Translational Research, The Journal of Laboratory and Clinical Medicine, 2017, 184, pp.57 - 67.e5. ⟨10.1016/j.trsl.2017.03.004⟩
Journal articles hal-01621517v1
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Changes in diet associated with cancer: An evolutionary perspective

Frederic Thomas , Sophie Rome , Frederic Mery , Erika Dawson , Jacques Montagne
Evolutionary Applications, 2017, 10 (7), pp.651-657. ⟨10.1111/eva.12465⟩
Journal articles hal-01675822v1
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Depleting extracellular vesicles from fetal bovine serum alters proliferation and differentiation of skeletal muscle cells in vitro

Hala Aswad , A. Jalabert , Sophie Rome
BMC Biotechnology, 2016, 16, pp.32. ⟨10.1186/s12896-016-0262-0⟩
Journal articles hal-01850046v1
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Transition from physical activity to inactivity increases skeletal muscle miR-148b content and triggers insulin resistance

Caroline Gastebois , Stéphanie Chanon , Sophie Rome , Christine Durand , Elise Pelascini
Physiological Reports, 2016, 4 (17), pp.e12902. ⟨10.14814/phy2.12902⟩
Journal articles hal-01398592v1

Multiple microRNA regulation of lipoprotein lipase gene abolished by 3'UTR polymorphisms in a triglyceride-lowering haplotype harboring p.Ser474Ter

Cyrielle Caussy , Sybil Charriere , Aline Meirhaeghe , Jean Dallongeville , Etienne Lefai
Atherosclerosis, 2016, 246, pp.280-286. ⟨10.1016/j.atherosclerosis.2016.01.010⟩
Journal articles hal-01986056v1

Pathways implicated in tadalafil amelioration of duchenne muscular dystrophy

Valeria de Arcangelis , Georgios Strimpakos , Francesca Gabanella , Nicoletta Corbi , Siro Luvisetto
Journal of Cellular Physiology, 2016, 231 (1), pp.224-232. ⟨10.1002/jcp.25075⟩
Journal articles hal-01595624v1
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miRNA-375 a Sensor of Glucotoxicity Is Altered in the Serum of Children with Newly Diagnosed Type 1 Diabetes

Lucien Marchand , Audrey Jalabert , Emmanuelle Fouilloux-Meugnier , Kathleen van Den Hende , Nicole Fabien
Journal of diabetes research, 2016, 2016, pp.1-7. ⟨10.1155/2016/1869082⟩
Journal articles hal-01850359v1
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Circulating MiRNAs of 'Asian Indian Phenotype' Identified in Subjects with Impaired Glucose Tolerance and Patients with Type 2 Diabetes

P. Prabu , Sophie Rome , C. Sathishkumar , S. Aravind , B. Mahalingam
PLoS ONE, 2015, 10 (5), pp.e0128372. ⟨10.1371/journal.pone.0128372⟩
Journal articles hal-01850471v1
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Horizontal transfer of exosomal microRNAs transduce apoptotic signals between pancreatic beta-cells

C. Guay , V. Menoud , Sophie Rome , R. Regazzi
Cell Communication and Signaling, 2015, 13, pp.17. ⟨10.1186/s12964-015-0097-7⟩
Journal articles hal-01850557v1
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Use of miRNAs in biofluids as biomarkers in dietary and lifestyle intervention studies

Sophie Rome
Genes Nutr, 2015, 10 (5), pp.483. ⟨10.1007/s12263-015-0483-1⟩
Journal articles hal-01850660v1
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Diagnostic Value of Cell-free Circulating MicroRNAs for Obesity and Type 2 Diabetes: A Meta-analysis

Clément Villars , Lucien Marchand , Charles Thivolet , Sophie Rome
J Mol Biomark Diagn, 2015, 6 (6), ⟨10.4172/2155-9929.1000251⟩
Journal articles hal-01850534v1

