Stéphane CHAILLOU

Présentation

Publications

Article dans une revue (60)

Microbiome metabolic modeling as a tool for innovation in fermented foods Elham Karimi,Julien Tap,Marie-Christine Champomier-Vergès,Stéphane Chaillou Current Opinion in Food Science, 2026, 67, pp.101368. ⟨10.1016/j.cofs.2025.101368⟩ Article dans une revue hal-05530180v1
Exploring viral diversity in fermented vegetables through viral metagenomics Julia Cantuti Gendre,Claire Le Marrec,Stéphane Chaillou,Lysiane Omhover-Fougy,Sophie Landaudet al. Food Microbiology, 2025, 128, pp.104733. ⟨10.1016/j.fm.2025.104733⟩ Article dans une revue hal-04915669v1
Integration of metataxonomic data sets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables Romane Junker,Florence Valence,Michel-Yves Mistou,Stéphane Chaillou,Helene Chiapello Microbiology Spectrum, 2024, 12 (6), pp.e00312-24. ⟨10.1128/spectrum.00312-24⟩ Article dans une revue hal-04581000v1
Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios Simon Poirier,Gwendoline Coeuret,Marie-Christine Champomier-Vergès,Marie-Hélène Desmonts,Dalal Werneret al. Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩ Article dans une revue hal-04282392v1
Combination of High-Pressure Treatment at 500 MPa and Biopreservation with a Lactococcus lactis Strain for Lowering the Bacterial Growth during Storage of Diced Cooked Ham with Reduced Nitrite Salt Stéphane Chaillou,Mihanta Ramaroson,Gwendoline Coeuret,Albert Rossero,Valérie Anthoineet al. Microorganisms, 2022, 10 (2), pp.1-14. ⟨10.3390/microorganisms10020456⟩ Article dans une revue hal-03798971v1
Metagenetic characterization of bacterial communities associated with ready-to-eat leafy vegetables and study of temperature effect on their composition during storage Evanthia Manthou,Gwendoline Coeuret,Stephane Chaillou,George-John Nychas Food Research International, 2022, 158, pp.111563. ⟨10.1016/j.foodres.2022.111563⟩ Article dans une revue hal-04106534v1
Discrimination of spoiled beef and salmon stored under different atmospheres by an optoelectronic nose. Comparison with GC-MS measurements Pauline Claus,Thomas Cattenoz,Sophie Landaud,Stéphane Chaillou,Anne-Claire Peronet al. Future Foods, 2022, 5, pp.100106. ⟨10.1016/j.fufo.2021.100106⟩ Article dans une revue hal-03708769v1
Evolution of fungal community associated with ready-to-eat pineapple during storage under different temperature conditions Evanthia Manthou,Gwendoline Coeuret,Stephane Chaillou,George-John Nychas Food Microbiology, 2021, 97, pp.103736. ⟨10.1016/j.fm.2021.103736⟩ Article dans une revue hal-03376485v1
Application of a path-modelling approach for deciphering causality relationships between microbiota, volatile organic compounds and off-odour profiles during meat spoilage Ngoc-Du Martin Luong,Jeanne-Marie Membré,Louis Coroller,Monique Zagorec,Simon Poirieret al. International Journal of Food Microbiology, 2021, 348, pp.109208. ⟨10.1016/j.ijfoodmicro.2021.109208⟩ Article dans une revue hal-03210645v1
Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705 Lucrecia Terán,Sergio A. Cuozzo,María C. Aristimuño Ficoseco,Silvina Fadda,Stephane Chaillouet al. PLoS ONE, 2020, 15 (4), ⟨10.1371/journal.pone.0230857⟩ Article dans une revue hal-02921909v1
Large microbiota survey reveals how the microbial ecology of cooked ham is shaped by different processing steps Marine Zagdoun,Gwendoline Coeuret,Méry N'Dione,Marie-Christine Champomier-Verges,Stephane Chaillou Food Microbiology, 2020, 91, ⟨10.1016/j.fm.2020.103547⟩ Article dans une revue hal-02921899v1
