Stéphanie BAUD

Publications

Article dans une revue (43)

Binding of the elastin peptide VGVAPG and lactose to the human elastin binding protein Zeynep Pinar Haslak,Nicolas Belloy,Laurent Debelle,Manuel Dauchez,Stéphanie Baud Journal of Structural Biology, 2026, 218, ⟨10.1016/j.jsb.2026.108318⟩ Article dans une revue hal-05572475v1
Exploring the potential of combining menthol-thymol deep eutectic solvent and solid microneedles for cutaneous peptide delivery Shabir Ahmad,Grzegorz S Czyrski,Christian Janfelt,Stéphanie Baud,Massimo Frestaet al. European Journal of Pharmaceutical Sciences, 2025, 215, pp.107336. ⟨10.1016/j.ejps.2025.107336⟩ Article dans une revue hal-05546116v1
In Silico Prediction of Tetrastatin-Derived Peptide Interactions with αvβ3 and α5β1 Integrins Vivien Paturel,Stéphanie Baud,Christophe Schneider,Sylvie Brassart-Pasco Pharmaceuticals, 2025, 18 (7), pp.940. ⟨10.3390/ph18070940⟩ Article dans une revue hal-05176395v1
In Silico Structural Modeling and Analysis of Physicochemical Properties of Antitumoral QS‐13 Peptide and Its Derivatives in Water and Dimethyl Sulfoxide Vivien Paturel,Stéphanie Baud,Christophe Schneider,Sylvie Brassart‐pasco Peptide Science, 2024, 116 (5), pp.e24352. ⟨10.1002/pep2.24352⟩ Article dans une revue hal-04746194v1
SGPocket: A New Graph Convolutional Neural Network for Ligand-protein Binding Site Prediction Kevin Crampon,Cedric Bourrasset,Stephanie Baud,Luiz Angelo Steffenel Current Medicinal Chemistry, 2024, 31, ⟨10.2174/0109298673289137240304165758⟩ Article dans une revue hal-04676299v1
Structural and physical basis for the elasticity of elastin Camille Depenveiller,Stéphanie Baud,N. Belloy,Brigida Bochicchio,Jany Dandurandet al. Quarterly Reviews of Biophysics, 2024, ⟨10.1017/S0033583524000040⟩ Article dans une revue hal-04549268v1
Heterogeneous graph convolutional neural network for protein-ligand scoring Kevin Crampon,Alexis Giorkallos,Xavier Vigouroux,Stephanie Baud,Luiz Angelo Steffenel Exploration of Drug Science, 2023, pp.126-139. ⟨10.37349/eds.2023.00010⟩ Article dans une revue hal-04085907v1
La valorisation des écorces d’essences champardennaises pour la cosmétique et la pharmacie. Pierre Darme,Jérémy Spalenka,Julien Cordonnier,Simon Remy,Sandie Escotte-Binetet al. L'Actualité Chimique, 2023, 484-485, pp.53-61 Article dans une revue hal-04184375v1
Early Alterations of Intra-Mural Elastic Lamellae Revealed by Synchrotron X-ray Micro-CT Exploration of Diabetic Aortas Aïcha Ben Zemzem,Xiaowen Liang,Laetitia Vanalderwiert,Camille Bour,Béatrice Romier-Crouzetet al. International Journal of Molecular Sciences, 2022, 23 (6), pp.3250. ⟨10.3390/ijms23063250⟩ Article dans une revue hal-03615968v1
Anti-Toxoplasma gondii effect of lupane-type triterpenes from the bark of black alder (Alnus glutinosa) and identification of a potential target by reverse docking Pierre Darme,Sandie Escotte-Binet,Julien Cordonnier,Simon Remy,Jane Hubertet al. Parasite, 2022, 29, pp.7. ⟨10.1051/parasite/2022008⟩ Article dans une revue hal-03565091v1
Machine-learning methods for ligand–protein molecular docking Kevin Crampon,Alexis Giorkallos,Myrtille Deldossi,Stéphanie Baud,Luiz Angelo Steffenel Drug Discovery Today, 2022, ⟨10.1016/j.drudis.2021.09.007⟩ Article dans une revue hal-03352012v2
AMIDE v2: High-Throughput Screening Based on AutoDock-GPU and Improved Workflow Leading to Better Performance and Reliability Pierre Darme,Manuel Dauchez,Arnaud Renard,Laurence Voutquenne-Nazabadioko,Dominique Aubertet al. International Journal of Molecular Sciences, 2021, 22, ⟨10.3390/ijms22147489⟩ Article dans une revue hal-03287272v1
Multiscale modelling of the extracellular matrix Hua Wong,Jean-Marc Crowet,Manuel Dauchez,Sylvie Ricard-Blum,Stéphanie Baudet al. Matrix Biology Plus, 2021, 13, pp.100096. ⟨10.1016/j.mbplus.2021.100096⟩ Article dans une revue hal-03507342v2
A Fully Automatic and Efficient Methodology for Peptide Activity Identification Using Their 3D Conformations Azzam Alwan,Rémi Cogranne,Pierre Beauseroy,Edith Grall-Maës,Nicolas Belloyet al. IEEE Access, 2021, 9, pp.92143 - 92156. ⟨10.1109/access.2021.3091939⟩ Article dans une revue hal-03311364v1