Long-standing arterial hypertension is associated with Pitx2 down-regulation in a rat model of spontaneous atrial tachyarrhythmias

A. Scridon , Emmanuelle Fouilloux-Meugnier , Emmanuelle Loizon , Sophie Rome , C. Julien
EP-Europace, 2015, 17 (1), pp.160-165. ⟨10.1093/europace/euu139⟩
Journal articles hal-01602102v1

A TG-associated minor LPL haplotype supresses miR-29 binding on LPL 3'UTR

C. Caussy , S. Charrière , J. Dallongeville , Etienne Lefai , V. Euthine
Atherosclerosis, 2015, 241 (1), pp.e12. ⟨10.1016/j.atherosclerosis.2015.04.059⟩
Journal articles hal-02049002v1

Myotube-derived exosomal miRNAs downregulate Sirtuin1 in myoblasts during muscle cell differentiation

A. Forterre , A. Jalabert , Karim Chikh , S. Pesenti , V. Euthine
Cell Cycle, 2014, 13 (1), pp.78-89. ⟨10.4161/cc.26808⟩
Journal articles hal-01859385v1

Profiling of circulating microRNAs reveals common microRNAs linked to type 2 diabetes that change with insulin sensitization

Francisco J. Ortega , Josep M. Mercader , José Maria Moreno-Navarrete , Oscar Rovira , Ester Guerra
Diabetes Care, 2014, 37 (5), pp.1375-1383. ⟨10.2337/dc13-1847⟩
Journal articles hal-01859430v1
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Exosomes participate in the alteration of muscle homeostasis during lipid-induced insulin resistance in mice

Hala Aswad , Alexis Forterre , Oscar P. B. Wiklander , Guillaume Vial , Emmanuelle Danty-Berger
Diabetologia, 2014, 57 (10), pp.2155-2164. ⟨10.1007/s00125-014-3337-2⟩
Journal articles hal-01376852v1
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Age-dependent myocardial transcriptomic changes in the rat. Novel insights into atrial and ventricular arrhythmias pathogenesis

Alina Scridon , E. Meugnier , Emmanuelle Loizon , Marcel Perian , Sophie Rome
Revista Romana De Medicina De Laborator, 2014, 22 (1), pp.9-23. ⟨10.2478/rrlm-2014-0001⟩
Journal articles hal-02638710v1

An APOA5 3' UTR variant associated with plasma triglycerides triggers APOA5 downregulation by creating a functional miR-485-5p binding site

Cyrielle Caussy , S. Charriere , C. Marcais , M. Di Filippo , A. Sassolas
American Journal of Human Genetics, 2014, 94 (1), pp.129-34. ⟨10.1016/j.ajhg.2013.12.001⟩
Journal articles hal-01859007v1
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Proteomic analysis of C2C12 myoblast and myotube exosome-like vesicles: a new paradigm for myoblast-myotube cross talk?

A. Forterre , A. Jalabert , Eric Berger , M. Baudet , Karim Chikh
PLoS ONE, 2014, 9 (1), pp.e84153. ⟨10.1371/journal.pone.0084153⟩
Journal articles hal-01859453v1

Robust coordination of cardiac functions from gene co-expression reveals a versatile combinatorial transcriptional control

C. Cerutti , G. Bricca , Sophie Rome , C. Z. Paultre , M. P. Gustin
Mol Biosyst, 2014, 10 (9), pp.2415-25. ⟨10.1039/c4mb00024b⟩
Journal articles hal-01859440v1
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Proteomic Analysis of C2C12 Myoblast and Myotube Exosome-Like Vesicles: A New Paradigm for Myoblast-Myotube Cross Talk?