Heme Uptake in Lactobacillus sakei Evidenced by a New Energy Coupling Factor (ECF)-Like Transport System Emilie Verplaetse,Gwenaëlle André-Leroux,Philippe Duhutrel,Gwendoline Coeuret,Stéphane Chaillouet al. Applied and Environmental Microbiology, 2020, 86 (18), pp.1-41. ⟨10.1128/AEM.02847-19⟩ Article dans une revue hal-02939244v1
Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere Simon Poirier,Ngoc-Du Martin Luong,Valérie Anthoine,Sandrine Guillou,Jeanne-Marie Membréet al. Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩ Article dans une revue (data paper) hal-02914971v1
Utilisation des microbiotes comme modèles Monique Zagorec,Marie Champomier-Vergès,Stéphane Chaillou Viandes et Produits Carnés, 2020 Article dans une revue hal-02960423v1
Biopréservation et hautes pressions : effet sur les communautés microbiennes Monique Zagorec,Marie Champomier-Vergès,Sandrine Guillou,Stéphane Chaillou Viandes et Produits Carnés, 2020, pp.1-5 Article dans une revue hal-02960426v1
Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles Eric Dugat-Bony,Julien Lossouarn,Marianne de Paepe,Anne-Sophie Sarthou,Yasmina Fedalaet al. Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩ Article dans une revue hal-02623156v1
Biopréservation et hautes pressions: des outils pour la maîtrise des dangers microbiologiques dans les aliments. Hélène Simonin,Stephane André,Stephane Chaillou,Marie-Christine Champomier-Verges,Carole Feureret al. Industries Alimentaires et Agricoles, 2019, 61, pp.34-38 Article dans une revue hal-02618848v1
Complete and Draft Genome Sequences of Nine&lt;em&gt; Lactobacillus&lt;/em&gt; &lt;em&gt;sakei&lt;/em&gt; Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes Valentin Loux,Gwendoline Coeuret,Monique Zagorec,Marie-Christine Champomier-Verges,Stephane Chaillou Genome Announcements, 2018, 6 (16), 3 p. ⟨10.1128/genomeA.00082-18⟩ Article dans une revue hal-02619093v1
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing Simon Poirier,Olivier Rué,Raphaelle Peguilhan,Gwendoline Coeuret,Monique Zagorecet al. PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩ Article dans une revue hal-02621350v1
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products Simon Poirier,Olivier Rué,Gwendoline Coeuret,Marie-Christine Champomier-Verges,Valentin Louxet al. BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩ Article dans une revue hal-02048857v1
Phylogenomic Analysis of Lactobacillus curvatus Reveals Two Lineages Distinguished by Genes for Fermenting Plan-Derived Carbohydrates Lucrecia C. Terán,Gwendoline Coeuret,Raul Raya,Monique Zagorec,Marie-Christine Champomier-Vergeset al. Genome Biology and Evolution, 2018, 10 (6), pp.1516 - 1525. ⟨10.1093/gbe/evy106⟩ Article dans une revue hal-02621739v1
Draft genome sequences of nine strains of brochothrix thermosphacta, carnobacterium divergens, lactobacillus algidus, lactobacillus fuchuensis, lactococcus piscium, leuconostoc gelidum subsp. gasicomitatum, pseudomonas lundensis, and weissella viridescens, a collection of psychrotrophic species involved in meat and seafood spoilage Simon Poirier,Gwendoline Coeuret,Marie-Christine Champomier-Verges,Stephane Chaillou Microbiology Resource Announcements, 2018, 6 (24), pp.1-3. ⟨10.1128/genomeA.00479-18⟩ Article dans une revue hal-02618139v1
Draft Genome sequence of &lt;em&gt;Lactobacillus curvatus&lt;/em&gt; FLEC03, a meat-borne isolate from beef carpaccio packaged in a modified atmosphere Lucrecia C. Terán,Gwendoline Coeuret,Raul Raya,Marie-Christine Champomier-Verges,Stephane Chaillou Genome Announcements, 2017, 5 (26), ⟨10.1128/genomeA.00584-17⟩ Article dans une revue hal-02617680v1
Draft genome sequence of &lt;em&gt;Serratia proteamaculans&lt;/em&gt; MFPA44A14-05, a model organism for the study of meat and seafood spoilage Lysiane Fougy,Gwendoline Coeuret,Marie-Christine Champomier-Verges,Stephane Chaillou Genome Announcements, 2017, 5 (23), ⟨10.1128/genomeA.00491-17⟩ Article dans une revue hal-02622529v1
