Stéphane Nicolas

Identifiants chercheurs

IdHAL :

stephane-nicolas

ORCID :

0000-0003-0758-9930

IdRef :

119618737

ResearcherID :

http://www.researcherid.com/rid/D-4980-2009

Publications

Article dans une revue (36)

High-quality chromosome-scale genome assemblies of 29 maize inbred lines of European breeding relevance Camille Marcuzzo,Clément Birbes,Camille Eché,Arnaud Di Franco,Thomas Farautet al. Scientific Data , 2026, Online ahead of print. ⟨10.1038/s41597-026-07055-z⟩ Article dans une revue (data paper) hal-05606755v1
metaGE: Investigating genotype x environment interactions through GWAS meta-analysis Annaïg de Walsche,Alexis Vergne,Renaud Rincent,Fabrice Roux,Stéphane Nicolaset al. PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩ Article dans une revue hal-04994005v1
Phylogenetic relationships and genetic diversity of Tunisian maize landraces Mohamed Dhia Eddine Hammami,Delphine Madur,Zayneb Kthiri,Agustin Galaretto,Stéphane D Nicolaset al. PLoS ONE, 2025, 20 (1), pp.e0316185. ⟨10.1371/journal.pone.0316185⟩ Article dans une revue hal-05150986v1
Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity Carlotta Balconi,Agustin Galaretto,Rosa Ana Malvar,Stéphane D Nicolas,Rita Redaelliet al. Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩ Article dans une revue hal-04645117v1
High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions Baber Ali,Bertrand Huguenin-Bizot,Maxime J Laurent,François Chaumont,Laurie Maistriauxet al. TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩ Article dans une revue hal-04677733v1
Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression Laurie C Maistriaux,Maxime J Laurent,Linda Jeanguenin,Santiago Alvarez Prado,Joseph Naderet al. Plant Physiology, 2024, 196 (1), pp.368-384. ⟨10.1093/plphys/kiae326⟩ Article dans une revue hal-04639221v1
Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties Mariangela Arca,Brigitte Gouesnard,Tristan Mary‐huard,Marie‐christine Le Paslier,Cyril Baulandet al. Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩ Article dans une revue hal-04103846v2
Genetic diversity and selection signatures in a gene bank panel of maize inbred lines from Southeast Europe compared with two West European panels Vlatko Galić,Violeta Anđelković,Natalija Kravić,Nikola Grčić,Tatjana Ledenčanet al. BMC Plant Biology, 2023, 23 (1), pp.315. ⟨10.1186/s12870-023-04336-2⟩ Article dans une revue hal-04189388v1
Genetic diversity of maize landraces from the South-West of France Yacine Diaw,Christine Tollon-Cordet,Alain Charcosset,Stéphane D. Nicolas,Delphine Maduret al. PLoS ONE, 2021, 16 (2), pp.e0238334. ⟨10.1371/journal.pone.0238334⟩ Article dans une revue hal-03210018v1
Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array Mariangela Arca,Tristan Mary-Huard,Brigitte Gouesnard,Aurélie Bérard,Cyril Baulandet al. Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩ Article dans une revue hal-03368756v1
Maize adaptation across temperate climates was obtained via expression of two florigen genes Sara Castelletti,Aude Coupel-Ledru,Italo Granato,Carine Palaffre,Llorenç Cabrera-Bosquetet al. PLoS Genetics, 2020, 16 (7), pp.e1008882. ⟨10.1371/journal.pgen.1008882⟩ Article dans une revue hal-02916912v1
A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize Melisande Blein-Nicolas,Sandra Sylvia Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩ Article dans une revue hal-03009577v1
Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies Sandra Silvia Negro,Emilie Millet,Delphine Madur,Cyril Bauland,Valerie Combeset al. BMC Plant Biology, 2019, 19 (1), ⟨10.1186/s12870-019-1926-4⟩ Article dans une revue hal-02627073v1
High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array Clément Mabire,Jorge Duarte,Aude Darracq,Ali Pirani,Hélène Rimbertet al. BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6136-9⟩ Article dans une revue hal-02393099v1
CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield. Rafael Canas-Pendon Canas,Zhazira Yesbergenova-Cuny,Margaret Simons,Fabien Chardon,Patrick P. Armengaudet al. The Plant cell, 2018, 30, pp.946. ⟨10.1105/tpc.18.00273⟩ Article dans une revue hal-02624574v1
Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants Aude Darracq,Clémentine Vitte,Stephane S. Nicolas,Jorge Duarte,Jean-Philippe Pichonet al. BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩ Article dans une revue hal-02625253v1
Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. Rafael Canas-Pendon,Zhazira Yesbergenova-Cuny,Margaret Simons,Fabien Chardon,Patrick Armengaudet al. The Plant cell, 2017, 29 (5), pp.919-943. ⟨10.1105/tpc.16.00613⟩ Article dans une revue hal-01605953v1
Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts Jean-Tristan Brandenburg,Tristan Mary,Guillem Rigaill,Sarah J. Hearne,Hélène Cortiet al. PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩ Article dans une revue hal-01605143v1
Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank Brigitte Gouesnard,Sandra Silvia Negro,Amélie Laffray,Jeff Glaubitz,Albrecht Melchingeret al. TAG Theoretical and Applied Genetics, 2017, 130 (10), ⟨10.1007/s00122-017-2949-6⟩ Article dans une revue hal-01595534v1
Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies Stéphane D. Nicolas,Jean-Pierre Péros,Thierry Lacombe,Amandine Launay,Marie-Christine Le Paslieret al. BMC Plant Biology, 2016, 16 (1), pp.74. ⟨10.1186/s12870-016-0754-z⟩ Article dans une revue inserm-01322529v1
Testing the link between genome size and growth rate in maize Maud Tenaillon,Doménica Manicacci,Stephane Nicolas,Francois Tardieu,Claude Welcker PeerJ, 2016, 4, pp.e2408. ⟨10.7717/peerj.2408⟩ Article dans une revue hal-01461166v1
Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios Emilie Millet,Claude Welcker,Willem Kruijer,Sandra Negro,Aude Coupel-Ledruet al. Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.00621⟩ Article dans une revue hal-01362496v1
Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production Renaud Rincent,Stephane S. Nicolas,Sophie Bouchet,T. Altmann,Dominique D. Brunelet al. TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩ Article dans une revue hal-02637142v1
Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium Renaud Rincent,Laurence Moreau,Hervé Monod,Estelle Kuhn,Albrecht E Melchingeret al. Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩ Article dans une revue hal-02634244v1
The effect of long-term working memory through personalization applied to free recall : Uncurbing the primacy-effect enthusiasm Alessandro Guida,Doriane Gras,Y. Noel,Olivier Le Bohec,Christophe Quaireauet al. Memory and Cognition, 2013, 41, pp.571-587. ⟨10.3758/s13421-012-0284-3⟩ Article dans une revue halshs-01428585v1
Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus Sophie Bouchet,Bertrand Servin,Pascal Bertin,Delphine D. Madur,Valerie V. Combeset al. PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩ Article dans une revue hal-02652500v1
Genetic variability of berry size in grapevine (Vitis vinifera L.) Cléa Houel,Marie-Laure Magniette,Stéphane D. Nicolas,Thierry Lacombe,Loic Le Cunffet al. Australian Journal of Grape and Wine Research, 2013, 19 (2), pp.208-220. ⟨10.1111/ajgw.12021⟩ Article dans une revue hal-01223540v1
Predictive inferences activation during reading: interest of a Stroop-like task Doriane Gras,H. Tardieu,Stéphane Nicolas Swiss Journal of Psychology, 2012, 71, pp.141-148. ⟨10.1024/1421-0185/a000081⟩ Article dans une revue halshs-01440903v1
Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization Stephane S. Nicolas,Herve H. Monod,Frederique F. Eber,Anne-Marie Chèvre,Eric E. Jenczewski The Plant Journal, 2012, 70 (4), pp.691 - 703. ⟨10.1111/j.1365-313X.2012.04914.x⟩ Article dans une revue hal-01004194v1
Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time Marion Truntzler,N. Ranc,M. C. Sawkins,Stephane S. Nicolas,Doménica Manicacciet al. TAG Theoretical and Applied Genetics, 2012, 125 (4), pp.731 - 747. ⟨10.1007/s00122-012-1866-y⟩ Article dans une revue istex hal-02643782v1
Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness Brigitte Mangin,Aurélie Siberchicot,S. Nicolas,Agnes Doligez,Patrice Thiset al. Heredity, 2012, 108 (3), pp.285-291. ⟨10.1038/hdy.2011.73⟩ Article dans une revue hal-01267769v1
Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.) Renaud Rincent,Denis Laloë,Stephane Nicolas,T. Altmann,Dominique Brunelet al. Genetics, 2012, 192 (2), pp.715-728. ⟨10.1534/genetics.112.141473⟩ Article dans une revue hal-01019845v1
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects Alexis Dereeper,Stephane S. Nicolas,Loïc Le Cunff,Roberto Bacilieri,Agnès Doligezet al. BMC Bioinformatics, 2011, 12 (134), 14 p. ⟨10.1186/1471-2105-12-134⟩ Article dans une revue hal-02644798v1
Genetic regulation of meiotic cross-overs between related genomes in brassica napus haploids and hybrids Stephane Nicolas,Martine Leflon,Hervé Monod,Frédérique Eber,Olivier O. Coritonet al. The Plant cell, 2009, 21, pp.373-385. ⟨10.1105/tpc.108.062273⟩ Article dans une revue hal-02663581v1
Chromosome ‘speed dating’ during meiosis of polyploid Brassica hybrids and haploids Stephane Nicolas,Martine Leflon,Zhiqian Liu,Olivier O. Coriton,Anne-Marie Chèvreet al. Cytogenetic and Genome Research, 2008, pp.331-338 Article dans une revue hal-02653288v1
Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids Stephane Nicolas,Guillaume G. Le Mignon,Frederique F. Eber,Olivier O. Coriton,Hervé Monodet al. Genetics, 2007, 175 (2), pp.487-503. ⟨10.1534/genetics.106.062968⟩ Article dans une revue hal-02668271v1