Alexis Forterre , Audrey Jalabert , Emmanuelle Berger , Mathieu Baudet , Karim Chikh
PLoS ONE, 2014, 9 (1), pp.e84153. ⟨10.1371/journal.pone.0084153⟩
Journal articles hal-04186866v1
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Endometrial exosomes/microvesicles in the uterine microenvironment: a new paradigm for embryo-endometrial cross talk at implantation

York Hunt Ng , Sophie Rome , Audrey Jalabert , Alexis Forterre , Harmeet Singh
PLoS ONE, 2013, 8 (3), ⟨10.1371/journal.pone.0058502⟩
Journal articles hal-02650910v1

Are extracellular microRNAs involved in type 2 diabetes and related pathologies?

Sophie Rome
Clinical Biochemistry, 2013, 46 (10-11), pp.937-945. ⟨10.1016/j.clinbiochem.2013.02.018⟩
Journal articles hal-02644278v1

MicroRNAs contribute to compensatory β cell expansion during pregnancy and obesity

Cécile Jacovetti , Amar Abderrahmani , Géraldine Parnaud , Jean-Christophe Jonas , Marie-Line Peyot
Journal of Clinical Investigation, 2012, 122 (10), pp.3541-3551. ⟨10.1172/JCI64151⟩
Journal articles hal-01982002v1
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SREBP-1 transcription factors regulate skeletal muscle cell size by controlling protein synthesis through myogenic regulatory factors.

Kevin Dessalle , Vanessa Euthine , Stéphanie Chanon , Joffrey de Larichaudy , Isao Fujii
PLoS ONE, 2012, 7 (11), pp.e50878. ⟨10.1371/journal.pone.0050878⟩
Journal articles inserm-00809752v1

alpha v integrin processing interferes with the cross-talk between alpha v beta 5/beta 6 and alpha 2 beta 1 integrins

Céline Defilles , Marie-Pierre Montero , Jean-Claude Lissitzky , Sophie Rome , Carole Siret
Biology of the Cell, 2011, 103 (11), pp.519 - 529. ⟨10.1042/BC20100147⟩
Journal articles hal-02650190v1

Gene expression profiling in peripheral blood cells of patients with rheumatoid arthritis in response to anti-TNF-alpha treatments.

E. Meugnier , F. Coury , J. Tebib , C. Ferraro-Peyret , S. Rome
Physiological Genomics, 2011, 43 (7), pp.365-71. ⟨10.1152/physiolgenomics.00127.2010⟩
Journal articles hal-00851725v1
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Analysis of lifestyle and metabolic predictors of visceral obesity with Bayesian Networks.

Alex Aussem , André Tchernof , Sérgio Rodrigues de Morais , Sophie Rome
BMC Bioinformatics, 2010, 11 (1), pp.487. ⟨10.1186/1471-2105-11-487⟩
Journal articles inserm-00663887v1
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A new role for sterol regulatory element binding protein 1 transcription factors in the regulation of muscle mass and muscle cell differentiation.

Virginie Lecomte , Emmanuelle Meugnier , Vanessa Euthine , Christine Durand , Damien Freyssenet
Molecular and Cellular Biology, 2010, 30 (5), pp.1182-98. ⟨10.1128/MCB.00690-09⟩
Journal articles inserm-00817651v1

Transcriptome profiling in response to adiponectin in human cancer-derived cells.

Emmanuelle Berger , Sophie Rome , Nathalie Vega , Claire Ciancia , Hubert Vidal
Physiological Genomics, 2010, 42A (1), pp.61-70. ⟨10.1152/physiolgenomics.00013.2010⟩
Journal articles hal-01837861v1

A New Role for Sterol Regulatory Element Binding Protein 1 Transcription Factors in the Regulation of Muscle Mass and Muscle Cell Differentiation

V. Lecomte , E. Meugnier , V. Euthine , C. Durand , D. Freyssenet
Molecular and Cellular Biology, 2010, 30 (5), pp.1182-1198
Journal articles hal-01982021v1

The microRNA Signature in Response to Insulin Reveals Its Implication in the Transcriptional Action of Insulin in Human Skeletal Muscle and the Role of a Sterol Regulatory Element-Binding Protein-1c/Myocyte Enhancer Factor 2C Pathway

A. Granjon , M.-P. Gustin , Jennifer Rieusset , Etienne Lefai , E. Meugnier
Diabetes, 2009, 58 (11), pp.2555-2564
Journal articles hal-01982029v1
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The microRNA signature in response to insulin reveals its implication in the transcriptional action of insulin in human skeletal muscle and the role of a sterol regulatory element-binding protein-1c/myocyte enhancer factor 2C pathway.