Reducing salt in raw pork sausages increases spoilage and correlates with reduced bacterial diversity Lysiane Fougy,Marie-Hélène Desmonts,Gwendoline Coeuret,Christine Fassel,Erwann Hamonet al. Applied and Environmental Microbiology, 2016, 82 (13), pp.3928-3939. ⟨10.1128/AEM.00323-16⟩ Article dans une revue hal-02636148v1
Perspectives in Mathematical Modelling for Microbial Ecology Matthew J. Wade,Jérôme Harmand,Boumediene Benyahia,Théodore Bouchez,Stephane Chaillouet al. Ecological Modelling, 2016, 321 (64-74), pp.64-74. ⟨10.1016/j.ecolmodel.2015.11.002⟩ Article dans une revue (article de synthèse) hal-01227423v1
Selection of bioprotective cultures for preventing cold-smoked salmon spoilage Françoise Leroi,Josiane Cornet,Frédérique Chevalier,Mireille Cardinal,Gwendoline Coeuretet al. International Journal of Food Microbiology, 2015, 213, pp.79-87. ⟨10.1016/j.ijfoodmicro.2015.05.005⟩ Article dans une revue hal-01536518v1
La connaissance approfondie des communautés bactériennes des aliments et ses conséquences pour l’utilisation de la biopréservation Monique M. Zagorec,Marie-Christine Champomier Verges,Stéphane Chaillou,Sabine Leroy,S. Christieans Innovations Agronomiques, 2015, 44, pp.15-24. ⟨10.15454/1.462262826089343E12⟩ Article dans une revue hal-02641750v1
Phenotypic and genotypic characterization of peptidoglycan hydrolases of [i]Lactobacillus sakei[/i] Afef Najjari,Houda Amairi,Stephane Chaillou,Diego Mora,Abdellatif Boudabouset al. Journal of Advanced Research, 2015, 7 (1), ⟨10.1016/j.jare.2015.04.004⟩ Article dans une revue hal-01204469v1
A polyphasic approach to study the dynamics of microbial population of an organic wheat sourdough during its conversion to gluten-free sourdough Emilie Lhomme,Sandra Mezaire,Maren Bonnand Ducasse,Hubert Chiron,Marie-Christine Champomier-Vergeset al. International Microbiology, 2014, 17 (1), pp.1-9. ⟨10.2436/20.1501.01.202⟩ Article dans une revue hal-01190027v1
Quantification and efficiency of Lactobacillus sakei strain mixtures used as protective cultures in ground beef Stephane Chaillou,S Christieans,M Rivollier,Isabelle Lucquin,Marie-Christine Champomier-Vergeset al. Meat Science, 2014, 97 (3), pp.332-338. ⟨10.1016/j.meatsci.2013.08.009⟩ Article dans une revue istex hal-01053883v1
High genetic diversity among strains of the unindustrialized lactic acid bacterium carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing Abdur Rahman,Catherine Cailliez-Grimal,Cyril Bontemps,Sophie Payot,Stephane Chaillouet al. Applied and Environmental Microbiology, 2014, 80 (13), pp.3920-3929. ⟨10.1128/AEM.00681-14⟩ Article dans une revue hal-01190026v1
Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage Stephane Chaillou,Aurélie Chaulot-Talmon,Hélène Caekebeke,Mireille Cardinal,Souad Christieanset al. The International Society of Microbiologial Ecology Journal, 2014, 9 (5), pp.1105-1118. ⟨10.1038/ismej.2014.202⟩ Article dans une revue hal-01204375v1
Catabolism of N -Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins Jamila Anba-Mondoloni,Stephane Chaillou,Monique Zagorec,Marie-Christine M.-C. Champomier-Verges Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩ Article dans une revue hal-04310418v1
Population genetics of [i]Lactobacillus sakei[/i] reveals three lineages with distinct evolutionary histories Stephane Chaillou,Isabelle Lucquin,Afef Najjari,Monique Zagorec,Marie-Christine Champomier-Verges PLoS ONE, 2013, 8 (9), ⟨10.1371/journal.pone.0073253⟩ Article dans une revue hal-01189719v1
