stephane uroz Directeur de Recherche (DR2)Coordinateur du programme interdisciplinaire ARTEMIS

Identifiants chercheurs

IdHAL :

stephane-uroz

ORCID :

0000-0001-9412-7210

IdRef :

084076208

VIAF :

208158980

ISNI :

0000000139568830

Présentation

The 22th of october 2004, I was hired as Junior Research associate (CR2) in the EFPA (now ECODIV) department of the French National Institute for Agricultural Reasearch (INRA), at the interface between two research units: i) The “Tree microbes interactions” (IAM, UMR1136) unit and ii) the “Biogeochemical cycles in forest ecosystems” (BEF, UR1138) unit. I am member of the Ecogenomic and mineral weathering teams. In January 2009, I became Research associate (CR1).

The 24th of februrary 2014, I defended my HDR (Habilitation à diriger des recherches) entitled “Ecology of biotic and abiotic interactions of the forest soil bacterial communities: characterization of the actors, mechanims and related genes” (Jury: C. MOUGEL, P. SIMONET, S. VUILLEMIER, R. MARMEISSE, L. MOULIN, P. LEBLOND, E. GELHAYE, P. OGER and P. FREY-KLETT).

I was appointed INRA Research Director (DR2) in december 2014. I was head of the Ecogenomics of interactions team in from January 2020 to december 2021. I was Head of the Cluster of Excellence ARBRE with Myriam LEGAY and Mathieu PETRISSANS from 2022 to 2025. I was appointed Head of the Interdisciplinary Programme ARTEMIS from Lorraine Université d'Excellence with Myriam LEGAY and Mathieu PETRISSANS in November 2024.

My main collaborator is Marie-Pierre TURPAULT (Geochemist and mineralogist) and Cintia BLANCO NOUCHE (PhD). I am also involved in several projects related to microbial ecology, interactions between bacteria/fungi and signalling between bacteria with the colleagues of the Ecogenomic team (M. BUEE, A. DEVEAU, F.MARTIN, L. AUER, E. MORIN).

RESEARCH TOPICS:

My current projects, integrated in a more global questioning related to forest ecosystem functioning and sustainability, are linking genomics on model bacterial strains to microbial ecology:

Forest soil as a reservoir of microbial biodiversity

(specific diversity by monogenic metagenomics, global approach by massive metagenomics and functional metagenomics)

Forest soil as a reservoir of

mineral weathering

bacteria (functional diversity, genetics, genomics link to biogeochemistry and mineralogy)

Minerals and rocks

as microbial habitats (

mineralosphere

)

Microbial interactions and functions in the

rhizosphere and mycorrhizosphere

(e.g., quorum sensing ; competition)

Impact of

nutrient availability

(inorganic nutrients)/ soil type /tree species on bacterial communities

Impact of

drought

on the distribution and functioning of the bacterial communities

Impact of the microorganisms on the

nutrient cycle

(geomicrobiology)

Genomics and genetics

of mineral weathering bacteria

COLLABORATIONS : [Phil Oger]https://map.insa-lyon.fr/fr/content/oger-philippe (CNRS-INSA, Lyon), PE Courty (INRAE, Dijon), Johan H.J. Leveau (Univ. Davis, USA), Wietse de Boer (NIOO-KNAW, Netherlands), Jussi Heinonsalo (Univ. Helsinki, Finland), Jean Armengaud (CEA-Marcoule, Bagnols-sur-Cèze), Cédric Paris (ENSAIA/UL, Vandoeuvre-les-Nancy).

Publications

Article dans une revue (92)