Aurélie Granjon , Marie-Paule Gustin , Jennifer Rieusset , Etienne Lefai , Emmanuelle Meugnier
Diabetes, 2009, 58 (11), pp.2555-64. ⟨10.2337/db09-0165⟩
Journal articles inserm-00808523v1

Microarray analysis of genes with impaired insulin regulation in the skeletal muscle of type 2 diabetic patients indicates the involvement of basic helix-loop-helix domain-containing, class B, 2 protein (BHLHB2)

Sophie Rome , E. Meugnier , V. Lecomte , V. Berbe , J. Besson
Diabetologia, 2009, 52 (9), pp.1899-1912
Journal articles hal-01982031v1

Microarray analyses of SREBP-1a and SREBP-1c target genes identify new regulatory pathways in muscle

Sophie Rome , Virginie Lecomte , Emmanuelle Fouilloux-Meugnier , Jennifer Rieusset , Cyrille Debard
Physiological Genomics, 2008, 34 (3), pp.327-337
Journal articles hal-01982035v1
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Microarray analyses of SREBP-1a and SREBP-1c target genes identify new regulatory pathways in muscle.

Sophie Rome , Virginie Lecomte , Emmanuelle Meugnier , Jennifer Rieusset , Cyrille Debard
Physiological Genomics, 2008, 34 (3), pp.327-37. ⟨10.1152/physiolgenomics.90211.2008⟩
Journal articles inserm-00809732v1

Regulation of gene expression by glucose

Emmanuelle Fouilloux-Meugnier , Sophie Rome , Hubert Vidal
Current Opinion in Clinical Nutrition and Metabolic Care, 2007, 10 (4), pp.518-522. ⟨10.1097/MCO.0b013e3281298fef⟩
Journal articles hal-01982045v1

Changes in Gene Expression in Skeletal Muscle in Response to Fat Overfeeding in Lean Men

Emmanuelle Fouilloux-Meugnier , Cécile Bossu , Myriam Oliel , Sakina Jeanne , Angélique Michaut
Obesity, 2007, 15 (11), pp.2583-2594. ⟨10.1038/oby.2007.310⟩
Journal articles hal-01982038v1

Acute Hyperglycemia Induces a Global Downregulation of Gene Expression in Adipose Tissue and Skeletal Muscle of Healthy Subjects

Emmanuelle Fouilloux-Meugnier , May Faraj , Sophie Rome , Geneviève Beauregard , Angélique Michaut
Diabetes, 2007, 56 (4), pp.992-999. ⟨10.2337/db06-1242⟩
Journal articles hal-01982048v1

Treatment for 2 mo with n−3 polyunsaturated fatty acids reduces adiposity and some atherogenic factors but does not improve insulin sensitivity in women with type 2 diabetes: a randomized controlled study

Morvarid Kabir , Geraldine Skurnik , Nadia Naour , Valeria Pechtner , Emmanuelle Fouilloux-Meugnier
The American Journal of Clinical Nutrition, 2007, 86 (6), pp.1670-1679. ⟨10.1093/ajcn/86.5.1670⟩
Journal articles hal-01982042v1

Nitrogen-fixing sinorhizobia with Medicago laciniata constitute a novel biovar (bv. medicaginis) of S-meliloti