Catabolism of N-Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins Jamila Anba-Mondoloni,Stephane Chaillou,Monique Zagorec,Marie-Christine Champomier-Verges Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩ Article dans une revue hal-01003325v1
Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28. Catherine C. Cailliez-Grimal,Stéphane Chaillou,Jamila J. Anba-Mondoloni,Valentin Loux,Muhammad Inam M. I. Afzalet al. Genome Announcements, 2013, 1 (1), pp.1-2. ⟨10.1128/genomeA.00115-12⟩ Article dans une revue hal-00939584v1
Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges Morgan Guilbaud,Monique Zagorec,Stephane Chaillou,Marie-Christine Champomier-Verges Food Microbiology, 2012, 29 (2), pp.197 - 204. ⟨10.1016/j.fm.2011.07.011⟩ Article dans une revue istex hal-01003446v1
Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes Isabelle Lucquin,Monique Zagorec,Marie-Christine Champomier-Verges,Stephane Chaillou Food Microbiology, 2012, 29 (2), pp.187 - 196. ⟨10.1016/j.fm.2011.08.001⟩ Article dans une revue istex hal-01003445v1
Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei Stephane Chaillou,Marie Daty,Fabienne F. Baraige,Anne Marie Dudez,Patricia Angladeet al. Applied and Environmental Microbiology, 2009, 75 (4), pp.970-980. ⟨10.1128/AEM.01721-08⟩ Article dans une revue hal-01190024v1
Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice Fabrizio Chiaramonte,Sebastien Blugeon,Stephane Chaillou,Philippe Langella,Monique Zagorec Applied and Environmental Microbiology, 2009, 75 (13), pp.4498-4505. ⟨10.1128/AEM.02868-08⟩ Article dans une revue hal-01190025v1
Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth Eric Hüfner,Tobias Markieton,Stéphane Chaillou,Anne-Marie Crutz-Le Coq,Monique Zagorecet al. Applied and Environmental Microbiology, 2007, 73 (8), pp.2522-2531. ⟨10.1128/AEM.02396-06⟩ Article dans une revue hal-02662930v1
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system K. Bryson,Valentin Loux,Robert R. Bossy,P. Nicolas,Stéphane Chaillouet al. Nucleic Acids Research, 2006, 34 (12), pp.3533-3545. ⟨10.1093/nar/gkl471⟩ Article dans une revue hal-02665192v1
Lactobacillus sakei, une bactérie atypique, vieille compagne de l’homme Stéphane Chaillou,Marie-Christine Champomier Verges,Anne-Marie Crutz-Le Coq,Monique Zagorec INRA Mensuel, 2006, 126, pp.24-30 Article dans une revue hal-02656226v1
Du génome de Lactobacillus sakei à la bioconservation des produits carnés Monique Zagorec,Stephane Chaillou,Marie-Christine Champomier-Verges,Anne-Marie Le Coq La revue française de la recherche en viandes et produits carnés, 2006, 25 (3), pp.1-3 Article dans une revue hal-01190029v1
Phenotypic and genotypic identification of lactic acid bacteria isolated from a small-scale facility producing traditional dry sausages Salim Ammor,Cinta Rachman,Stéphane Chaillou,Hervé Prevost,Xavier Doussetet al. Food Microbiology, 2005, 22 (5), pp.387-382. ⟨10.1016/j.fm.2004.11.005⟩ Article dans une revue istex hal-02680364v1
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K Stéphane Chaillou,Marie-Christine Champomier Verges,Monique Cornet,Anne-Marie Crutz-Le Coq,Anne-Marie Dudezet al. Nature Biotechnology, 2005, 23 (12), pp.1527-1533. ⟨10.1038/nbt1160⟩ Article dans une revue hal-02683108v1
Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster Trond Møretrø,Christine Naterstad,Ellen Wang,Inga Aasen,Stéphane Chaillouet al. Research in Microbiology, 2005, 156 (9), pp.949-960. ⟨10.1016/j.resmic.2005.05.005⟩ Article dans une revue istex hal-02678806v1
Characterization and selection of Lactobacillus sakei strains isolated from traditional dry sausage for their potential use as starter cultures Salim Ammor,Eric Dufour,Monique Zagorec,Stéphane Chaillou,Isabelle Chevalier Food Microbiology, 2005, 22 (6), pp.529-538. ⟨10.1016/j.fm.2004.11.016⟩ Article dans une revue istex hal-02682925v1