Phosphate availability modulates the weathering effectiveness and molecular response of Caballeronia mineralivorans PML1(12) Cintia Blanco Nouche,Judith Sar,Carine Cochet,Jean Armengaud,Marie-Pierre Turpaultet al. BMC Microbiology, 2025, 25 (1), pp.555. ⟨10.1186/s12866-025-04221-y⟩ Article dans une revue hal-05270987v1
Decoding Collimonas pratensis PMB3(1) responses during biotite interaction and dissolution: a multi-omics and geochemical perspective Laura Picard,Marie-Pierre Turpault,Jean Armengaud,Stéphane Uroz Applied and Environmental Microbiology, In press, 91 (10), ⟨10.1128/aem.00704-25⟩ Article dans une revue hal-05270984v1
Feedback effect of the size of mineral particles on the molecular mechanisms employed by Caballeronia mineralivorans PML1(12) to weather minerals Cintia Blanco Nouche,Carine Cochet,Marie-Pierre M.-P. Turpault,Stéphane Uroz npj Materials Degradation, 2024, 8 (1), pp.129. ⟨10.1038/s41529-024-00544-9⟩ Article dans une revue hal-04864217v1
Draft genome sequence of Collimonas sp. strain H4R21, an effective mineral-weathering bacterial strain isolated from the beech rhizosphere Morin E.,Stéphane Uroz,Kumar R.,Rey M.W.,Pham J.et al. Microbiology Resource Announcements, 2024, 13 (8), ⟨10.1128/mra.00308-24⟩ Article dans une revue hal-04672477v1
Acidification-based mineral weathering mechanism involves a glucose/methanol/choline oxidoreductase in Caballeronia mineralivorans PML1(12) Cintia Blanco Nouche,Laura Picard,Carine Cochet,Cédric Paris,Philippe Ogeret al. Applied and Environmental Microbiology, 2024, 90 (12), ⟨10.1128/aem.01221-24⟩ Article dans une revue hal-04771098v1
Collimonas rhizosphaerae sp. nov., a novel species isolated from the beech rhizosphere Stéphane Uroz,Ségolène Bouche,Emmanuelle Morin,Mathilde Bocquart,Ravi Kumaret al. International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (7), pp.006481. ⟨10.1099/ijsem.0.006481⟩ Article dans une revue hal-04672474v1
The cultivation regimes of Morchella sextelata trigger shifts in the community assemblage and ecological traits of soil bacteria Qi Zhao,Stéphane Uroz,Tianpeng Gao,Jing Li,Fengqin Heet al. Frontiers in Microbiology, 2023, 14 (5), pp.1257905. ⟨10.3389/fmicb.2023.1257905⟩ Article dans une revue hal-04216180v1
Mineral weathering by Collimonas pratensis PMB3(1) as a function of mineral properties, solution chemistry and carbon substrate Laura Picard,Cintia Blanco Nouche,Carine Cochet,Marie-Pierre Turpault,Stéphane Uroz npj Materials Degradation, 2023, 7 (1), pp.76. ⟨10.1038/s41529-023-00396-9⟩ Article dans une revue hal-04216176v1
Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil Sophie Mieszkin,Blandine Trouche,Julien Ancousture,Youssef Raouf,Stéphane Urozet al. International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (3), pp.005793. ⟨10.1099/ijsem.0.005793⟩ Article dans une revue hal-04236566v1
The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals Cintia Blanco Nouche,Cédric Paris,Tiphaine Dhalleine,Phil M. Oger,Marie-Pierre Turpaultet al. Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩ Article dans une revue hal-04297012v1
Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon Stephane Uroz,Océane Geisler,Laure Fauchery,Raphaël Lami,Alice M.S. Rodrigueset al. FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩ Article dans une revue hal-03915632v1
Recent progress in understanding the ecology and molecular genetics of soil mineral weathering bacteria Stéphane Uroz,Laura Picard,Marie-Pierre Turpault Trends in Microbiology, 2022, 30 (9), pp.882-897. ⟨10.1016/j.tim.2022.01.019⟩ Article dans une revue hal-03614493v1
The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system Laura Picard,Cédric Paris,Tiphaine Dhalleine,Emmanuelle Morin,Phil M. Ogeret al. Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩ Article dans une revue hal-03194986v1
Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria François Thomas,Nolwen Le Duff,Ting-Di Wu,Aurélie Cébron,Stéphane Urozet al. The International Society of Microbiologial Ecology Journal, 2021, 15 (10), pp.3062-3075. ⟨10.1038/s41396-021-00987-x⟩ Article dans une revue hal-03220808v1
Acidisoma silvae sp. nov. and Acidisoma cellulosilytica sp. nov., Two Acidophilic Bacteria Isolated from Decaying Wood, Hydrolyzing Cellulose and Producing Poly-3-hydroxybutyrate Sophie Mieszkin,Eva Pouder,Stéphane Uroz,Christelle Simon-Colin,Karine Alain Microorganisms, 2021, 9 (10), pp.2053. ⟨10.3390/microorganisms9102053⟩ Article dans une revue hal-03357174v1
Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1) Laura Picard,Marie-Pierre M.-P. Turpault,Phil M. Oger,Stephane Uroz FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩ Article dans une revue hal-03000681v1
Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood S. Mieszkin,P. Richet,C. Bach,C. Lambrot,Laurent Augustoet al. Soil Biology and Biochemistry, 2021, 155, pp.1-12. ⟨10.1016/j.soilbio.2021.108160⟩ Article dans une revue hal-03195736v1
Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities Y. Colin,M.-P. Turpault,L. Fauchery,Marc Buée,Stéphane Uroz European Journal of Soil Biology, 2021, 105, pp.103334. ⟨10.1016/j.ejsobi.2021.103334⟩ Article dans une revue hal-03336939v1
Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral Stephane Uroz,Laura Picard,Marie-Pierre M.-P. Turpault,Lucas Auer,J. Armengaudet al. Environmental Microbiology, In press, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩ Article dans une revue hal-02902180v1
Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain Laura Picard,Phil M. Oger,Marie-Pierre M.-P. Turpault,Stephane Uroz Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩ Article dans une revue hal-02939115v1
Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect Pierre Plassart,Nicolas Chemidlin Prévost-Bouré,Stéphane Uroz,Samuel S. Dequiedt,Dorothy Stoneet al. Scientific Reports, 2019, 9 (1), pp.1-17. ⟨10.1038/s41598-018-36867-2⟩ Article dans une revue hal-02067245v1
A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability O Nicolitch,M Feucherolles,J.-L Churin,Laure Fauchery,M.-P Turpaultet al. Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-50730-y⟩ Article dans une revue hal-02913039v1
Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum Richard Splivallo,Maryam Vahdatzadeh,Jose G Maciá-Vicente,Virginie Molinier,Martina Peteret al. Frontiers in Microbiology, 2019, 10, pp.1437. ⟨10.3389/fmicb.2019.01437⟩ Article dans une revue hal-02264371v1
Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351] S. Uroz,Phil M. Oger Systematic and Applied Microbiology, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩ Article dans une revue hal-02122345v1
Plant Symbionts Are Engineers of the Plant-Associated Microbiome Stéphane Uroz,Pierre-Emmanuel Courty,Phil M. Oger Trends in Plant Science, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩ Article dans une revue hal-02334474v1
Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino P E Courty,Marc Buée,J J T Tech,D Brulé,Yannick Colinet al. Mycorrhiza, 2018, 28 (4), pp.343-356. ⟨10.1007/s00572-018-0829-9⟩ Article dans une revue hal-01815206v1
Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria Francis Martin,Stéphane Uroz,David Barker Science, 2017, 356 (6340), pp.1-9. ⟨10.1126/science.aad4501⟩ Article dans une revue hal-01606874v1
Identification, distribution, and quantification of biominerals in a deciduous forest Célia Krieger,Christophe Calvaruso,C. Morlot,Stéphane Uroz,L. Salsiet al. Geobiology, 2017, 15 (2), pp.296-310. ⟨10.1111/gbi.12223⟩ Article dans une revue hal-01594541v1
Mineral types and tree species determine the functional and taxonomic structures of forest soil bacterial communities Yannick Colin,Océane Nicolitch-Café,Marie-Pierre M.-P. Turpault,Stéphane Uroz Applied and Environmental Microbiology, 2017, 83 (5), pp.e02684-16. ⟨10.1128/AEM.02684-16⟩ Article dans une revue hal-01548673v1
HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family Marta Torres,Stéphane Uroz,Rafael Salto,Laure Fauchery,Emilia Quesadaet al. Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-01176-7⟩ Article dans une revue hal-01568881v1
Soil networks become more connected and take up more carbon as nature restoration progresses. Elly Morriën,S Emilia Hannula,L Basten Snoek,Nico R Helmsing,Hans Zweerset al. Nature Communications, 2017, 8, pp.1-10. ⟨10.1038/ncomms14349⟩ Article dans une revue hal-01581635v1
Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil M. Crampon,A. Cébron,F. Portet-Koltalo,S. Uroz,F. Le Derfet al. Environmental Pollution, 2017, 225, pp.663-673. ⟨10.1016/j.envpol.2017.03.053⟩ Article dans une revue hal-01597866v1
Tree roots select specific bacterial communities in the subsurface critical zone Océane Nicolitch,Yannick Colin,Marie-Pierre M.-P. Turpault,Laure Fauchery,Stéphane Uroz Soil Biology and Biochemistry, 2017, 115, pp.109-123. ⟨10.1016/j.soilbio.2017.07.003⟩ Article dans une revue hal-01683170v1
Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence Yannick Colin,Océane Nicolitch-Café,J. D. van Nostrand,J Z Zhou,Marie-Pierre M.-P. Turpaultet al. Scientific Reports, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩ Article dans une revue (article de synthèse) hal-01611454v1
Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere. Stéphane Uroz,Phil M. Oger Systematic and Applied Microbiology, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩ Article dans une revue hal-01644024v1
Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees Océane Nicolitch-Café,Yannick Colin,Marie-Pierre M.-P. Turpault,Stéphane Uroz Soil Biology and Biochemistry, 2016, 103, pp.429-445. ⟨10.1016/j.soilbio.2016.09.018⟩ Article dans une revue hal-01490771v1
Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems Stéphane Uroz,Marc Buée,Aurélie Deveau,Sophie Mieszkin,Francis Martin Soil Biology and Biochemistry, 2016, 103, pp.471-488. ⟨10.1016/j.soilbio.2016.09.006⟩ Article dans une revue (article de synthèse) hal-01490075v1
Temporal changes of bacterial communities in the &lt;i&gt;Tuber melanosporum &lt;/i&gt; ectomycorrhizosphere during ascocarp development Aurélie Deveau,Sanjay Antony-Babu,François Le Tacon,Christophe Robin,Pascale Frey-Klettet al. Mycorrhiza, 2016, 26 (5), pp.389-399. ⟨10.1007/s00572-015-0679-7⟩ Article dans une revue hal-01477465v1
Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities S. Uroz,P. Oger,E. Tisserand,A. Cebron,M. -P. Turpaultet al. Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩ Article dans une revue hal-01579579v1
Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing L. Kelly,Yannick Colin,M-P. Turpault,Stephane Uroz Microbial ecology, 2016, 72 (2), pp.428-442. ⟨10.1007/s00248-016-0774-0⟩ Article dans une revue hal-02916112v1
Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences Mathilde Jeanbille,Marc Buée,C. Bach,A. Cebron,P. Frey-Klettet al. Microbial ecology, 2016, 71 (2), pp.482-493. ⟨10.1007/s00248-015-0669-5⟩ Article dans une revue hal-01579572v1
Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites Bruce C. Thomson,Emilie Tisserant,Pierre Plassart,Stéphane Uroz,Rob I. Griffithset al. Soil Biology and Biochemistry, 2015, 88, pp.403-413. ⟨10.1016/j.soilbio.2015.06.012⟩ Article dans une revue hal-01269419v1
Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability Stephane Uroz,Phil Oger Genome Announcements, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩ Article dans une revue hal-02916120v1
The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities Stephane Uroz,Laura Catherine Kelly,Marie-Pierre M.-P. Turpault,Cendrella Lepleux,Pascale Frey-Klett Trends in Microbiology, 2015, 23 (12), pp.751 - 762. ⟨10.1016/j.tim.2015.10.004⟩ Article dans une revue hal-01577955v1
Highlights on progress in forest soil biology S. Uroz,A. Bispo,Marc Buée,A. Cebron,Jérôme Cortetet al. Revue forestière française, 2014, Hors série (2014), 8 p. ⟨10.4267/2042/56266⟩ Article dans une revue hal-01198683v1
Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay Vincent Hervé,Xavier Le Roux,Stéphane Uroz,Éric Gelhaye,Pascale Frey-Klett Environmental Microbiology, 2014, 16 (7), ⟨10.1111/1462-2920.12347⟩ Article dans une revue istex hal-01010621v1
Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase Stéphane Uroz,J. J. Tech,N. A. Sawaya,Pascale Frey-Klett,J. H. J. Leveau Soil Biology and Biochemistry, 2014, 69, pp.265-274. ⟨10.1016/j.soilbio.2013.11.002⟩ Article dans une revue istex hal-01268570v1
Les bactéries, des partenaires méconnus de la truffe Aurélie Deveau,Sanjay Antony-Babu,Christophe Robin,François F. Le Tacon,Stéphane S. Urozet al. Le Trufficulteur Français, 2014, 87 (2), pp.16 Article dans une revue hal-02639023v1
Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles. Sanjay Antony-Babu,Aurélie Deveau,Joy D. van Nostrand,Jizhong Zhou,François Le Taconet al. Environmental Microbiology, 2014, 16 (9), pp.2831-2847. ⟨10.1111/1462-2920.12294⟩ Article dans une revue hal-01270208v1
Aperçu des avancées dans le domaine de la biologie des sols forestiers Stéphane Uroz,Antonio Bispo,Marc Buée,Aurélie Noémie Candice Cebron,J. Cortetet al. Revue forestière française, 2014, LXVI (4), pp.467-478. ⟨10.4267/2042/56560⟩ Article dans une revue hal-02601314v1
Increase of apatite dissolution rate by Scots pine roots associated or not with Burkholderia glathei PML1(12)Rp in open-system flow microcosms Christophe Calvaruso,Marie-Pierre M.-P. Turpault,Pascale Frey-Klett,Stéphane Uroz,Marie-Claire Pierretet al. Geochimica et Cosmochimica Acta, 2013, 106, pp.287 - 306. ⟨10.1016/j.gca.2012.12.014⟩ Article dans une revue istex hal-01268141v1
An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards Sanjay Antony-Babu,Chloé Murat,Jean-Pierre Deveaux,François Le Tacon,Pascale Frey-Klettet al. Journal of Applied Microbiology, 2013, 115 (1), pp.163 - 170. ⟨10.1111/jam.12205⟩ Article dans une revue hal-01268072v1
Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum Stéphane S. Uroz,Pierre-Emmanuel Courty,J-Claude J.-C. Pierrat,M. M. Peter,Marc Buéeet al. Microbial ecology, 2013, 66 (2), pp.404 - 415. ⟨10.1007/s00248-013-0199-y⟩ Article dans une revue istex hal-01001500v1
Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation Stéphane Uroz,Panos Ioannidis,Juliette Lengelle,Aurélie Cébron,Emmanuelle Morinet al. PLoS ONE, 2013, 8 (2), ⟨10.1371/journal.pone.0055929⟩ Article dans une revue hal-01119698v1
Taxonomic and functional diversity of Streptomyces in a forest soil Cyril Bontemps,Maxime Toussaint,Pierre-Vincent Revol,Laurence Hotel,Mathilde Jeanbilleet al. FEMS Microbiology Letters, 2013, 342 (2), pp.157-167. ⟨10.1111/1574-6968.12126⟩ Article dans une revue hal-01655681v1
A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil Cendrella Lepleux,Stéphane Uroz,Christelle Collignon,Jean-Louis Churin,Marie-Pierre M.-P. Turpaultet al. Research in Microbiology, 2013, 164 (7), pp.729 - 739. ⟨10.1016/j.resmic.2013.03.022⟩ Article dans une revue istex hal-01268300v1
Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes Stephane Uroz,P. Oger,E. Morin,P. Frey-Klett Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩ Article dans une revue hal-02916135v1
Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes Stéphane Uroz,P. Oger,Emmanuelle Morin,P. Frey-Klett Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩ Article dans une revue hal-01268355v1
Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities Stéphane Uroz,Marie-Pierre M.-P. Turpault,Christine Delaruelle,Louis Mareschal,J-Claude Pierratet al. Geomicrobiology Journal, 2012, 29 (1), pp.88 - 98. ⟨10.1080/01490451.2010.523764⟩ Article dans une revue hal-01053135v1
Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils C. Lepleux,M. Turpault,Phil M. Oger,P. Frey-Klett,S. Uroz Applied and Environmental Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩ Article dans une revue hal-02122800v1
Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities Stephane Uroz,M. Turpault,C. Delaruelle,L. Mareschal,J.-C. Pierratet al. Geomicrobiology Journal, 2012, 29 (1), pp. 88-98. ⟨10.1080/01490451.2010.523764⟩ Article dans une revue hal-02916136v1
Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils C. Lepleux,M. Turpault,P. Oger,P. Frey-Klett,Stephane Uroz Applied and Environmental Microbiology, 2012, 78 (19), pp. 7114-7119. ⟨10.1128/AEM.00996-12⟩ Article dans une revue hal-02916134v1
Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering (vol 328, pg 145, 2010) Christophe C. Calvaruso,Marie-Pierre M.-P. Turpault,Stéphane S. Uroz,Elisabeth Leclerc,Antoine Kieset al. Plant and Soil, 2011, 346 (1-2), pp.401 - 401. ⟨10.1007/s11104-011-0915-7⟩ Article dans une revue hal-02643917v1
Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems Stéphane Uroz,Philippe M. Oger,Cendrella Lepleux,Christelle Collignon,Pascale P. Frey-Klettet al. Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩ Article dans une revue istex insu-00682028v1
Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis Angéla Cusano,Peter Burlinson,Aurélie Deveau,Patrice Vion,Stéphane Urozet al. Environmental Microbiology Reports, 2011, 3 (2), pp.203-210. ⟨10.1111/j.1758-2229.2010.00209.x⟩ Article dans une revue istex hal-02650375v1
De la diversité à la fonction des Sols peu anthropisés S. Uroz,R. Marmeisse,Marc Buée,Y. Dessaux,D. Faureet al. Biofutur, 2011, 319, pp.39-43 Article dans une revue hal-02958002v1
Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands C. Collignon,Stephane Uroz,M-P. Turpault,P. Frey-Klett Soil Biology and Biochemistry, 2011, 43 (10), pp.2012-2022. ⟨10.1016/j.soilbio.2011.05.008⟩ Article dans une revue istex hal-02916140v1
Linking diversity to function: highlight on the mineral weathering bacteria Stéphane S. Uroz,Pascale P. Frey-Klett Central European Journal of Biology, 2011, 6 (5), pp.817-820. ⟨10.2478/s11535-011-0053-5⟩ Article dans une revue hal-02644684v1
Diversity to the function of low soil anthropised Stéphane S. Uroz,Roland Marmeisse,Marc Buée,Yves Dessaux,Denis Faureet al. Biofutur, 2011, 319, pp.39 - 43 Article dans une revue hal-02642096v1
Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere Stephane Uroz,M.-P. Turpault,L. van Scholl,B. Palin,P. Frey-Klett Soil Biology and Biochemistry, 2011, 43 (11), pp.2275-2282. ⟨10.1016/j.soilbio.2011.07.010⟩ Article dans une revue istex hal-02916138v1
Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering Christophe C. Calvaruso,Marie-Pierre M.-P. Turpault,Stéphane Uroz,Elisabeth Leclerc,Antoine Kieset al. Plant and Soil, 2010, 328 (1-2), pp.145-154. ⟨10.1007/s11104-009-0092-0⟩ Article dans une revue istex hal-02658161v1
Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil Stéphane Uroz,Marc Buée,Claude Murat,Pascale P. Frey-Klett,Francis Martin Environmental Microbiology Reports, 2010, 2 (2), pp.281-288. ⟨10.1111/j.1758-2229.2009.00117.x⟩ Article dans une revue istex hal-02667042v1
The bacterial genus Collimonas Johan H. J. Leveau,Stéphane Uroz,Wietse de Boer Environmental Microbiology, 2010, 12 (2), pp.281-292. ⟨10.1111/j.1462-2920.2009.02010.x⟩ Article dans une revue hal-02658848v1
The role of ectomycorrhizal communities in forest ecosystem processes Pierre-Emmanuel Courty,Marc Buée,Abdala Gamby Diedhiou,Pascale P. Frey-Klett,François F. Le Taconet al. Soil Biology and Biochemistry, 2010, 42 (5), pp.679-698. ⟨10.1016/j.soilbio.2009.12.006⟩ Article dans une revue istex hal-02663834v1
Influence of forest trees on the distribution of mineral weathering-associated bacterial communities of the scleroderma citrinum mycorrhizosphere Christophe C. Calvaruso,Marie-Pierre M.-P. Turpault,Elisabeth Leclerc,Jacques J. Ranger,Jean J. Garbayeet al. Applied and Environmental Microbiology, 2010, 76 (14), pp.4780-4787. ⟨10.1128/AEM.03040-09⟩ Article dans une revue hal-02668615v1
Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: Budget analysis and bacterial quantification Nina Koele,Marie-Pierre M.-P. Turpault,Ernst E. Hildebrand,Stéphane Uroz,Pascale P. Frey-Klett Soil Biology and Biochemistry, 2009, 41 (9), pp.1935-1942. ⟨10.1016/j.soilbio.2009.06.017⟩ Article dans une revue istex hal-02657805v1
Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas Stéphane Uroz,Christophe C. Calvaruso,Marie-Pierre M.-P. Turpault,Alain A. Sarniguet,Wietse de Boeret al. Soil Biology and Biochemistry, 2009, 41 (10), pp.2178-2186. ⟨10.1016/j.soilbio.2009.07.031⟩ Article dans une revue istex hal-02659896v1
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity Marc Buée,Marlis Reich,Claude Murat,Emmanuelle Morin,R.H. Nilssonet al. New Phytologist, 2009, 184 (2), pp.449-456. ⟨10.1111/j.1469-8137.2009.03003.x⟩ Article dans une revue hal-02667034v1
Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication Stéphane Uroz,Yves Dessaux,Phil M. Oger ChemBioChem, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩ Article dans une revue (article de synthèse) istex hal-02122861v1
Mineral weathering by bacteria: ecology, actors and mechanisms Stéphane Uroz,Christophe Calvaruso,Marie-Pierre M.-P. Turpault,Pascale P. Frey-Klett Trends in Microbiology, 2009, 17 (8), pp.378-387. ⟨10.1016/j.tim.2009.05.004⟩ Article dans une revue istex hal-02659297v1
A Rhodococcus qsdA-Encoded Enzyme Defines a Novel Class of Large-Spectrum Quorum-Quenching Lactonases Stéphane S. Uroz,Phil M. Oger,Emilie Chapelle,Marie-Thérèse Adeline,Denis Faureet al. Applied and Environmental Microbiology, 2008, 74 (5), pp.1357-1366. ⟨10.1128/AEM.02014-07⟩ Article dans une revue hal-02665934v1
Degradation of N-acyl homoserine lactone quorum sensing signal molecules by forest root-associated fungi Stéphane Uroz,Jussi Heinonsalo FEMS Microbiology Ecology, 2008, 65 (2), pp.271-278. ⟨10.1111/j.1574-6941.2008.00477.x⟩ Article dans une revue hal-02656843v1
Simple microplate assays to measure iron mobilization and oxalate secretion by ectomycorrhizal tree roots François Rineau,Pierre-Emmanuel Courty,Stéphane Uroz,Marc Buée,Jean J. Garbaye Soil Biology and Biochemistry, 2008, 40 (9), pp.2460-2463. ⟨10.1016/j.soilbio.2008.03.012⟩ Article dans une revue istex hal-02661229v1
A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases. S. Uroz,Philippe M. Oger,E. Chapelle,M.-T. Adeline,D. Faureet al. Applied and Environmental Microbiology, 2008, 74, pp.1357-1366 Article dans une revue hal-00342712v1
Effet de la substitution d'essence sur le fonctionnement et la durabilité des écosystèmes forestiers : l'apport des travaux pluridisciplinaires menés en forêt de Breuil Chenue - Morvan Jacques J. Ranger,Dominique Gelhaye,Séverine Bienaime,M. Bonneau,Pascal Bonnaudet al. Bourgogne Nature, 2007, pp.45-68 Article dans une revue hal-02664164v1
Effect of the Mycorrhizosphere on the Genotypic and Metabolic Diversity of the Bacterial Communities Involved in Mineral Weathering in a Forest Soil Stéphane Uroz,Christophe Calvaruso,Marie-Pierre M.-P. Turpault,J-Claude Pierrat,C Mustinet al. Applied and Environmental Microbiology, 2007, 73 (9), pp.3019-3027. ⟨10.1128/AEM.00121-07⟩ Article dans une revue hal-01195006v1
N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1. Stéphane Uroz,Yves Dessaux,Philippe M. Oger,Siri Ram Chhabra,Miguel Cámaraet al. Archives of Microbiology, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩ Article dans une revue istex hal-00119105v1
N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities. Stéphane Uroz,Siri Ram Chhabra,Miguel Cámara,Paul Williams,Philippe M. Ogeret al. Microbiology, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩ Article dans une revue hal-00019097v1
N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings. Laurie Delalande,Denis Faure,Aurélie Raffoux,Stéphane Uroz,Cathy d'Angelo-Picardet al. FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩ Article dans une revue istex hal-00019093v1
Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone. Cathy d'Angelo-Picard,Denis Faure,Aurélien Carlier,Stéphane Uroz,Aurélie Raffouxet al. FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩ Article dans une revue istex hal-00122912v1
Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria. Stéphane Uroz,Cathy d'Angelo-Picard,Aurélien Carlier,Miena Elasri,Carine Sicotet al. Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩ Article dans une revue hal-00135468v1
The Ti Plasmid of Agrobacterium tumefaciens Harbors an attM-Paralogous Gene, aiiB, Also Encoding N-Acyl Homoserine Lactonase Activity A. Carlier,Stephane Uroz,B. Smadja,R. Fray,X. Latouret al. Applied and Environmental Microbiology, 2003, 69 (8), pp.4989-4993. ⟨10.1128/AEM.69.8.4989-4993.2003⟩ Article dans une revue hal-02921665v1