Effects of changes in glycan composition on glycoprotein dynamics: example of N -glycans on insulin receptor Rajas M Rao,Hua Wong,Manuel Dauchez,Stéphanie Baud Glycobiology, 2021, ⟨10.1093/glycob/cwab049⟩ Article dans une revue hal-03542037v1
Differential MMP-14 Targeting by Lumican-Derived Peptides Unraveled by In Silico Approach Jonathan Dauvé,Nicolas Belloy,Romain Rivet,Nicolas Etique,Pierre Nizetet al. Cancers, 2021, 13 (19), pp.4930. ⟨10.3390/cancers13194930⟩ Article dans une revue hal-03377128v1
AG-9, an Elastin-Derived Peptide, Increases In Vitro Oral Tongue Carcinoma Cell Invasion, through an Increase in MMP-2 Secretion and MT1-MMP Expression, in a RPSA-Dependent Manner Clara Bretaudeau,Stéphanie Baud,Aurélie Dupont-Deshorgue,Rémi Cousin,Bertrand Brassartet al. Biomolecules, 2021, 11 (1), pp.39. ⟨10.3390/biom11010039⟩ Article dans une revue hal-03370553v1
Structural Analysis of Nonapeptides Derived from Elastin Belén Hernández,Jean‐marc Crowet,Joseph Thiery,Sergei Kruglik,N. Belloyet al. Biophysical Journal, 2020, 118 (11), pp.2755-2768. ⟨10.1016/j.bpj.2020.04.019⟩ Article dans une revue hal-02749709v1
Angiogenesis Inhibition by a Short 13 Amino Acid Peptide Sequence of Tetrastatin, the α4(IV) NC1 Domain of Collagen IV Alexia Vautrin-Glabik,Jérôme Devy,Camille Bour,Stéphanie Baud,Laurence Choulieret al. Frontiers in Cell and Developmental Biology, 2020, 8, ⟨10.3389/fcell.2020.00775⟩ Article dans une revue hal-03010053v1
Transmembrane Peptides as a New Strategy to Inhibit Neuraminidase-1 Activation Camille Albrecht,Andrey S Kuznetsov,Aline Appert-Collin,Zineb Dhaideh,Maïté Callewaertet al. Frontiers in Cell and Developmental Biology, 2020, ⟨10.3389/fcell.2020.611121⟩ Article dans une revue hal-03357996v1
Umbrella Visualization: a method of analysis dedicated to glycan flexibility with UnityMol. Camille Besancon,Alexandre Guillot,Sébastien Blaise,Manuel Dauchez,Nicolas Belloyet al. Methods, 2019, ⟨10.1016/j.ymeth.2019.07.010⟩ Article dans une revue hal-02190172v1
Small leucine-rich proteoglycans and matrix metalloproteinase-14 Katarzyna Pietraszek-Gremplewicz,Konstantina Karamanou,Aïchata Niang,Manuel Dauchez,N. Belloyet al. Matrix biology : journal of the International Society for Matrix Biology, 2019, 75-76, pp.271-285 Article dans une revue hal-03370790v1
Small leucine-rich proteoglycans and matrix metalloproteinase-14: Key partners? Katarzyna Pietraszek-Gremplewicz,Konstantina Karamanou,Aïchata Niang,Manuel Dauchez,Nicolas Belloyet al. Matrix Biology, 2019, 75-76, pp.271-285. ⟨10.1016/j.matbio.2017.12.006⟩ Article dans une revue hal-03601176v1
Mesoscopic Rigid Body Modelling of the Extracellular Matrix Self-Assembly Hua Wong,Jessica Prevoteau-Jonquet,Stéphanie Baud,Manuel Dauchez,N. Belloy Journal of Integrative Bioinformatics, 2018, ⟨10.1515/jib-2018-0009⟩ Article dans une revue hal-01821593v1
Conformation-dependent binding of a Tetrastatin peptide to αvβ3 integrin decreases melanoma progression through FAK/PI3K/Akt pathway inhibition Eléonore Lambert,Eloïse Fuselier,Laurent Ramont,Bertrand Brassart,Sylvain Dukicet al. Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-28003-x⟩ Article dans une revue hal-02310422v1
Proteoglycan Chemical Diversity Drives Multifunctional Cell Regulation and Therapeutics Nikos Karamanos,Zoi Piperigkou,Achilleas Theocharis,Hideto Watanabe,Marco Franchiet al. Chemical Reviews, 2018, 118 (18), pp.9152-9232. ⟨10.1021/acs.chemrev.8b00354⟩ Article dans une revue hal-02386784v1
Impact of sialic acids on the molecular dynamic of bi-antennary and tri-antennary glycans Alexandre Guillot,Manuel Dauchez,Nicolas Belloy,Jessica Jonquet,Laurent Ducaet al. Scientific Reports, 2016, 6 (1), ⟨10.1038/srep35666⟩ Article dans une revue hal-02347497v1
New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability Pascal Maurice,Stéphanie Baud,Olga V Bocharova,Eduard V Bocharov,Andrey V. Kuznetsovet al. Scientific Reports, 2016, 6 (1), ⟨10.1038/srep38363⟩ Article dans une revue hal-02347486v1
