Stefano Marzi

Documents

Publications

	RlmQ: a newly discovered rRNA modification enzyme bridging RNA modification and virulence traits in Staphylococcus aureus Roberto Alexander Bahena Ceron , Chloé Teixeira , José Refugio Jaramillo Ponce , Philippe Wolff , Florence Couzon RNA, 2023, 30 (9), pp.200-212. ⟨10.1261/rna.079850.123⟩ Journal articles hal-04673205v1
	Escherichia coli CspA stimulates translation in the cold of its own mRNA by promoting ribosome progression Anna Maria Giuliodori , Riccardo Belardinelli , Melodie Duval , Raffaella Garofalo , Emma Schenckbecher Frontiers in Microbiology, 2023, 14, pp.1118329. ⟨10.3389/fmicb.2023.1118329⟩ Journal articles hal-04220473v1
	Editorial: Interview with the translational apparatus: stories of intriguing circuits and mechanisms to regulate translation in bacteria, volume II Anna Maria Giuliodori , Paola Londei , Stefano Marzi Frontiers in Microbiology, 2023, 14, pp.1195257. ⟨10.3389/fmicb.2023.1195257⟩ Journal articles hal-04220491v1
	Staphylococcus aureus 30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis Margarita Belinite , Iskander Khusainov , Stefano Marzi Bio-protocol , 2022, 12 (20), ⟨10.21769/bioprotoc.4532⟩ Journal articles hal-03845593v1
	The 3′UTR‐derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose‐6‐phosphate uptake in Staphylococcus aureus Emma Desgranges , Laura Barrientos , Lucas Herrgott , Stefano Marzi , Alejandro Toledo-Arana Molecular Microbiology, 2022, 117 (1), pp.193-214. ⟨10.1111/mmi.14845⟩ Journal articles hal-03836042v1
	Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Anna Maria Giuliodori , Stefano Marzi Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.707354⟩ Journal articles hal-03328058v1
	Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus Margarita Belinite , Iskander Khusainov , Heddy Soufari , Stefano Marzi , Pascale Romby Frontiers in Molecular Biosciences, 2021, 8, pp.738752. ⟨10.3389/fmolb.2021.738752⟩ Journal articles hal-03840107v1
	RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Laura Antoine , Roberto Alexander Bahena Ceron , Heemee Devi Bunwaree , Martin Gobry , Victor Loegler Genes, 2021, 12 (8), pp.1125. ⟨10.3390/genes12081125⟩ Journal articles hal-03351100v1
	Escherichia coli ribosomal protein S1 enhances the kinetics of ribosome biogenesis and RNA decay Mélodie Duval , Karine Prévost , Katarzyna Bandyra , Anne Catherine Helfer , Alexey Korepanov International Journal of Molecular Sciences, 2021, 22 (6), pp.2814. ⟨10.1101/2021.10.20.465233⟩ Journal articles hal-04587884v1
	Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs Emma Desgranges , Isabelle Caldelari Baumberger , Stefano Marzi , David Lalaouna Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2020, 1863 (3), pp.194506. ⟨10.1016/j.bbagrm.2020.194506⟩ Journal articles hal-02491311v1
	A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells Farah Bouhedda , Kyong Tkhe Fam , Mayeul Collot , Alexis Autour , Stefano Marzi Nature Chemical Biology, 2019, ⟨10.1038/s41589-019-0381-8⟩ Journal articles hal-02361104v1
	A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus Delphine Bronesky , Emma Desgranges , Anna Corvaglia , Patrice Francois , Carlos Caballero EMBO Journal, 2019, 38 (6), pp.e99363. ⟨10.15252/embj.201899363⟩ Journal articles hal-02112136v1
	RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation David Lalaouna , Jessica Baude , Zongfu Wu , Arnaud Tomasini , Johana Chicher Nucleic Acids Research, 2019, 47 (18), pp.9871-9887. ⟨10.1093/nar/gkz728⟩ Journal articles hal-02294896v1