Maria del Carmen Villegas , Sophie Rome , Lucette Maure , Odile Domergue , Louis Gardan
Systematic and Applied Microbiology, 2006, 29 (7), pp.526-538. ⟨10.1016/j.syapm.2005.12.008⟩
Journal articles hal-02660976v1
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Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Corneliu Henegar , Raffaella Cancello , Sophie Rome , Hubert Vidal , Karine Clément
Journal of Bioinformatics and Computational Biology, 2006, 4 (4), pp.833-52. ⟨10.1142/S0219720006002181⟩
Journal articles inserm-00147232v1
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Constraint-based Formal Concept Mining and its Application to Microarray Data Analysis

Jérémy Besson , Céline Robardet , Jean-François Boulicaut , Sophie Rome
Intelligent Data Analysis, 2005, 9 (1), pp.59-82
Journal articles hal-01535568v1

The ubiquitin-proteasome pathway is a new partner for the control of insulin signaling.

Sophie Rome , Emmanuelle Fouilloux-Meugnier , Hubert Vidal
Current Opinion in Clinical Nutrition and Metabolic Care, 2004, 7 (3), pp.249-54
Journal articles hal-01982052v1

Evidence for the absence of an intestinal adaptive mechanism to compensate for C. parvum -induced amino acid malabsorption in suckling rats

A. Topouchian , Jean-François Huneau , L. Barbot , S. Rome , J. Gobert
Parasitology Research, 2003, 91 (3), pp.197-203. ⟨10.1007/s00436-003-0956-9⟩
Journal articles hal-02179746v1

The Regionalization of PepT1, NBAT and EAAC1 Transporters in the Small Intestine of Rats Are Unchanged from Birth to Adulthood

Sophie Rome , Laurence Barbot , Eugénie Windsor , Nathalie Kapel , Viviane Tricottet
Journal of Nutrition, 2002, 132 (5), pp.1009-1011. ⟨10.1093/jn/132.5.1009⟩
Journal articles hal-02179789v1

Metabolic evidence for adaptation to a high protein diet in rats

C. Jean , Sophie Rome , Veronique Mathe , J.F. Huneau , N. Aattouri
Journal of Nutrition, 2001, 131, pp.91-98
Journal articles hal-02680956v1

Distribution of phenolic compounds within seed and seedlings of two Vicia faba cvs differing in their seed tannin content, and study of their seed and root phenolic exudations

F. Bekkara , M. Jay , M.R. Viricel , Sophie Rome
Plant and Soil, 1998, 203, pp.27-36. ⟨10.1023/A:1004365913726⟩
Journal articles hal-02697791v1

Rapid identification of Medicago nodulating strains by using two oligonucleotide probes complementary to 16S rDNA sequences

Sophie Rome , Jean Claude Cleyet Marel , L.A. Materon , Philippe Normand , B. Brunel
Canadian Journal of Microbiology, 1997, 43 (9), pp.854-861
Journal articles hal-02692543v1

Sinorhizobium medicae sp. nov., isolated from annual Medicago spp.

Sophie Rome , M.P. Fernandez , B. Brunel , Philippe Normand , J.C. Cleyet-Marel
International Journal of Systematic Bacteriology, 1996, 46 (4), pp.972-980. ⟨10.1099/00207713-46-4-972⟩
Journal articles hal-02696624v1

Importance des composés phénoliques dans les interactions entre plantes et microorganismes : exemple des relations Rhizobium/légumineuses

Jean Claude Cleyet Marel , Sophie Rome , X. Salducci , J. Wery
Acta Botanica Gallica, 1996, 143 (6), pp.521-529
Journal articles hal-02689682v1

Evidence that two genomic species of Rhizobium are associated with Medicago truncatula

Sophie Rome , B. Brunel , Philippe Normand , M. Fernandez , Jean Claude Cleyet Marel
Archives of Microbiology, 1996, 165 (4), pp.285-288. ⟨10.1007/s002030050328⟩
Journal articles hal-02698249v1

Comparison of nucleotide diversity and symbiotic properties of Rhizobium meliloti populations from annual Medicago species