Evidence for involvement of at least six proteins in adaptation of Lactobacillus sakei to cold temperatures and addition of NaCl Anika Marceau,Monique Zagorec,Stéphane Chaillou,Thérèse Méra,Marie-Christine Champomier Verges Applied and Environmental Microbiology, 2004, 70 (12), pp.7260-7268. ⟨10.1128/AEM.70.12.7260-7268.2004⟩ Article dans une revue hal-02683183v1
Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis Guillaume Meurice,Daniel Jacob,Catherine Deborde,Stéphane Chaillou,Annette Rouaultet al. Le Lait, 2004, 84 (1-2), pp.15-24. ⟨10.1051/lait:2003041⟩ Article dans une revue hal-00895526v1
Physical and genetic map of the Lactobacillus sakei 23K chromosome Anne-Marie Dudez,Stéphane Chaillou,Lionel Hissler,Régis Stentz,Marie-Christine Champomier Vergeset al. Microbiology, 2002, 148 (2), pp.421-431 Article dans une revue hal-02677706v1
Discovering lactic acid bacteria by genomics Todd Klaenhammer,Eric Altermann,Fabrizio Arigoni,Alexandre Bolotine,Fred Breidtet al. Antonie van Leeuwenhoek, 2002, 82 (1-4), pp.29-58 Article dans une revue hal-01190023v1
Lactobacillus sakei: recent developments and future prospects Marie-Christine Champomier Verges,Stéphane Chaillou,M. Cornet,Monique M. Zagorec Research in Microbiology, 2001, 152, pp.839-848 Article dans une revue hal-02669693v1
Contribution of the phosphoenolpyruvate:mannose phosphotransferase system to carbon catabolite repression in Lactobacillus pentosus Stéphane Chaillou,Pieter Postma,Peter Pouwels Microbiology, 2001, 147 (3), pp.671-679. ⟨10.1099/00221287-147-3-671⟩ Article dans une revue hal-03376465v1
Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization? Régis Stentz,Monique Cornet,Stéphane Chaillou,Monique Zagorec Le Lait, 2001, 81 (1-2), pp.131-138. ⟨10.1051/lait:2001117⟩ Article dans une revue hal-00895466v1
Functional Expression in Lactobacillus plantarum of xylP Encoding the Isoprimeverose Transporter of Lactobacillus pentosus Stéphane Chaillou,Pieter Postma,Peter Pouwels Journal of Bacteriology, 1998, 180 (15), pp.4011-4014. ⟨10.1128/JB.180.15.4011-4014.1998⟩ Article dans une revue hal-03376469v1
Molecular Cloning and Functional Expression in Lactobacillus plantarum 80 of xylT , Encoding the d -Xylose–H + Symporter of Lactobacillus brevis Stéphane Chaillou,Yeou-Cherng Bor,Carl Batt,Pieter Postma,Peter Pouwels Applied and Environmental Microbiology, 1998, 64 (12), pp.4720-4728. ⟨10.1128/AEM.64.12.4720-4728.1998⟩ Article dans une revue hal-03376482v1
Cloning, Sequence Analysis, and Characterization of the Genes Involved in Isoprimeverose Metabolism in Lactobacillus pentosus Stéphane Chaillou,B. Christien Lokman,Rob Leer,Clara Posthuma,Pieter Postmaet al. Journal of Bacteriology, 1998, 180 (9), pp.2312-2320. ⟨10.1128/JB.180.9.2312-2320.1998⟩ Article dans une revue hal-03376461v1
Regulation of expression of the Lactobacillus pentosus xylAB operon B Lokman,M Heerikhuisen,R Leer,A van den Broek,Y Borsboomet al. Journal of Bacteriology, 1997, 179 (17), pp.5391-5397. ⟨10.1128/jb.179.17.5391-5397.1997⟩ Article dans une revue hal-03373849v1

Pré-publication, Document de travail (2)

Food Microbiome Metabolic Modules (F3M), a tool suite for functional profiling of food microbiomes Julien Tap,Nacer Mohellibi,Colin Tinsley,Valentin Loux,Stéphane Chaillou 2025 Pré-publication, Document de travail hal-05306516v1
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables Romane Junker,Florence Valence,Michel-Yves Mistou,Stéphane Chaillou,Helene Chiapello 2023 Pré-publication, Document de travail hal-04286431v1