Chapitre d'ouvrage (6)

High-Throughput Screening of Fosmid Libraries for Increased Identification of Novel N-Acyl Homoserine Lactone Degrading Enzymes Stéphane Uroz,Phil M. Oger Microbial Environmental Genomics (MEG), 2605, Springer US, pp.227-240, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_12⟩ Chapitre d'ouvrage hal-04683698v1
Precipitation partitioning - Hydrologic highways between microbial communities of the plant microbiome? John Tolan van Stan,Cindy E. Morris,K Aung,Y Kuzyakov,D Magyaret al. van Stan John Toland; Gutmann Ethan; Friesen Jan. Precipitation partitioning by vegetation, Springer Nature, pp.229-252, 2020, 978-3-030-29701-5. ⟨10.1007/978-3-030-29702-2_14⟩ Chapitre d'ouvrage hal-02389738v1
Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples Laure Fauchery,Stéphane Uroz,Marc Buée,Annegret Kohler Fungal Genomics, 1775 (Chapter 3), Humana Press, New York, NY, 2018, Methods in Molecular Biology, 978-1-4939-7803-8. ⟨10.1007/978-1-4939-7804-5_3⟩ Chapitre d'ouvrage hal-01891732v1
Screening for N-AHSL-Based-Signaling Interfering Enzymes Stéphane Uroz,Phil M. Oger METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩ Chapitre d'ouvrage hal-01688921v1
Preface Francis Martin,Stéphane S. Uroz Microbial Environmental Genomics (MEG), 1399, Editions Springer, 321 p., 2016, Methods in Molecular Biology, 978-1-4939-3369-3 978-1-4939-3367-9 Chapitre d'ouvrage hal-02792541v1
Screening for N-AHSL-Based-Signaling Interfering Enzymes Stéphane Uroz,Phil M. Oger Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010 Chapitre d'ouvrage hal-02122828v1