Poster de conférence (33)

Mining Allelic diversity of maize landraces for abiotic and biotic stresses Nicolas Stéphane D.,Balconi Carlotta,Ana Ana Butron,Chaumont François,Gouesnard Brigitteet al. 26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy Poster de conférence hal-05302651v1
Predicting adaptation of maize landraces from genebanks by combining DNA-pool genotyping, genomic prediction and genomic offset Oscar Galaretto Agustin,Ana Malvar Rosa,Brigitte Gouesnard,Carlotta Balconi,Delphine Madur,et al. 26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy Poster de conférence hal-05302702v1
Pipeline for Haplotype Frequencies Estimation from Pooled Targeted Sequencing in Maize Minguella Raphaël,Aurélie Canaguier,Delphine Madur,Aurélie Bérard,Isabelle Le Claincheet al. AG France Génomique, Jun 2024, Evry courcouronnes, France. 2013, ⟨10.1093/molbev/mst016⟩ Poster de conférence hal-04670307v1
Genomic predictions and Genome-wide association studies on DNA pools to characterize traditional maize landraces and identify genomic regions associated with agronomic traits and environmental adaptation Sarah Ben-Sadoun,Agustin Oscar Galaretto,Antoine Roux,Brigitte Gouesnard,Alain Charcossetet al. 7. International Conference of Quantitative Genetics (ICQG7), Jul 2024, Vienna, Austria. Poster de conférence hal-04807728v1
Estimation of Haplotype Frequencies from Pooled Targeted Sequencing in Maize Landraces Minguella Raphaël,Aurélie Canaguier,Delphine Madur,Damien Hinsinger,Stephane Nicolaset al. 2ème carrefour de la sélection maïs, May 2024, Saclay, France. 2013, ⟨10.1093/molbev/mst016⟩ Poster de conférence hal-04670321v1
Natural variation in maize root hydraulic architecture may offer new insights into plant drought responses Oh Jeonghwa,Louai Rishmawi,Tournaire-Roux Colette,Cyril Bauland,Laura Galloet al. 66. Annual Maize Genetics Meeting, Feb 2024, Raleigh, United States. Poster de conférence hal-04519703v1
Genomic prediction and landscape genomics in a large maize landraces collection using high-throughput pool genotyping identifies promising sources of diversity for prebreeding Agustin O. Galaretto,Brigitte Gouesnard,Delphine Madur,Sarah Ben-Sadoun,Sarah Hearneet al. Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France Poster de conférence hal-04225415v1
Maize root hydraulic architecture and its response to water deficit Virginia Protto,Louai Rishmawi,J Oh,Xuelian Li,Laura Galloet al. 10. International Symposium on Root Development, May 2023, Ghent, Belgium. Poster de conférence hal-04466536v1
Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali,Melisande Blein-Nicolas,Annick Moing,Jorge Duarte,Stéphane Bernillonet al. Congrès Analytics 2022, Sep 2022, Nantes, France. Poster de conférence hal-03879730v1
Genetic variability of the expression of plasma membrane aquaporins in maize leaves: from eQTLs to characterization of cis-and trans-acting regulatory factors Laurie Maistriaux,Maxime J. Laurent,Estelle Teirlinckx,Linda Jeanguenin,Santiago Alvarez Pradoet al. 63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States Poster de conférence hal-03368769v1
Maize root hydraulic architecture and its response to water deficit Virginia Protto,Louai Rishmawi,Yann Boursiac,Colette Tournaire-Roux,Fabrice Baugetet al. 63. Annual Maize Genetics Meeting, Mar 2021, Online, United States. Poster de conférence hal-03368767v1
Maize root hydraulic architecture and its response to water deficit Virginia Protto,Louai Rishmawi,Yann Boursiac,Colette Tournaire-Roux,Fabrice Baugetet al. ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online, United States. Poster de conférence hal-04167184v1
Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali,Mélisande Blein,Annick Moing,Jorge Duarte,Thierry Bertonet al. 63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States Poster de conférence hal-03368764v1
Systems genetics of drought-related traits in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France. Poster de conférence hal-03879878v1
Expanding european flint maize panels for genome-wide association and genomic selection studies Alain Charcosset,Stephane S. Nicolas,Delphine Madur,Valerie Combes,Sophie Pinet al. 61. Annual maize genetics conference, Mar 2019, St Louis, United States. , 335 p., 2019, 61st Annual Maize Genetics Conference Program and Abstracts Poster de conférence hal-02735057v1
Responses to selection for adaptation to temperate conditions in tropical drought tolerant maize production Brigitte Gouesnard,Anne Zanetto,Carine Palaffre,Romain Chapuis,Mariangela Arcaet al. 3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources Poster de conférence hal-02736402v1
Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing Brigitte Gouesnard,Sandra Silvia Negro,Amélie Laffray,Jeff Glaubitz,A.E. Melchingeret al. 3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources Poster de conférence hal-02734558v1
Systems genetics of drought-related traits in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. 60th Annual Maize Genetics Conference, Mar 2018, Paris, France Poster de conférence hal-03879934v1
Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants. A. Darracq,Clémentine Vitte,S. Nicolas,J. Duarte,J.P. Pichonet al. 60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France Poster de conférence hal-04478798v1
Development of a new high-throughput 105K presence/absence variation genotyping array for quantitative genetic studies. C. Mabire,J. Duarte,A. Darracq,A. Piranni,H. Rimbertet al. 60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France Poster de conférence hal-04478801v1
Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank Brigitte Gouesnard,Sandra Negro,Amélie Laffray,Jeff Glaubitz,Albrecht Melchingeret al. 60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts Poster de conférence hal-02734953v1
Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing Brigitte Gouesnard,Sandra Negro,Amélie Laffray,Jeff Glaubitz,Albrecht Melchingeret al. 60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts Poster de conférence hal-02734955v1
Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools Stephane S. Nicolas,Mariangela Arca,Tristan Mary-Huard,Marie-Christine Le Paslier,Cyril Baulandet al. 60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts Poster de conférence hal-02733631v1
Exploring QTLxE in a network of fields: identification of QTLs associated with scenarios of heat and drought for predicting yields in future climates Emilie Millet,W. Kruijer,Stephane Nicolas,Aude Coupel-Ledru,Alain Charcossetet al. Interdrought V, Feb 2017, Hyderabad, India. 2017 Poster de conférence hal-01605102v1
Genome wide association study for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France. Poster de conférence hal-03879943v1
Diversity analysis within a collection of 1191 Flint collection using Genotyping By Sequencing Brigitte Gouesnard,Sandra Negro,Amélie Laffray,Jeff Glaubitz,Albrecht Melchingeret al. 4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany. , 2017 Poster de conférence hal-02789732v1
Towards genome-wide association studies under abiotic stress in &lt;em&gt;Vitis vinifera&lt;/em&gt; Agnes Doligez,Loic L. Le Cunff,Timothée Flutre,Amandine Launay,Stephane S. Nicolaset al. ClimWine 2016 (Sustainable grape and wine production in the context of climate change), Apr 2016, Bordeaux, France. 152 p., 2016, Sustainable grape and wine production in the context of climate change Poster de conférence hal-02742772v1
BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies Yannick de Oliveira,Lydia Ait-Braham,Johann Joets,Clément Mabire,Sandra Negroet al. 5ième meeting annuel d’AMAIZING, Nov 2016, Paris, France Poster de conférence hal-01404747v1
Comparison of High-Throughput Genotyping Technologies in Maize: Increase in number of regions detected in association genetics Sandra Silvia Negro,Emilie Millet,W. Kruijer,Delphine Madur,Marie-Christine Le Paslieret al. Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015 Poster de conférence hal-01535330v1
Adaptation to temperate conditions of sub-tropical drought tolerant maize populations Brigitte Gouesnard,Anne Zanetto,Mariangela Arca,Stephane S. Nicolas,Alain A. Charcossetet al. Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015 Poster de conférence hal-02743412v1
Genetic structure and linkage disequilibrium in 4 species of the Vitis genus Patrice P. This,Stephane Nicolas,Alexis Dereeper,Agnès Doligez,Jean-Pierre Peroset al. Génoplante, Mar 2010, Pont Royal, France. 2010 Poster de conférence hal-02818909v1
SNiPlay : A web application for detection, management and analysis of SNP Alexis Dereeper,Stephane Nicolas,Loic L. Le Cunff,Roberto Bacilieri,Agnès Doligezet al. 10. international conference on grapevine breeding and genetics, Aug 2010, Geneva (New York), United States. 2010 Poster de conférence hal-02824316v1
Genetic structure and linkage disequilibrium in 4 Vitis species Stephane Nicolas,Jean-Pierre Peros,Patrice P. This,Thierry Lacombe,Valerie V. Laucouet al. Grapevine breeding and genetics, Aug 2010, Geneva, New York, United States. , 2010 Poster de conférence hal-02822150v1