	The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs Jens Georg , David Lalaouna , Shengwei Hou , Steffen Lott , Isabelle Caldelari Molecular Microbiology, 2019, 113, pp.603 - 612. ⟨10.1111/mmi.14420⟩ Journal articles hal-02429851v1
	Noncoding RNA E. Desgranges , S. Marzi , K. Moreau , P. Romby , Isabelle Caldelari Microbiology Spectrum, 2019, 7 (2), ⟨10.1128/microbiolspec.GPP3-0038-2018⟩ Journal articles hal-02112074v1
	Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS Laura Antoine , Philippe Wolff , Eric Westhof , Pascale Romby , Stefano Marzi Biochimie, 2019, 164, pp.60-69. ⟨10.1016/j.biochi.2019.07.003⟩ Journal articles hal-02294863v1
	RsaI, un ARN régulateur aux multiples facettes, module le métabolisme du pathogène opportuniste Staphylococcus aureus Emma Desgranges , Delphine Bronesky , Anna Corvaglia , Patrice Francois , Carlos Caballero Médecine/Sciences, 2019, 35 (12), pp.1221-1223. ⟨10.1051/medsci/2019235⟩ Journal articles hal-02462897v1
	Structure of the 70S ribosome from human pathogen Staphylococcus aureus Iskander Khusainov , Quentin Vicens , Anthony Bochler , François Grosse , Alexander G. Myasnikov Nucleic Acids Research, 2017, 45 (2), pp.1026-1026. ⟨10.1093/nar/gkw1126⟩ Journal articles hal-02171293v1
	Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001 Isabelle Caldelari , Béatrice Chane-Woon-Ming , Celine Noirot , Karen Moreau , Pascale Romby Genome Announcements, 2017, 5 (32), ⟨10.1128/genomeA.00783-17⟩ Journal articles hal-01608416v1
	Site-Directed Chemical Probing to map transient RNA/protein interactions Mélodie Duval , Alessandra Marenna , Clément Chevalier , Stefano Marzi Methods, 2017, 117, pp.48-58. ⟨10.1016/j.ymeth.2016.12.011⟩ Journal articles hal-02171300v1
	The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms Arnaud Tomasini , Karen Moreau , Johana Chicher , Thomas Geissmann , François Vandenesch Nucleic Acids Research, 2017, 45 (11), pp.6746-6760. ⟨10.1093/nar/gkx219⟩ Journal articles hal-01911302v1
	Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression Delphine Bronesky , Zongfu Wu , Stefano Marzi , Philippe Walter , Thomas Geissmann Annual Review of Microbiology, 2016, 70, pp.299-316. ⟨10.1146/annurev-micro-102215-095708⟩ Journal articles hal-01911209v1
	Structure of the 70S ribosome from human pathogen Staphylococcus aureus. Array Iskander Khusainov , Quentin Vicens , Anthony Bochler , François Grosse , Alexander Myasnikov Nucleic Acids Research, 2016, 44 (21), pp.10491-10504. ⟨10.1093/nar/gkw933⟩ Journal articles hal-03686895v1
	Nucleolin Promotes Heat Shock-Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis F. Morfoisse , F. Tatin , F. Hantelys , A. Adoue , A.-C. Helfer Cancer Research, 2016, 76 (15), pp.4394-4405. ⟨10.1158/0008-5472.CAN-15-3140⟩ Journal articles hal-02294493v1
	Hypoxia induces VEGF-C expression in metastatic tumor cells via a HIF-1α-independent translation-mediated mechanism Florent Morfoisse , Anna Kuchnio , Clément Frainay , Anne Gomez-Brouchet , Marie-Bernadette Delisle Cell Reports, 2014, 6 (1), pp.155-167. ⟨10.1016/j.celrep.2013.12.011⟩ Journal articles hal-02631811v1
	RACK1 controls IRES-mediated translation of viruses Karim Majzoub , Mohamed lamine Hafirassou , Carine Meignin , Akira Goto , Stefano Marzi Cell , 2014, 159 (5), pp.1086-1095. ⟨10.1016/j.cell.2014.10.041⟩ Journal articles hal-02358353v1
	Escherichia coli ribosomal protein S1 unfolds structured mRNAs onto the ribosome for active translation initiation Melodie Duval , Alexey Korepanov , Olivier Fuchsbauer , Pierre Fechter , Andrea Haller PLoS Biology, 2013, 11 (12), pp.e1001731. ⟨10.1371/journal.pbio.1001731⟩ Journal articles hal-00971355v1
	Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor Angelita Simonetti , Stefano Marzi , Isabelle M. L. Billas , Albert Tsai , Attilio Fabbretti Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (39), pp.15656 - 15661. ⟨10.1073/pnas.1309578110⟩ Journal articles hal-02645085v1
	The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Anna Maria Giuliodori , Fabio Di Pietro , Stefano Marzi , Benoit Masquida , Rolf Wagner Molecular Cell, 2010, 37 (1), pp.21-33. ⟨10.1016/j.molcel.2009.11.033⟩ Journal articles hal-00475727v1
	The role of mRNA structure in translational control in bacteria. Thomas Geissmann , Stefano Marzi , Pascale Romby RNA Biol, 2010, 6 (2), pp.153-60 Journal articles hal-00451226v1
	The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation. Renata Moreno , Stefano Marzi , Pascale Romby , Fernando Rojo Nucleic Acids Research, 2009, 37 (22), pp.7678-90. ⟨10.1093/nar/gkp825⟩ Journal articles hal-00561421v1
	Function and ribosomal localization of aIF6, a translational regulator shared by archaea and eukarya. Dario Benelli , Stefano Marzi , Carmine Mancone , Tonino Alonzi , Anna La Teana Nucleic Acids Research, 2009, 37 (1), pp.256-67. ⟨10.1093/nar/gkn959⟩ Journal articles hal-00477276v1
	Structure-function insights into prokaryotic and eukaryotic translation initiation. Alexander G. Myasnikov , Angelita Simonetti , Stefano Marzi , Bruno P. Klaholz Current Opinion in Structural Biology, 2009, 19 (3), pp.300-9. ⟨10.1016/j.sbi.2009.04.010⟩ Journal articles inserm-00420170v1
	Ribosomal initiation complexes probed by toeprinting and effect of trans-acting translational regulators in bacteria. Pierre Fechter , Clément Chevalier , Gulnara Yusupova , Marat M. Yusupov , Pascale Romby Methods in Molecular Biology, 2009, 540, pp.247-63. ⟨10.1007/978-1-59745-558-9_18⟩ Journal articles hal-00391772v1
	[The atomic structure of the ribosome into the spotlight] Pascale Romby , Stefano Marzi , Eric Westhof Médecine/Sciences, 2009, 25 (11), pp.977-81 Journal articles hal-00484450v1
	A structural view of translation initiation in bacteria. Angelita Simonetti , Stefano Marzi , L. Jenner , Alexander Myasnikov , Pascale Romby Cellular and Molecular Life Sciences, 2009, 66 (3), pp.423-36. ⟨10.1007/s00018-008-8416-4⟩ Journal articles hal-00391779v1
	RNA switches regulate initiation of translation in bacteria. Stefano Marzi , Pierre Fechter , Clément Chevalier , Pascale Romby , Thomas Geissmann Biological Chemistry, 2008, 389 (5), pp.585-98 Journal articles hal-00530325v1
	Structure of the 30S translation initiation complex. Angelita Simonetti , Stefano Marzi , Alexander G Myasnikov , Attilio Fabbretti , Marat M. Yusupov Nature, 2008, 455 (7211), pp.416-20. ⟨10.1038/nature07192⟩ Journal articles hal-00342095v1
	Quand le fil de l’ARN messager s’entortille et bloque sa traduction… Stefano Marzi , Pascale Romby , Bruno P Klaholz Médecine/Sciences, 2007, 23 (10), pp.881-3. ⟨10.1051/medsci/20072310881⟩ Journal articles hal-00187824v1
	Structured mRNAs regulate translation initiation by binding to the platform of the ribosome. Stefano Marzi , Alexander G Myasnikov , Alexander Serganov , Chantal Ehresmann , Pascale Romby Cell, 2007, 130 (6), pp.1019-31. ⟨10.1016/j.cell.2007.07.008⟩ Journal articles hal-00199885v1
	Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome. Alexander G Myasnikov , Stefano Marzi , Angelita Simonetti , Anna Maria Giuliodori , Claudio O Gualerzi Nature Structural and Molecular Biology, 2005, 12 (12), pp.1145-9. ⟨10.1038/nsmb1012⟩ Journal articles hal-00187706v1
	Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome A.G. Myasnikov , S. Marzi , A. Simonetti , A.M. Giuliodori , C.O. Gualerzi Nature Structural and Molecular Biology, 2005, 12, pp.1145-1149 Journal articles hal-00093220v1

	Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes from Rabbit Reticulocyte Lysate Suitable for Structural Studies Javier Rol-Moreno , Lauriane Kuhn , Stefano Marzi , Angelita Simonetti Methods Mol Biol, pp.329-339, 2020, ⟨10.1007/978-1-0716-0278-2_21⟩ Book sections hal-02966098v1
	MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus David Lalaouna , Emma Desgranges , Isabelle Caldelari , Stefano Marzi Methods Enzymology, pp.393-411, 2018 Book sections hal-02119006v1
	Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo Pierre Fechter , Delphine Parmentier , Zongfu Wu , Olivier Fuchsbauer , Pascale Romby RNA Structure Determination pp 83-103, pp.83-103, 2016, ⟨10.1007/978-1-4939-6433-8_7⟩ Book sections hal-02294147v1

Stefano Marzi

Publications

RlmQ: a newly discovered rRNA modification enzyme bridging RNA modification and virulence traits in Staphylococcus aureus

Escherichia coli CspA stimulates translation in the cold of its own mRNA by promoting ribosome progression

Editorial: Interview with the translational apparatus: stories of intriguing circuits and mechanisms to regulate translation in bacteria, volume II

Staphylococcus aureus 30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis

The 3′UTR‐derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose‐6‐phosphate uptake in Staphylococcus aureus

Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence

Escherichia coli ribosomal protein S1 enhances the kinetics of ribosome biogenesis and RNA decay

Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs

A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs

Noncoding RNA

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS

RsaI, un ARN régulateur aux multiples facettes, module le métabolisme du pathogène opportuniste Staphylococcus aureus

Structure of the 70S ribosome from human pathogen Staphylococcus aureus

Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001

Site-Directed Chemical Probing to map transient RNA/protein interactions

The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms

Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression

Structure of the 70S ribosome from human pathogen Staphylococcus aureus. Array

Nucleolin Promotes Heat Shock-Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis

Hypoxia induces VEGF-C expression in metastatic tumor cells via a HIF-1α-independent translation-mediated mechanism

RACK1 controls IRES-mediated translation of viruses

Escherichia coli ribosomal protein S1 unfolds structured mRNAs onto the ribosome for active translation initiation

Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor

The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA.

The role of mRNA structure in translational control in bacteria.

The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation.

Function and ribosomal localization of aIF6, a translational regulator shared by archaea and eukarya.

Structure-function insights into prokaryotic and eukaryotic translation initiation.

Ribosomal initiation complexes probed by toeprinting and effect of trans-acting translational regulators in bacteria.

[The atomic structure of the ribosome into the spotlight]

A structural view of translation initiation in bacteria.

RNA switches regulate initiation of translation in bacteria.

Structure of the 30S translation initiation complex.

Quand le fil de l’ARN messager s’entortille et bloque sa traduction…

Structured mRNAs regulate translation initiation by binding to the platform of the ribosome.

Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome

Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes from Rabbit Reticulocyte Lysate Suitable for Structural Studies

MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus

Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo