Stefano Marzi

Publications

Pré-publication, Document de travail (2)

Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species José Refugio Jaramillo Ponce,Philippe Wolff,Virginie Marchand,Yuri Motorin,Maximilian Kohlet al. 2025 Pré-publication, Document de travail hal-05347323v1
Extended Shine-Dalgarno motifs govern translation initiation in Staphylococcus aureus Maximilian P Kohl,Roberto Bahena-Ceron,Béatrice Chane-Woon-Ming,Maria Kompatscher,Matthias Erlacheret al. 2025 Pré-publication, Document de travail hal-05347241v1

Article dans une revue (47)

Coupling tRNAGly gene redundancy with staphylococcal cell wall integrity, antibiotic susceptibility, and virulence potential Adamantia Kouvela,Jose Jaramillo Ponce,Nikoleta Giarimoglou,Johana Chicher,Stefano Marziet al. Nucleic Acids Research, 2025, 53 (13), ⟨10.1093/nar/gkaf599⟩ Article dans une revue hal-05347252v1
Ribosome profiling methods adapted to the study of RNA-dependent translation regulation in Staphylococcus aureus Maximilian Kohl,Béatrice Chane-Woon-Ming,Roberto Bahena-Ceron,Jose Jaramillo-Ponce,Laura Antoineet al. Methods in Molecular Biology, 2024, Methods in Molecular Biology, 2741, pp.73-100. ⟨10.1007/978-1-0716-3565-0_5⟩ Article dans une revue hal-04781575v1
Editorial: Interview with the translational apparatus: stories of intriguing circuits and mechanisms to regulate translation in bacteria, volume II Anna Maria Giuliodori,Paola Londei,Stefano Marzi Frontiers in Microbiology, 2023, 14, pp.1195257. ⟨10.3389/fmicb.2023.1195257⟩ Article dans une revue hal-04220491v1
RlmQ: a newly discovered rRNA modification enzyme bridging RNA modification and virulence traits in Staphylococcus aureus Roberto Alexander Bahena-Ceron,Chloé Teixeira,José Refugio Jaramillo Ponce,Philippe Wolff,Florence Couzonet al. RNA, 2023, 30 (9), pp.200-212. ⟨10.1261/rna.079850.123⟩ Article dans une revue hal-04673205v1
Escherichia coli CspA stimulates translation in the cold of its own mRNA by promoting ribosome progression Anna Maria Giuliodori,Riccardo Belardinelli,Melodie Duval,Raffaella Garofalo,Emma Schenckbecheret al. Frontiers in Microbiology, 2023, 14, pp.1118329. ⟨10.3389/fmicb.2023.1118329⟩ Article dans une revue hal-04220473v1
The 3′UTR‐derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose‐6‐phosphate uptake in Staphylococcus aureus Emma Desgranges,Laura Barrientos,Lucas Herrgott,Stefano Marzi,Alejandro Toledo-Aranaet al. Molecular Microbiology, 2022, 117 (1), pp.193-214. ⟨10.1111/mmi.14845⟩ Article dans une revue hal-03836042v1
Staphylococcus aureus 30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis Margarita Belinite,Iskander Khusainov,Stefano Marzi Bio-protocol , 2022, 12 (20), ⟨10.21769/bioprotoc.4532⟩ Article dans une revue hal-03845593v1
Escherichia coli ribosomal protein S1 enhances the kinetics of ribosome biogenesis and RNA decay Mélodie Duval,Karine Prévost,Katarzyna Bandyra,Anne Catherine Helfer,Alexey Korepanovet al. International Journal of Molecular Sciences, 2021, 22 (6), pp.2814. ⟨10.1101/2021.10.20.465233⟩ Article dans une revue hal-04587884v1
RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Laura Antoine,Roberto Alexander Bahena Ceron,Heemee Devi Bunwaree,Martin Gobry,Victor Loegleret al. Genes, 2021, 12 (8), pp.1125. ⟨10.3390/genes12081125⟩ Article dans une revue hal-03351100v1
Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus Margarita Belinite,Iskander Khusainov,Heddy Soufari,Stefano Marzi,Pascale Rombyet al. Frontiers in Molecular Biosciences, 2021, 8, pp.738752. ⟨10.3389/fmolb.2021.738752⟩ Article dans une revue hal-03840107v1
Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Anna Maria Giuliodori,Stefano Marzi Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.707354⟩ Article dans une revue hal-03328058v1
Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs Emma Desgranges,Isabelle Caldelari Baumberger,Stefano Marzi,David Lalaouna Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2020, 1863 (3), pp.194506. ⟨10.1016/j.bbagrm.2020.194506⟩ Article dans une revue hal-02491311v1
The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs Jens Georg,David Lalaouna,Shengwei Hou,Steffen Lott,Isabelle Caldelariet al. Molecular Microbiology, 2019, 113, pp.603 - 612. ⟨10.1111/mmi.14420⟩ Article dans une revue hal-02429851v1