Communication dans un congrès (49)

Charaterization of maize landraces to identify source of diversity Stephane Nicolas,Sarah Ben-Sadoun,Mariangela Arca,Galaretto Agustin Oscar,Mary-Huard Tristanet al. 26. EUCARPIA Maize and Sorghum Conference, Silvio Salvi; Francesco Camerlengo; Elisabetta Frascaroli; Marco Maccaferri; Cristian Forestan; Roberto Tuberosa, Jun 2025, Bologna, Italy Communication dans un congrès hal-05302662v1
Complementing genomics with platform omics help decipher the genetic architecture of in-field productivity in the presence of genotype by Environment interactions. Baber Ali,Stephane Nicolas,Melisande Blein-Nicolas,Tristan Mary-Huard,Alain Charcossetet al. 3rd GxExM Symposium, Oct 2024, Wageningen, Netherlands Communication dans un congrès hal-05201495v1
Exploring European maize genetic resources for adaptation using high-throughout genotyping, genomic prediction and landscape genomics Galaretto Agustin Oscar,Carlotta Balconi,Rosa Ana Malvar,Rita Redaelli,Violeta Andjelkovicet al. 22. EUCARPIA General Congress, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Aug 2024, Leizpig, Germany Communication dans un congrès hal-04807689v1
Predicting seed composition and agronomic traits in maize genetic resources using phenomic selection based on near-infrared spectra Stéphane D Nicolas,Sarah Ben-Sadoun,Renaud Rincent,Moreau Laurence,Alain Charcossetet al. Joint PRO-GRACE/EMPHASIS policy symposium and workshop about plant genetic resources and phenotyping, Euroseeds, Jun 2024, Brussels, Belgium Communication dans un congrès hal-04807968v1
MineLandDiv - Mining Allelic Diversity in maize Landraces for Tolerance to Abiotic and Biotic stresses Stephane Nicolas FACCE-JPI and GEH Joint Conference 2024 "Toward New Horizons Sustainable solutions in Agri-Food and Biotechnology", FACCE-JPO and Green Era-Hub (GEH), Oct 2024, Berlin, Germany Communication dans un congrès hal-04807770v1
Whole genome sequencing of 650 maize lines from two association panel, an unprecedented ressource for deciphering genetic diversity and better understanding genotype-phenotype relationship Stephane Nicolas Séminaire de Clôture du projet SeqOccin, GenoToul Get Plage; GenoToul Bioinformatics, Oct 2023, Toulouse, France Communication dans un congrès hal-04808013v1
Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties Stéphane Nicolas,Antoine Roux,Sarah Ben-Sadoun,Mariangela Arca,Agustin O. Galarettoet al. Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France Communication dans un congrès hal-04225361v1
Genomic selection and Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties Stephane Nicolas,Antoine Roux,Sarah Ben-Sadoun,Mariangela Arca,Tristan Mary-Huardet al. 2. Colloque INRAE Genomics, INRAE Genomics, Nov 2023, Bordeaux, France Communication dans un congrès hal-04808004v1
Proteomics-based systems approach of maize response to water deficit Melisande Blein-Nicolas,Yacine Djabali,Claude Welcker,Llorenç Cabrera-Bosquet,Stephane Nicolaset al. 5. INPPO International Plant Proteomics Organization, May 2023, Thessaloniki, Greece Communication dans un congrès hal-04302629v1
Caractériser la diversité génétique et application à l’étude de caractères Stephane Nicolas,Mariagela Arca,Yacine Diaw,Antoine Roux,Romane Guilbaudet al. 1. Carrefour de la sélection du Maïs, Pro Maïs; INRAE, Nov 2022, Montpellier, France Communication dans un congrès hal-04808039v1
Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques Yacine Djabali,Melisande Blein-Nicolas,Stephane Nicolas Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Communication dans un congrès hal-03878368v1
Développement d'une puce de génotypage haut débit des Insertions/Délétions chez le maïs : Application aux études d'associations pangénomiques Clément Mabire,Romane Guilbaud,Jorge Duarte,Aude Darracq,Ali Piraniet al. Rencontre Science et Parteneriat Plant2Pro, Plant2Pro, Jun 2022, Paris, France Communication dans un congrès hal-04807992v1
Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize Clément Mabire,Romane Guilbaud,Jorge Duarte,Aude Darracq,Ali Piranniet al. XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding, May 2022, Belgrade, Serbia Communication dans un congrès hal-04225603v1
Integrated acclimation responses of maize root hydraulic architecture to water deficit Protto Virginia,Bauget Fabrice,Rishmawi Louai,Tournaire-Roux Colette,Boursiac Yannet al. EMBO Workshop - Molecular responses of plants facing climate change, Jun 2022, Montpellier, France Communication dans un congrès hal-04010083v1
A systems approach of drought tolerance in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabreraet al. AMAIZING Final Conference, Sep 2021, Online, France Communication dans un congrès hal-03879824v1