Tuning self-assembly in elastin-derived peptides Brigida Bochicchio,Antonietta Pepe,Maria Crudele,N. Belloy,Stéphanie Baudet al. Soft Matter, 2015, 11 (17), pp.3385 - 3395. ⟨10.1039/C5SM00072F⟩ Article dans une revue hal-01692948v1
Inverse docking method for new proteins targets identification: A parallel approach Romain Vasseur,Stéphanie Baud,Luiz Angelo Steffenel,Xavier Vigouroux,Laurent Martinyet al. Parallel Computing, 2015, 42, pp.48 - 59. ⟨10.1016/j.parco.2014.09.008⟩ Article dans une revue hal-01709658v1
Plasmin releases the anti-tumor peptide from the NC1 domain of collagen XIX Jean-Baptiste Oudart,Sylvie Brassart-Pasco,Alexia Vautrin,Christèle Sellier,Carine Machadoet al. Oncotarget, 2015, 6 (6), pp.3656-3668. ⟨10.18632/oncotarget.2849⟩ Article dans une revue hal-03541824v1
AMIDE -Automatic Molecular Inverse Docking Engine for Large-Scale Protein Targets Identification R Vasseur,S. Baud,Luiz Angelo Steffenel,X Vigouroux,L. Martinyet al. International Journal On Advances in Life Sciences, 2014, 6 (3-4), pp.325-337 Article dans une revue hal-02560920v1
Molecular-level characterization of elastin-like constructs and human aortic elastin Andrea Heinz,Christoph Schräder,Stéphanie Baud,Fred Keeley,Suzanne Mithieuxet al. Matrix Biology, 2014, 38, pp.12-21. ⟨10.1016/j.matbio.2014.07.006⟩ Article dans une revue hal-03541820v1
Amyloidogenesis of proteolytic fragments of human elastin Brigida Bochicchio,Antonietta Pepe,Florian Delaunay,Marina Lorusso,Stéphanie Baudet al. RSC Advances, 2013, vol. 3 (n° 32), pp. 13273-13285. ⟨10.1039/c3ra41893f⟩ Article dans une revue hal-01166361v1
Interaction between the elastin peptide VGVAPG and human elastin binding protein. Charlotte Blanchevoye,Nicolas Floquet,Amandine Scandolera,Stéphanie Baud,Pascal Mauriceet al. Journal of Biological Chemistry, 2013, 288 (2), pp.1317-1328. ⟨10.1074/jbc.M112.419929⟩ Article dans une revue hal-01109325v1
Interaction between the Elastin Peptide VGVAPG and Human Elastin Binding Protein Charlotte Blanchevoye,Nicolas Floquet,Amandine Scandolera,Stéphanie Baud,Pascal Mauriceet al. Journal of Biological Chemistry, 2013, 288 (2), pp.1317-1328. ⟨10.1074/jbc.M112.419929⟩ Article dans une revue hal-02347668v1
Elastin-Derived Peptides Are New Regulators of Insulin Resistance Development in Mice Sébastien Blaise,Béatrice Romier,Charlotte Kawecki,Maxime Ghirardi,Fanja Rabenoelinaet al. Diabetes, 2013, ⟨10.2337/db13-0508⟩ Article dans une revue hal-02347628v1
Elastin peptides in aging and pathological conditions Stéphanie Baud,Laurent Duca,Brigida Bochicchio,Bertrand Brassart,N. Belloyet al. Biomolecular concepts, 2013, 4 (1), ⟨10.1515/bmc-2011-0062⟩ Article dans une revue hal-01692943v1
Binding of inositol stereoisomers to model amyloidogenic peptides. Li G.,S. Rauscher,S. Baud,R. Pomès Journal of Physical Chemistry B, 2012, 116 (3), pp.1111-1119 Article dans une revue hal-00678971v1
Molecular mechanism of β-sheet self-organization at water-hydrophobic interfaces. A. Nikolic,S. Baud,S. Rauscher,R. Pomès Proteins - Structure, Function and Bioinformatics, 2011, 79 (1), pp.1-22 Article dans une revue hal-00678973v1
Molecular Basis for the Catalysis of B-Sheet Formation by Water-Nonpolar Interfaces Ana Nikolic,Stéphanie Baud,Sarah Rauscher,Régis Pomès Biophysical Journal, 2010, 98 (3), pp.252a. ⟨10.1016/j.bpj.2009.12.1368⟩ Article dans une revue hal-03541827v1
Proline and Glycine Control Protein Self-Organization into Elastomeric or Amyloid Fibrils Sarah Rauscher,Stéphanie Baud,Ming Miao,Fred w. Keeley,Régis Pomès Structure, 2006, 14 (11), pp.1667-1676. ⟨10.1016/j.str.2006.09.008⟩ Article dans une revue hal-03541833v1
Atomic diffusion inside a STM junction: simulations by kinetic Monte Carlo coupled to tunneling current calculations Stéphanie Baud,Xavier Bouju,Christophe Ramseyer,Hao Tang Surface Science : A Journal Devoted to the Physics and Chemistry of Interfaces, 2003, 523 (3), pp.267-278. ⟨10.1016/S0039-6028(02)02439-1⟩ Article dans une revue istex hal-03541867v1