A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus Delphine Bronesky,Emma Desgranges,Emma Desgranges,Anna Corvaglia,Patrice Francoiset al. EMBO Journal, 2019, 38 (6), pp.e99363. ⟨10.15252/embj.201899363⟩ Article dans une revue hal-02112136v1
RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation David Lalaouna,Jessica Baude,Zongfu Wu,Arnaud Tomasini,Johana Chicheret al. Nucleic Acids Research, 2019, 47 (18), pp.9871-9887. ⟨10.1093/nar/gkz728⟩ Article dans une revue hal-02294896v1
RsaI, un ARN régulateur aux multiples facettes, module le métabolisme du pathogène opportuniste Staphylococcus aureus Emma Desgranges,Delphine Bronesky,Anna Corvaglia,Patrice Francois,Carlos Caballeroet al. Médecine/Sciences, 2019, 35 (12), pp.1221-1223. ⟨10.1051/medsci/2019235⟩ Article dans une revue hal-02462897v1
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS Laura Antoine,Philippe Wolff,Eric Westhof,Pascale Romby,Stefano Marzi Biochimie, 2019, 164, pp.60-69. ⟨10.1016/j.biochi.2019.07.003⟩ Article dans une revue hal-02294863v1
Noncoding RNA E. Desgranges,S. Marzi,K. Moreau,P. Romby,Isabelle Caldelari Microbiology Spectrum, 2019, 7 (2), ⟨10.1128/microbiolspec.GPP3-0038-2018⟩ Article dans une revue hal-02112074v1
A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells Farah Bouhedda,Kyong Tkhe Fam,Mayeul Collot,Alexis Autour,Stefano Marziet al. Nature Chemical Biology, 2019, ⟨10.1038/s41589-019-0381-8⟩ Article dans une revue hal-02361104v1
The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms Arnaud Tomasini,Karen Moreau,Johana Chicher,Thomas Geissmann,François Vandeneschet al. Nucleic Acids Research, 2017, 45 (11), pp.6746-6760. ⟨10.1093/nar/gkx219⟩ Article dans une revue hal-01911302v1
Structure of the 70S ribosome from human pathogen Staphylococcus aureus Iskander Khusainov,Quentin Vicens,Anthony Bochler,François Grosse,Alexander Myasnikovet al. Nucleic Acids Research, 2017, 45 (2), pp.1026-1026. ⟨10.1093/nar/gkw1126⟩ Article dans une revue hal-02171293v1
Site-Directed Chemical Probing to map transient RNA/protein interactions Mélodie Duval,Alessandra Marenna,Clément Chevalier,Stefano Marzi Methods, 2017, 117, pp.48-58. ⟨10.1016/j.ymeth.2016.12.011⟩ Article dans une revue istex hal-02171300v1
Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001 Isabelle Caldelari,Béatrice Chane-Woon-Ming,Celine Noirot,Karen Moreau,Pascale Rombyet al. Genome Announcements, 2017, 5 (32), ⟨10.1128/genomeA.00783-17⟩ Article dans une revue hal-01608416v1
Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression Delphine Bronesky,Zongfu Wu,Stefano Marzi,Philippe Walter,Thomas Geissmannet al. Annual Review of Microbiology, 2016, 70, pp.299-316. ⟨10.1146/annurev-micro-102215-095708⟩ Article dans une revue hal-01911209v1
Nucleolin Promotes Heat Shock-Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis F. Morfoisse,F. Tatin,F. Hantelys,A. Adoue,A.-C. Helferet al. Cancer Research, 2016, 76 (15), pp.4394-4405. ⟨10.1158/0008-5472.CAN-15-3140⟩ Article dans une revue hal-02294493v1
Multiple ways to regulate translation initiation in bacteria: mechanisms, regulatory circuits, dynamics. M Duval,Angelita Simonetti,I Caldelari,Stefano Marzi Biochimie, 2015, 114, pp.18-29. ⟨10.1016/j.biochi.2015.03.007⟩ Article dans une revue istex hal-05258464v1
Hypoxia induces VEGF-C expression in metastatic tumor cells via a HIF-1α-independent translation-mediated mechanism Florent Morfoisse,Anna Kuchnio,Clément Frainay,Anne Gomez-Brouchet,Marie-Bernadette Delisleet al. Cell Reports, 2014, 6 (1), pp.155-167. ⟨10.1016/j.celrep.2013.12.011⟩ Article dans une revue hal-02631811v1
RACK1 controls IRES-mediated translation of viruses Karim Majzoub,Mohamed lamine Hafirassou,Carine Meignin,Akira Goto,Stefano Marziet al. Cell, 2014, 159 (5), pp.1086-1095. ⟨10.1016/j.cell.2014.10.041⟩ Article dans une revue hal-02358353v1
Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor Angelita Simonetti,Stefano Marzi,Isabelle M. L. Billas,Albert Tsai,Attilio Fabbrettiet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (39), pp.15656 - 15661. ⟨10.1073/pnas.1309578110⟩ Article dans une revue hal-02645085v1
Escherichia coli ribosomal protein S1 unfolds structured mRNAs onto the ribosome for active translation initiation Melodie Duval,Alexey Korepanov,Olivier Fuchsbauer,Pierre Fechter,Andrea Halleret al. PLoS Biology, 2013, 11 (12), pp.e1001731. ⟨10.1371/journal.pbio.1001731⟩ Article dans une revue hal-00971355v1