Communication dans un congrès (11)

Impact of soil chemistry, nutrient supplements, and fungicides on the health and yield of field-grown processing tomatoes Nilesh N. Maharaj,Eugene M. Miyao,R. Michael Davis,Stéphane Uroz,Johan H. J. Leveau oint Conference of the 12th Conference of the European-Foundation-for-Plant-Pathology (EFPP), European foundation for plant pathology.; French Society for Phytopathology., May 2017, Dordrecht, France. pp.14, ⟨10.1007/s10658-018-1572-y⟩ Communication dans un congrès hal-02736999v1
Black truffles as a model in microbial ecology to analyse fungal-bacterial interactions Aurélie Deveau,Richard Splivallo,Béatrice Palin,Océane Nicolitch,Annegret Kohleret al. 16th International Symposium on Microbial Ecology, Aug 2016, Montreal, Canada Communication dans un congrès hal-02948271v1
Impact of nutrient availability on the diversity, function and functioning of the forest soil bacterial communities: insights from the soil succession of the forest experimental site of Montiers. Stephane Uroz,Marie-Pierre M.-P. Turpault,Océane Nicolitch,Yannick Colin,Marc Buéeet al. Labex ARBRE conference, Oct 2016, Champenoux, France Communication dans un congrès hal-03339707v1
Effect of soil type on the beech fine root distribution Marie-Pierre M.-P. Turpault,Christophe Calvaruso,Stéphane Uroz,Paul Olivier Redon,Gil Kirchen Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands Communication dans un congrès hal-01269130v1
Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils Stéphane S. Uroz,Marc Buée,Aurélie Cébron,Wietse de Boer,Pascale P. Frey-Klettet al. MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France Communication dans un congrès hal-02796164v1
Characterisation of Active Forest Soil Bacteria during Mineral Weathering L-C. Kelly,Stéphane Uroz,Marie-Pierre M.-P. Turpault Goldschmidt, Aug 2013, Florence, Italy Communication dans un congrès hal-01269132v1
Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil Cendrella Lepleux,Marie-Pierre M.-P. Turpault,P. Oger,Pascale P. Frey-Klett,Stéphane S. Uroz 14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark Communication dans un congrès hal-02745200v1
Taxonomic and functional diversity of Streptomyces in a forest soil Cyril Bontemps,Laurence Hotel,Pierre-Vincent Revol,Mathilde Jeanbille,Stéphane Urozet al. Journées Actinomycètes, 2012, Nancy, France Communication dans un congrès hal-01269133v1
Life as the catalyst of mineral weathering in acidic forest ecosystem Marie-Pierre M.-P. Turpault,Stéphane S. Uroz,Christophe C. Calvaruso,Christelle Collignon,Louis Mareschalet al. Goldschmidt 2011, Aug 2011, Prague, Czech Republic Communication dans un congrès hal-02744525v1
Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers Stéphane S. Uroz,Marie-Pierre M.-P. Turpault,P. Oger,Christelle Collignon,Wietse de Boeret al. Colloque FRB 2011, Sep 2011, Montpellier, France Communication dans un congrès hal-02744770v1
Metagenomics of the forest soil microbiome: from diversity to function Stéphane S. Uroz,Marc Buée,Francis Martin,Aurore Coince,Claude Muratet al. 1. EcoFINDERS WP3 workshop : 'Strategies and tools for sampling, DNA extraction, DNA sequencing and bioinformatics, 2011, Nancy, France Communication dans un congrès hal-02804475v1