Poster de conférence (3)

Evaluation and modelling of vascular microstructures evolution during normal and pathological aging using synchrotron X-ray three-dimensional microtomography Alexandra Fontaine,Xiaowen Liang,Dênnis José da Silva,Aïcha Ben Zemzem,Laetitia Vanalderwiertet al. Congrès de la section 28 "Pharmacologie, Ingénierie et technologie pour la santé, Imagerie biomédicale" du Comité National de la Recherche Scientifique, 2025, Reims, France Poster de conférence hal-05114988v1
HGScore: Heterogeneous Graph Convolutional Neural Network to predict protein-ligand complex affinity Kevin Crampon,Alexis Giorkallos,Xavier Vigouroux,Stephanie Baud,Luiz Angelo Steffenel Journée ROMEO, Jun 2023, Reims, France. pp.126-139, 2023, ⟨10.37349/eds.2023.00010⟩ Poster de conférence hal-04676508v1
How to speed up drug research? Kévin Crampon,Alexis Giorkallos,Stéphanie Baud,Luiz Angelo Steffenel Journée des Doctorants ED-SNI, Nov 2021, Reims, France Poster de conférence hal-04676517v1

Brevet (1)

Peptide Inhibitors of Cathepsin D/LRP-1 Interaction Nicolas Etique,Stéphane Dedieu,Tesnim Al Khalifa,Stéphanie Baud,Bruno Kieffer France, Patent n° : WO 2024/175592 A1. 2024 Brevet hal-04764925v1

Communication dans un congrès (10)