RNA mimicry, a decoy for regulatory proteins. Stefano Marzi,Pascale Romby Molecular Microbiology, 2012, 83 (1), pp.1-6. ⟨10.1111/j.1365-2958.2011.07911.x⟩ Article dans une revue hal-05258474v1
Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III in Staphylococcus aureus. C Romilly,C Chevalier,Stefano Marzi,B Masquida,T Geissmannet al. RNA Biology, 2012, 9 (12), pp.1461-1472. ⟨10.4161/rna.22710⟩ Article dans une revue hal-05259392v1
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Anna Maria Giuliodori,Fabio Di Pietro,Stefano Marzi,Benoit Masquida,Rolf Wagneret al. Molecular Cell, 2010, 37 (1), pp.21-33. ⟨10.1016/j.molcel.2009.11.033⟩ Article dans une revue hal-00475727v1
The role of mRNA structure in translational control in bacteria. Thomas Geissmann,Stefano Marzi,Pascale Romby RNA Biology, 2010, 6 (2), pp.153-60 Article dans une revue hal-00451226v1
Structure-function insights into prokaryotic and eukaryotic translation initiation. Alexander G. Myasnikov,Angelita Simonetti,Stefano Marzi,Bruno P. Klaholz Current Opinion in Structural Biology, 2009, 19 (3), pp.300-9. ⟨10.1016/j.sbi.2009.04.010⟩ Article dans une revue istex inserm-00420170v1
Function and ribosomal localization of aIF6, a translational regulator shared by archaea and eukarya. Dario Benelli,Stefano Marzi,Carmine Mancone,Tonino Alonzi,Anna La Teanaet al. Nucleic Acids Research, 2009, 37 (1), pp.256-67. ⟨10.1093/nar/gkn959⟩ Article dans une revue hal-00477276v1
The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation. Renata Moreno,Stefano Marzi,Pascale Romby,Fernando Rojo Nucleic Acids Research, 2009, 37 (22), pp.7678-90. ⟨10.1093/nar/gkp825⟩ Article dans une revue hal-00561421v1
La structure atomique du ribosome en pleine lumière [= The atomic structure of the ribosome into the spotlight] Pascale Romby,Eric Westhof,Stefano Marzi Médecine/Sciences, 2009, 25 (11), pp.977-981. ⟨10.1051/medsci/20092511977⟩ Article dans une revue hal-05255200v1
Ribosomal initiation complexes probed by toeprinting and effect of trans-acting translational regulators in bacteria. Pierre Fechter,Clément Chevalier,Gulnara Yusupova,Marat M. Yusupov,Pascale Rombyet al. Methods in Molecular Biology, 2009, 540, pp.247-63. ⟨10.1007/978-1-59745-558-9_18⟩ Article dans une revue hal-00391772v1
[The atomic structure of the ribosome into the spotlight] Pascale Romby,Stefano Marzi,Eric Westhof Médecine/Sciences, 2009, 25 (11), pp.977-81 Article dans une revue hal-00484450v1
A structural view of translation initiation in bacteria. Angelita Simonetti,Stefano Marzi,L. Jenner,Alexander Myasnikov,Pascale Rombyet al. Cellular and Molecular Life Sciences, 2009, 66 (3), pp.423-36. ⟨10.1007/s00018-008-8416-4⟩ Article dans une revue hal-00391779v1
Structure of the 30S translation initiation complex. Angelita Simonetti,Stefano Marzi,Alexander G Myasnikov,Attilio Fabbretti,Marat M. Yusupovet al. Nature, 2008, 455 (7211), pp.416-20. ⟨10.1038/nature07192⟩ Article dans une revue istex hal-00342095v1
RNA switches regulate initiation of translation in bacteria. Stefano Marzi,Pierre Fechter,Clément Chevalier,Pascale Romby,Thomas Geissmann Biological Chemistry, 2008, 389 (5), pp.585-98 Article dans une revue hal-00530325v1
Quand le fil de l’ARN messager s’entortille et bloque sa traduction… Stefano Marzi,Pascale Romby,Bruno P Klaholz Médecine/Sciences, 2007, 23 (10), pp.881-3. ⟨10.1051/medsci/20072310881⟩ Article dans une revue hal-00187824v1
Structured mRNAs regulate translation initiation by binding to the platform of the ribosome. Stefano Marzi,Alexander G Myasnikov,Alexander Serganov,Chantal Ehresmann,Pascale Rombyet al. Cell, 2007, 130 (6), pp.1019-31. ⟨10.1016/j.cell.2007.07.008⟩ Article dans une revue hal-00199885v1
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome A.G. Myasnikov,S. Marzi,A. Simonetti,A.M. Giuliodori,C.O. Gualerzi Nature Structural and Molecular Biology, 2005, 12, pp.1145-1149 Article dans une revue hal-00093220v1
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome. Alexander G Myasnikov,Stefano Marzi,Angelita Simonetti,Anna Maria Giuliodori,Claudio O Gualerziet al. Nature Structural and Molecular Biology, 2005, 12 (12), pp.1145-9. ⟨10.1038/nsmb1012⟩ Article dans une revue istex hal-00187706v1