A systems approach of drought response in maize Melisande Blein-Nicolas,Yacine Djabali,Thierry Balliau,Llorenç Cabrera,Claude Welckeret al. Journée SPS-CLAND, Sep 2021, Online, France Communication dans un congrès hal-03879816v1
A systems approach of drought response in maize Melisande Blein-Nicolas,Yacine Djabali,Thierry Balliau,Llorenç Cabrera-Bosquet,Sandra Negroet al. Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France Communication dans un congrès hal-03879809v1
Systems genetics of drought-related traits in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom Communication dans un congrès hal-03879843v1
Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies Stéphane Nicolas,Sandra Negro,Emilie Millet,Delphine Madur,Cyril Baulandet al. 24. Eucarpia Maize and Sorghum Conference, Oct 2019, Freising, Germany Communication dans un congrès hal-03368737v1
Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabreraet al. Journée SFEAP-SFSM, Apr 2019, Paris, France Communication dans un congrès hal-03879865v1
Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools Stephane Nicolas,Mariangela Arca,Tristan Mary Huard,Marie-Christine Le Paslier,Cyril Baulandet al. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France Communication dans un congrès hal-03368726v1
Systems genetics of drought tolerance in maize Melisande Blein-Nicolas,Sandra Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera-Bosquetet al. Symposium GisBV, Oct 2019, Paris, France Communication dans un congrès hal-03879857v1
Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies Stephane S. Nicolas,Sandra Silvia Negro,Emilie Millet,Delphine Madur,Cyril Baulandet al. European maize meeting, May 2019, Montpellier, France Communication dans un congrès hal-02788231v1
Contribution des Insertion/Délétions à la variations des caractères, l’adaptation et aux performances hybrides au moyen d’une puce de génotypage haut débit Clément Mabire,Jorge Duarte,Johann Joets,Julie B Fiévet,Romane Guilbaudet al. Colloque GIS-BV, Jul 2019, Paris, France Communication dans un congrès hal-02787704v1
Regulation of aquaporin expression in maize: proximal and distal eQTLs Laurie C Maistriaux,Linda Jeanguenin,Santiago Alvarez Prado,Stephane S. Nicolas,Claude Welckeret al. 60. Maize Genetics Conference, Mar 2018, Saint-Malo, France Communication dans un congrès hal-02737313v1
Development of a new high throughput 105K Presence/Absence Variation genotyping array for quantitative genetic studies Clément Mabire,Jorge Duarte,Aude Darracq,Ali Pirani,Hélène Rimbertet al. 60. Maize Genetics Conference, Mar 2018, St Malo, France Communication dans un congrès hal-02787197v1
Design of high-troughput Presence/Absence Variant genotyping array in maize based on Affymetrix Technology Jorge Duarte,Aude Darracq,Hélène Rimbert,Clementine Vitte,Johann Joetset al. Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2018, Evry, France Communication dans un congrès hal-02787234v1
Genome-wide association studies between 60 000 Present/Absent Variants and 29 agronomic traits using a high throughput genotyping array Stephane S. Nicolas Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", 2018 Communication dans un congrès hal-02786378v1
Deciphering the interest of integrating PAV genomic information in genetic analysis by investigating the extent of linkage disequilibrium Clément Mabire,Jorge Duarte,Delphine Madur,Valerie Combes,Johann Joetset al. Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jun 2018, Rennes, France Communication dans un congrès hal-02786354v1
Towards genome-wide association studies under abiotic stress in Vitis vinifera Agnes Doligez,Loic Le Cunff,Timothée Flutre,Amandine Launay,Stephane Nicolaset al. Genetic resources section meeting of Eucarpia, May 2017, Montpellier, France Communication dans un congrès hal-01603111v1
Heterosis in maize : intermated recombinant inbred lines and their immortalized F2 reveal QTLs with dominant effects but no overdominance Julie Fievet,Sarah Ben Sadoun,Tristan Mary,Stephane Nicolas,Matthieu Falqueet al. 59. Maize Genetics Conference, Mar 2017, Saint-Louis, United States Communication dans un congrès hal-01569899v1
Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools Stephane S. Nicolas,Mariangela Arca,Tristan Mary-Huard,Marie-Christine Le Paslier,Cyril Baulandet al. 4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany Communication dans un congrès hal-02785295v1
GWAS for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas,Thierry Balliau,Llorenç Cabrera-Bosquet,Hélène Corti,Claude Welckeret al. Journées du Protéome Vert, Mar 2017, Paris, France Communication dans un congrès hal-03879954v1
DNA pooling for evaluating originality of the landraces Stephane S. Nicolas,Mariangela Arca,Tristan Mary-Huard,Brigitte Gouesnard,Marie-Christine Le Paslieret al. 1. German-French Maize Breeders School, May 2017, Hohenheim, Germany Communication dans un congrès hal-02786301v1
Combining bulk segregant analysis with high-troughput resequencing to map and clone natural mutations involved in trait variation: First lessons from the early flowering time recessive mutation F7p Stephane S. Nicolas Colloque EPGV 2016 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2016, Angers, France Communication dans un congrès hal-02795374v1
Genome-wide association study between 60 000 Present/Absent Variants and 29 agronomic traits using a new high throughput genotyping array Clément Mabire,Jorge Duarte,Jean-Philippe Pichon,Johann Joets,Aude Darracqet al. Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jul 2016, Paris, France Communication dans un congrès hal-02795575v1
Association mapping for transition to autotrophic growth under chilling conditions in maize Christophe Clipet,J.F. Hû,Renaud Rincent,Sandrine Negro,Stephane Nicolaset al. Eucarpia 2016. Plant Breeding: the Art of Bringing Science to Life, Aug 2016, Zürich, Switzerland Communication dans un congrès hal-01603576v1
Screening germplasm for adaptation to drought and temperature Lucie Pinasseau,Agnes Doligez,Angelique Adiveze,Agnès Ageorges,Dalel Ahmedet al. Innovine, innovation in vineyard, 2016, Toulouse, France. 2 p Communication dans un congrès hal-02798435v1
Genetic variability of the sensitivity of grain number to drought and high temperature in maize Emilie Millet,Sandra Silvia Negro,Willem Kruijer,Stephane S. Nicolas,Fred van Eeuwijket al. Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France Communication dans un congrès hal-02740735v1
A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding Mariangela Arca,Tristan Mary-Huard,Brigitte Gouesnard,Marie-Christine Le Paslier,Cyril Baulandet al. 23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France Communication dans un congrès hal-02799117v1
GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data Delphine Steinbach,Guillaume Merceron,Célia Michotey,Raphaël-Gauthier Flores,Nacer Mohellibiet al. 23. Plant and Animal Genome, Jan 2015, San Diego, United States Communication dans un congrès hal-01174322v1
A new high-throughput approach to characterize Presence/Absence Variant in Maize based on Affymetrix technology Stephane S. Nicolas,Aude Darracq,Ali Pirani,Hélène Rimbert,Clément Mabireet al. Workshop Series DynaGeV (Dynamique des Génomes Végétaux), May 2015, Toulouse, France Communication dans un congrès hal-02795342v1
Genetic diversity, grape evolution and usefulness of natural variation for the understanding of complex traits in grape and breeding Patrice P. This,Jean-Michel Boursiquot,Thierry Lacombe,Stephane S. Nicolas,Valerie V. Laucouet al. 11. International conference on grape breeding and genetics, Jul 2014, Beijing, China Communication dans un congrès hal-02794117v1
A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping Célia Michotey,Frédéric Sapet,Pierre Dubreuil,Jacques Le Gouis,Mathilde Causseet al. Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France Communication dans un congrès hal-01268379v1
Genetic structure and linkage disequilibrium in 4 Vitis species Patrice This,Stephane Nicolas,Jean-Pierre Peros,Thierry Lacombe,Loic Le Cunffet al. Plant and Animal Genomes Conference, Jan 2011, San Diego, United States Communication dans un congrès hal-01506173v1
SNiPlay: A web-based tool for detection, management and analysis of SNP Alexis Dereeper,S. Nicolas,Gregory Carrier,Loic Le Cunff,Roberto Bacilieriet al. Plant and Animal Genomes Conference, 2011, San Diego, United States Communication dans un congrès hal-01506172v1
Association genetics in relation with berry size variation in grapevine (Vitis vinifera) Cléa Houel,Isabelle I. Le Clainche,Aurelie A. Canaguier,Anne-Francoise A.-F. Adam-Blondon,Rémi Bounonet al. 10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States Communication dans un congrès hal-02754943v1
Allele mining in grape for the analysis of complex traits Roberto Bacilieri,Stephane Nicolas,Richard Bounon,Alexis Dereeper,Marie-Christine Le Paslieret al. 18. Conference, Jan 2010, San Diego, United States Communication dans un congrès hal-02754346v1
Genetic structure and linkage disequilibrium in four Vitis species Stephane Nicolas,Jean-Pierre Peros,Patrice P. This,Thierry Lacombe,L. Le Cunffet al. 10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States Communication dans un congrès hal-02756085v1