Exploring damaged elastic arteries by Synchrotron X-ray Micro-CT Xiaowen Liang,Aïcha Ben Zemzem,Laetitia Vanalderwiert,Béatrice Romier-Crouzet,Sébastien Blaiseet al. Congrès de la Société Française de Biomécanique, 2023, Grenoble, France. pp.S30-S32, ⟨10.1080/10255842.2023.2246304⟩ Communication dans un congrès hal-04147878v1
HGScore: artificial intelligence for structure-based molecular docking scoring Kevin Crampon,Alexis Giorkallos,Xavier Vigouroux,Stéphanie Baud,Luiz Angelo Steffenel GGMM 2023 - Young Modellers Conference, CECAM, May 2023, Toulouse, France Communication dans un congrès hal-04676371v1
SGPocket: Predict protein-ligand binding site using graph convolutional neural network Kévin Crampon,Xavier Vigouroux,Stéphanie Baud,Luiz Angelo Steffenel CompBioMed Conference (CBMC 2023), Centre of Excellence in Computational Biomedicine (CompBioMed), Sep 2023, Munich (Allemagne), Germany Communication dans un congrès hal-04676355v1
Scalabilité de l'entraînement d'un réseau de convolution de graphes pour l'amarrage moléculaire Kévin Crampon,Alexis Giorkallos,Stéphanie Baud,Luiz Angelo Steffenel Conférence d’informatique en Parallélisme, Architecture et Système (ComPAS'22), Jul 2022, Amiens, France Communication dans un congrès hal-04676443v1
13th EBSA congress, July 24–28, 2021, Vienna, Austria Rajas Mallenahalli Rao,Marc Guéroult,Nicolas Belloy,Jean‐marc Crowet,Stéphane Brézillonet al. 13th EBSA congress, Jul 2021, Vienne, Austria. pp.159, ⟨10.1007/s00249-021-01558-w⟩ Communication dans un congrès hal-03541830v1
Improved Umbrella Visualization implemented in UnityMol gives valuable insight on sugar/protein interplay C Besançon,H. Wong,R. Rao,M. Dauchez,N. Belloyet al. Workshop on Molecular Graphics and Visual Analysis of Molecular Data (MolVA) (2020), May 2020, Norrköping, Sweden. ⟨10.2312/molva.20201097⟩ Communication dans un congrès hal-02749938v1
New visualization of dynamical flexibility of N-Glycans: Umbrella Visualization in UnityMol. Camille Besancon,Alexandre Guillot,Sébastien Blaise,Manuel Dauchez,Nicolas Belloyet al. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Dec 2018, Madrid, Spain. pp.291-298 Communication dans un congrès hal-02160102v1
An efficient statistical methodology for peptide 3D structure clustering Azzam Alwan,Rémi Cogranne,Pierre Beauseroy,Edith Grall-Maës,Laurent Debelleet al. 2018 IEEE 4th Middle East Conference on Biomedical Engineering (MECBME), Mar 2018, Tunis, Tunisia. pp.78-83, ⟨10.1109/MECBME.2018.8402410⟩ Communication dans un congrès hal-02056766v1
A Framework for Inverse Virtual Screening Large-Scale Protein Targets Identification Romain Vasseur,Stéphanie Baud,Luiz Angelo Steffenel,Xavier Vigouroux,Laurent Martinyet al. 6th International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (BIOTECHNO 2014), IARIA, Apr 2014, Chamonix, France Communication dans un congrès hal-02560915v1
Parallel strategies for an inverse docking method Romain Vasseur,Stéphanie Baud,Luiz Angelo Steffenel,Xavier Vigouroux,Laurent Martinyet al. the 20th European MPI Users' Group Meeting, Sep 2013, Madrid, France. ⟨10.1145/2488551.2488584⟩ Communication dans un congrès hal-01709088v1

Chapitre d'ouvrage (1)

Early alterations of diabetic mouse aortas revealed by X-ray micro-CT Aïcha Ben Zemzem,Xiaowen Liang,Laetitia Vanalderwiert,Camille Bour,Béatrice Romier-Crouzetet al. Synchrotron SOLEIL Highlights 2022, , pp.18-19, 2023 Chapitre d'ouvrage hal-04165366v1

Thèse (1)

Croissance de nanofils métalliques en présence d'une pointe et étude des propriétés physiques associées Stéphanie Baud Physique [physics]. Université de Franche-Comté, 2005. Français. ⟨NNT : ⟩ Thèse tel-00010835v1