Chapitre d'ouvrage (7)

Methods to analyze post-transcriptional modifications applied to stable RNAs in &lt;i&gt;Staphylococcus aureus&lt;/i&gt; Roberto Alexander Bahena Ceron,José Jaramillo-Ponce,Hiroki Kanazawa,Laura Antoine,Philippe Wolffet al. Jan Barciszewski. RNA Structure and Function, 14, Springer International Publishing, pp.233-258, 2023, RNA Technologies, 978-3-031-36390-0. ⟨10.1007/978-3-031-36390-0_11⟩ Chapitre d'ouvrage hal-04781623v1
Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes from Rabbit Reticulocyte Lysate Suitable for Structural Studies Javier Rol-Moreno,Lauriane Kuhn,Stefano Marzi,Angelita Simonetti Methods Mol Biol, pp.329-339, 2020, ⟨10.1007/978-1-0716-0278-2_21⟩ Chapitre d'ouvrage hal-02966098v1
MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus David Lalaouna,Emma Desgranges,Isabelle Caldelari,Stefano Marzi Methods Enzymology, pp.393-411, 2018, ⟨10.1016/bs.mie.2018.08.022⟩ Chapitre d'ouvrage hal-02119006v1
Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo Pierre Fechter,Delphine Parmentier,Zongfu Wu,Olivier Fuchsbauer,Pascale Rombyet al. RNA Structure Determination pp 83-103, pp.83-103, 2016, ⟨10.1007/978-1-4939-6433-8_7⟩ Chapitre d'ouvrage hal-02294147v1
Probing RNA Structure In Vitro with Enzymes and Chemicals. Anne-Catherine Helfer,Cédric Romilly,Clément Chevalier,Efthimia Lioliou,Stefano Marziet al. R Hartmann; K Bindereif; A Schön; A Westhof. Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, Wiley-VCH, pp.205-230, 2014, 9783527647064. ⟨10.1002/9783527647064.ch10⟩ Chapitre d'ouvrage hal-05277546v1
Footprinting methods for mapping RNA-protein and RNA-RNA interactions. M Duval,C Romilly,Anne-Catherine Helfer,O Fuchsbauer,Pascale Rombyet al. D Klostermeier; C Hammann. RNA Structure and Folding, Verlag Walter de Gruyter, pp.29-50, 2013, 9783110284959. ⟨10.1515/9783110284959⟩ Chapitre d'ouvrage hal-05277549v1
Insights into translation initiation and termination complexes and into the polysome architecture Angelita Simonetti,Stefano Marzi,Alexander Myasnikov,Jean-François Ménétret,Bruno P. Klaholz Ribosomes, Springer Vienna, pp.113-128, 2011, ⟨10.1007/978-3-7091-0215-2_10⟩ Chapitre d'ouvrage hal-04996133v1