Pré-publication, Document de travail (9)

Large genetic variability of maize leaf palatability to european corn borer : metabolic insights Inoussa Sanane,Stephane Nicolas,Cyril Bauland,Frédéric Marion-Poll,Camille Noûset al. 2023 Pré-publication, Document de travail hal-04189421v1
metaGE: Investigating Genotype × Environment interactions through meta-analysis Annaïg de Walsche,Alexis Vergne,Renaud Rincent,Fabrice Roux,Stephane Nicolaset al. 2024 Pré-publication, Document de travail hal-04507780v1
Genetic diversity of maize landraces from the South-West of France Yacine Diaw,Christine Tollon-Cordet,Alain Charcosset,Stephane Nicolas,Delphine Maduret al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02965051v1
Diversity patterns and selective sweeps in a Southeast European panel of maize inbred lines as combined with two West European panels Vlatko Galić,Violeta Anđelković,Natalija Kravić,Nikola Grčić,Tatjana Ledenčanet al. 2021 Pré-publication, Document de travail hal-03372006v1
Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool Mariangela Arca,Brigitte Gouesnard,Tristan Mary-Huard,Marie-Christine Le Paslier,Cyril Baulandet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02965049v1
Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca Mariangela Arca,Tristan Mary-Huard,Cyril Bauland,Brigitte Gouesnard,Aurélie Berardet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02965048v1
Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize M. Blein,Sandra Silvia Negro,Thierry Balliau,Claude Welcker,Llorenç Cabrera Bosquetet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788569v1
Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies Sandra Silvia Negro,Emilie Millet,Delphine Madur,Cyril Bauland,Valerie Combeset al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02786986v1
High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® Axiom® array Clement Mabire,Duarte Jorge,Aude Darracq,Ali Pirani,Hélène Rimbertet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02788790v1

Autre publication scientifique (1)

Flowering-related traits and florigen expression in a collection of maize inbred lines Aude Coupel-Ledru,Sara Castelletti,Ítalo Stefanine Correia Granato,Carine Palaffre,Llorenç Cabrera-Bosquetet al. Recherche Data Gouv, 2020, ⟨10.15454/XTHN7I⟩ Autre publication scientifique hal-04719728v1

Thèse (1)

CONTROLE GENETIQUE DE LA RECOMBINAISON HOMEOLOGUE CHEZ LES HAPLOIDES DE COLZA (BRASSICA NAPUS L.) Stéphane D. Nicolas Génétique des plantes. Ecole Nationale Supérieure Agronomique de Rennes, 2007. Français. ⟨NNT : 2006NSARH069⟩ Thèse tel-01689186v1