Poster de conférence (11)

Optimisation des méthodes de purification de l’ADN fongique de haute qualité pour le séquençage Laure Fauchery,Igor V. Grigoriev,Stéphane Uroz,Marc Buée,Annegret Kohleret al. IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Bussang, Nov 2019, Bussang, France Poster de conférence hal-03340857v1
Exploration de la diversité des bactéries marines dégradant les macroalgues par marquage isotopique François Thomas,Nolwen Le Duff,Pascal Riera,Aurélie Cébron,Cédric Lerouxet al. IXème colloque AFEM, Nov 2019, Bussang, France Poster de conférence hal-03145502v1
Coopération entre des bactéries solubilisatrices de phosphate et le champignon mycorhizien à arbuscule Rhizophagus irregularis dans la nutrition phosphatée de la pomme de terre Antoine Sportes,Raphael Boussageon,Diederik van Tuinen,Daniel Wipf,Claude Plassartet al. IX. Colloque de l'Association Francophone d'Ecologie Microbienne, AFEM 2019, Fonctions et diversité des microbiotes dans les environnements naturels et anthropisés, Nov 2019, Bussang, France. , 2019 Poster de conférence hal-02737605v1
Molecular mechanisms involved in mineral weathering ability of Collimonas sp. PMB3.1 isolated from the oak-Scleroderma citrinum mycorrhizosphere Laura Picard,Marie-Pierre M.-P. Turpault,Philippe Oger,Stéphane Uroz IXe Colloque de l’Association Francophone d’Ecologie Microbienne (AFEM2019), Nov 2019, Bussang (Vosges), France Poster de conférence hal-04887168v1
Diversité taxonomique et fonctionnelle des communautés bactériennes colonisant le duramen et l’aubier du chêne sessile (Quercus petraea) en decomposition Sophie Mieszkin,Perrine Richet,Catherine Lambrot,Cyrille Bach,Laurent Augustoet al. IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Nov 2019, Bussang, France Poster de conférence hal-03340841v1
L'aubier et le duramen de chêne sélectionnent des communautés bactériennes taxonomiquement et fonctionnellement différentes au cours de leur décomposition Sophie Mieszkin,P. Richet,Cyrille Bach,Catherine Lambrot,Laurent Augustoet al. IXe Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Nov 2019, Bussang, France Poster de conférence hal-03194922v1
Forest tree species shape their soil microbiome Stéphane S. Uroz,Phil Oger,Emilie Tisserand,Aurélie Cébron,Marie-Pierre M.-P. Turpaultet al. Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands. 2015 Poster de conférence hal-02800245v1
Impact of soil type on the structure of the microbial communities: Insights from the Montiers-sur-Saulx soil succession Océane Nicolitch-Café,Mathilde Jeanbille,Marc Buée,Yannick Colin,Marie-Pierre M.-P. Turpaultet al. 1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014 Poster de conférence hal-02792897v1
Forest tree species shape their soil microbiome Stéphane S. Uroz,Phil Oger,Emilie Tisserand,Aurélie Cébron,Marie-Pierre M.-P. Turpaultet al. 1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014 Poster de conférence hal-02796803v1
Caractérisation taxonomique et fonctionnelle des communautés bactériennes associées à la surface des minéraux : Combinaison d’approches non-cultivable et cultivable Cendrella Lepleux,Stéphane S. Uroz,Marie-Pierre M.-P. Turpault,P. Oger,Pascale P. Frey-Klett Congrès Ecole Thématique Expert Génomique Environnementale (ETEGE), 2012, Aussois, France. 2012 Poster de conférence hal-02805606v1
Taxonomic and functional characterization of the mineral associated bacterial communities in forest soil Cendrella Lepleux,Stéphane S. Uroz,Marie-Pierre M.-P. Turpault,Pascale P. Frey-Klett Ecology of soil microorganisms: Microbes as important drivers of the soil processes, Apr 2011, Prague, Czech Republic. 2011 Poster de conférence hal-02804405v1

Autre publication scientifique (1)

Le charme discret... de la racine Stéphane Uroz,Aurélie Deveau,Francis Martin,Aurélie Cébron 2018, pp.Hors série n°101 Autre publication scientifique hal-03219046v1