B. Brunel , Sophie Rome , R. Ziani , Jean Claude Cleyet Marel
FEMS Microbiology Ecology, 1996, 19, pp.71-82
Journal articles hal-02685969v1

Age-dependent transcriptomic changes in the rat heart. Implications for cardiac arrhythmogenesis

Alina Scridon , E. Meugnier , Emmanuelle Loizon , Sophie Rome , Claude Julien
ESC Congress 2014, Jul 2014, Barcelone, Spain. Cardiovascular Research, 103, 2014, Third Congress of the ESC-Council-on-Basic-Cardiovascular-Science, Frontiers in Cardio Vascular Biology 2014, Barcelona. ⟨10.1093/cvr/cvu098.10⟩
Conference poster hal-02740041v1

Resolving transcription network from microarray data with constraint-based formal concept mining

Jérémy Besson , Emmanuelle Meugnier , Jean-François Boulicaut , Etienne Lefai , Hubert Vidal
Ouvertes Biologie Informatique Mathématiques, JOBIM'05, Jul 2005, Lyon, France. pp.1-2, 2005
Conference poster hal-01614548v1

L'analyse du transcriptome de muscles au cours d'un clamp hyperinsulinémique révèle une profonde altération de la régulation transcriptionelle chez les patients diabétiques de type 2

E. Meugnier , Sophie Rome , Jérémy Besson , R. Rabasa-Lhoret , V. Pelloux
Réunion Scientifique de l'ALFEDIAM et ALFEDIAM paramédical, Mar 2005, Lyon, France. 2005
Conference poster hal-01584233v1

Using pattern discovery techniques in computational biology to discover new putative transcription factor binding sites in the promoter sequences of insulin-regulated genes

Ieva Mitasiunaite , Jérémy Besson , Emmanuelle Meugnier , Jean-François Boulicaut , Hubert Vidal
Integrative Post-Genomics, IPG'05, Dec 2005, Lyon, France. 2005
Conference poster hal-01614639v1

L'analyse du transcriptome de muscles de patients obèses et diabétiques de type 2 révèle une profonde altération transcriptionnelle en situation d'insulino-résistance au cours d'un clamp hyperinsulinémique

E. Meugnier , Sophie Rome , Jérémy Besson , R. Rabasa-Lhoret , V. Pelloux
AFERO, Nov 2004, Nancy, France. 2004
Conference poster hal-01585537v1

Mise en évidence d'une profonde altération de l'expression de gènes en réponse à l'insuline dans le muscle de patients diabétiques de type II. Screening à large echelle en utilisant des puces à ADNpangénomique

E. Meugnier , Sophie Rome , Jérémy Besson , R. Rabasa-Lhoret , J.-P. Riou
Réunion Scientifique de l'ALFEDIAM et ALFEDIAM paramédical, Mar 2004, Nice, France. 2004
Conference poster hal-01584209v1

Expression Profiling in Muscle of Type 2 Diabetic Patients during hyperinsulinemia provides new tracks to decipher the molecular defects of insuline resistance in human skeletal muscle

E. Meugnier , Sophie Rome , Jérémy Besson , R. Rabasa-Lhoret , J.-P. Riou
Integrative Post-Genomics, IPG'04, Oct 2004, Lyon, France. 2004
Conference poster hal-01584195v1

Extraction of relevant transcription modules using pattern discovery

Jérémy Besson , Céline Robardet , E. Meugnier , Sophie Rome , Jean-François Boulicaut
Integrative Post-Genomics, IPG'04, Oct 2004, Lyon, France. 2004
Conference poster hal-01614796v1

Sinorhizobia efficient with M Laciniata constitute a novel biovar (BV Laciniata) of S. Meliloti

B. Brunel , M. del Carmen Villegas , Sophie Rome , Lucette Mauré , Odile Domergue
4. European nitrogen fixation conference, Sep 2000, Seville, Spain. 1 p., 2000
Conference poster hal-02839359v1

Characterization of the glutamate transporter gene from human placenta

Sophie Rome , H.C. Mertani , P.E. Lobie , D. Tome , K.O. Lee
80. Annual meeting of the Endocrine Society (Endo'98), Jun 1998, Nouvelle-Orléans, United States. 1 p., 1998
Conference poster hal-02834878v1

Solutions pour le calcul d'ensembles fréquents dans des données biopuces

Jérémy Besson , François Rioult , Bruno Crémilleux , Sophie Rome , Jean-François Boulicaut
Informatique pour l'analyse du transcriptome, Hermès, pp.231-254, 2004, Traité IC2 : information-commande-communication, 2-7462-0850-4
Book sections hal-00324818v1
Image document

Les données d’expression

Nancie Reymond , Hubert Charles , Sophie Rome , Jacques Marti
Informatique pour l’analyse du transcriptome, Hermes Science Publications, pp.45-65, 2004, 2-7462-0850-4
Book sections hal-03506005v1

PITX2 and atrial fibrillation: from palpitations to methylation

R. Donate Puertas , Sophie Rome , E. Morel , J. Claude , Philippe Chevalier
Congress of the European-Society-of-Cardiology (ESC), European Society of Cardiology., Aug 2015, Londres, United Kingdom
Conference papers hal-02741227v1

Recent (1960-2012) and future (2021-2050) major temperature variations in middle mountain areas: comparison between Vercors (Rhône-Alpes, France) and Gaspe Peninsula (Quebec, Canada)

S. Bigot , G. Fortin , F. Raymond , S. Rome , Dominique Dumas
Canadian Association of Geographers (CAG), Session 07: Time-series analysis, variability and trends, 2013, Saint John's, Canada
Conference papers halshs-01281659v1

Robust gene selection from microarray data with a novel Markov boundary learning method : Application to diabetes analysis

Alexandre Aussem , Sergio Rodrigues de Morais , Florence Perraud , Sophie Rome
European Conference on Symbolic and Quantitative Approaches to Reasoning with Uncertainty ECSQARU'09, 2009, Verona, Italy. pp.724-735
Conference papers hal-00383810v1


Jean-François Boulicaut , Federica Calevro , H. Charles , J.M. Fayard , G. Febvay
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Conference papers hal-00391255v1

Faisabilité des extractions d'ensembles fréquents dans des données biopuces : éléments de solution

J.-F. Boulicaut , François Rioult , J. Besson , Bruno Crémilleux , S. Rome
Journées post-génomiques de la Doua (JPGD'03), 2003, France
Conference papers hal-00324828v1

Recherche de groupes de gènes intéressants dans des données d'expression: apport des ensembles fréquents

Olivier Gandrillon , Jean-François Boulicaut , Céline Robardet , Sylvain Blachon , Jérémy Besson
Atelier Fouille de données biopuces à EGC 2003, Lyon, 22 janvier 2003, Jan 2003, lyon, France
Conference papers hal-01535497v1

Structure bactérienne clonale ou panmictique des populations de Sinorhizobium meliloti, symbiote des luzernes ?

B. Brunel , Sophie Rome , Lucette Mauré , T. Elali , Jean Claude Cleyet Marel
Symposium Biodiversité et fonctionnement des ecosystèmes, Jun 1996, Paris, France
Conference papers hal-02771670v1

Rapid identification of the two species of Sinorhizobium which nodulate Medicago using two oligonucleotide probes complementary to 16S rRNA genes

Sophie Rome , B. Brunel , L.A. Materon , Philippe Normand , Jean Claude Cleyet Marel
11. Australian nitrogen fixation conference, Sep 1996, Australia
Conference papers hal-02764790v1

Diversité des souches de Rhizobium associées au genre Medicago

B. Brunel , Sophie Rome , Lucette Mauré , Jean Claude Cleyet Marel
2. Rencontres de phytobactériologie, Feb 1996, Aussois, France
Conference papers hal-02771147v1