stephanie bocs

Identifiants chercheurs

IdHAL :

stephanie-bocs

ORCID :

0000-0001-7850-4426

IdRef :

089427181

VIAF :

204855445

ISNI :

0000000431785381

Présentation

Publications

Article dans une revue (30)

A Super-Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution Gaetan Droc,Delphine Giraud,Caroline Belser,Karine Labadie,Simone Dupratet al. Plant Biotechnology Journal, In press, pp.1-23. ⟨10.1111/pbi.70553⟩ Article dans une revue hal-05247455v1
Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes Delphine Giraud,Nathalie Choisne,Marilyne Summo,Stéphanie Sidibe-Bocs,Héléna Vassilieffet al. BMC Genomic Data, 2025, 26, pp.30. ⟨10.1186/s12863-025-01321-6⟩ Article dans une revue hal-05041052v1
Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin Lison Zunino,Philippe Cubry,Gautier Sarah,Pierre Mournet,Ahmed El Bakkaliet al. PLoS ONE, 2024, 19, pp.e0295043. ⟨10.1371/journal.pone.0295043⟩ Article dans une revue hal-04519623v1
Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple Amy E. Watson,Baptiste Guitton,Alexandre Soriano,Ronan Rivallan,Hélène Vigneset al. Frontiers in Plant Science, 2024, 15, pp.1352757. ⟨10.3389/fpls.2024.1352757⟩ Article dans une revue hal-04519907v1
A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly Quentin Piet,Gaetan Droc,William Marande,Gautier Sarah,Stéphanie Bocset al. Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩ Article dans une revue hal-03678239v1
Genomic screening for tolerance of coconut populations differentially exposed to coconut's lethal yellowing in Ghana using genotyping by sequencing Andrea Garavito Guyot,Ronan Rivallan,Stéphanie Bocs,Luc Baudouin,Egya Ndede Yankey Phytopathogenic Mollicutes, 2022, 12 (1), pp.70. ⟨10.5958/2249-4677.2022.00035.4⟩ Article dans une revue hal-05179404v1
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees Jean-François Dufayard,Stéphanie Bocs,Valentin Guignon,Delphine Larivière,Alexandra Louiset al. NAR Genomics and Bioinformatics, 2021, 3 (3), 6 p. ⟨10.1093/nargab/lqab088⟩ Article dans une revue hal-03541670v1
Three founding ancestral genomes involved in the origin of sugarcane Nicolas Pompidor,Carine Charron,Catherine Hervouet,Stéphanie Bocs,Gaëtan Drocet al. Annals of Botany, 2021, 127 (6), pp.827-840. ⟨10.1093/aob/mcab008⟩ Article dans une revue hal-03273957v1
Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance Yaodong Yang,Stéphanie Bocs,Haikuo Fan,Alix Armero,Luc Baudouinet al. Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-020-01593-x⟩ Article dans une revue hal-03161818v1
Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis Shuangyang Wu,Romain Guyot,Stéphanie Bocs,Gaëtan Droc,Fetrina Oktaviaet al. International Journal of Molecular Sciences, 2020, 21 (12), pp.4220. ⟨10.3390/ijms21124220⟩ Article dans une revue hal-02923368v1
Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers Maider Astorkia,Monica Hernandez,Stéphanie Bocs,Kevin Ponce,Olga Leonet al. Euphytica, 2020, 216 (1), pp.1-16. ⟨10.1007/s10681-019-2538-7⟩ Article dans une revue hal-02623528v1
Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses Lauriane Hennet,Angélique Berger,Noemi Trabanco,Emeline Ricciuti,Jean-François Dufayardet al. Frontiers in Plant Science, 2020, 11, 19 p. ⟨10.3389/fpls.2020.00224⟩ Article dans une revue hal-02542105v1
Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq Maider Astorkia,Monica Hernandez,Stéphanie Bocs,Kevin Ponce,Olga Leonet al. Plant Science, 2020, 291, pp.1-13. ⟨10.1016/j.plantsci.2019.110366⟩ Article dans une revue hal-02623158v1
Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids Maider Astorkia,Monica Hernandez,Stéphanie Bocs,Emma Lopez de Armentia,Ana Herránet al. Plants, 2019, 8 (10), pp.1-19. ⟨10.3390/plants8100377⟩ Article dans une revue hal-02620626v1
Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii) Julia Soewarto,Chantal Hamelin,Stéphanie Bocs,Pierre Mournet,Hélène Vigneset al. Data in Brief, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩ Article dans une revue (data paper) hal-02618244v1
Ten steps to get started in Genome Assembly and Annotation Victoria Dominguez del Angel,Erik Hjerde,Lieven Sterck,Salvadors Capella-Gutierrez,Cedric Notredameet al. F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩ Article dans une revue (article de synthèse) hal-01712874v1
Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions Alexandre Vaillant,Astrid Honvault,Stéphanie Bocs,Maryline Summo,Garel Makouan-Ziet al. Silvae Genetica, 2018, 67 (1), pp.57-65. ⟨10.2478/sg-2018-0008⟩ Article dans une revue hal-02621313v1
Impact of &lt;em&gt;Austropuccinia psidii&lt;/em&gt; in New Caledonia, a biodiversity hotspot J. Soewarto,F. Carriconde,N. Hugot,S. Bocs,Chantal Hamelinet al. Forest Pathology, 2018, 48 (2), pp.1-12. ⟨10.1111/efp.12402⟩ Article dans une revue hal-02626232v1
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut Alix Armero Villanueva,Luc Baudouin,Stéphanie Bocs,Dominique This PLoS ONE, 2017, 12 (3), ⟨10.1371/journal.pone.0173300⟩ Article dans une revue hal-01605878v1
The genome draft of coconut (Cocos nucifera) Yong Xiao,Pengwei Xu,Haikuo Fan,Luc Baudouin,Wei Xiaet al. GigaScience, 2017, 6 (11), ⟨10.1093/gigascience/gix095⟩ Article dans une revue (data paper) hal-02629356v1
The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics Valentin Guignon,Yann Hueber,Mathieu Rouard,Stéphanie Bocs,David Couvinet al. Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩ Article dans une revue hal-02631148v1
The coffee genome hub: a resource for coffee genomes Alexis Dereeper,Stéphanie Bocs,Mathieu Rouard,Valentin Guignon,Sébastien Ravelet al. Nucleic Acids Research, 2015, 43 (D1), pp.D1028-D1035. ⟨10.1093/nar/gku1108⟩ Article dans une revue hal-03219674v1
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis France Denoeud,Lorenzo Carretero-Paulet,Alexis Dereeper,Gaëtan Droc,Romain Guyotet al. Science, 2014, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩ Article dans une revue hal-02641562v1
Three Infectious Viral Species Lying in Wait in the Banana Genome Matthieu Chabannes,Franc-Christophe Baurens,Pierre-Olivier Duroy,Stéphanie Bocs,Stéphanie Vernereyet al. Journal of Virology, 2013, 87 (15), pp.8624-8637. ⟨10.1128/JVI.00899-13⟩ Article dans une revue hal-01313693v1
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Angélique d'Hont,France Denoeud,Jean-Marc Aury,Franc-Christophe Baurens,Françoise Carreelet al. Nature, 2012, 488 (7410), pp.213-7. ⟨10.1038/nature11241⟩ Article dans une revue hal-00855582v1
Chado controller: advanced annotation management with a community annotation system Valention Guignon,Gaëtan Droc,Michael M. Alaux,Franc-Christophe Baurens,Olivier Garsmeuret al. Bioinformatics, 2012, 28 (7), pp.1054-1056. ⟨10.1093/bioinformatics/bts046⟩ Article dans une revue hal-02651830v1
The genome of Theobroma cacao. Xavier Argout,Jerome Salse,Jean-Marc Aury,Mark J Guiltinan,Gaetan Drocet al. Nature Genetics, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩ Article dans une revue hal-00855922v1
“ Candidatus Cloacamonas Acidaminovorans”: Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division Eric Pelletier,Annett Kreimeyer,Stéphanie Bocs,Zoé Rouy,Gábor Gyapayet al. Journal of Bacteriology, 2008, 190 (7), pp.2572-2579. ⟨10.1128/jb.01248-07⟩ Article dans une revue hal-04582001v1
AMIGene: Annotation of Microbial Genes Gregory Nuel,S. Bocs,S. Cruveiller,D. Vellenet,C. Medigue Progress in Nucleic Acid Research and Molecular Biology, 2003, 13 (31), pp.3723-3726 Article dans une revue hal-00271511v1
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens Éric Duchaud,Christophe Rusniok,Lionel Frangeul,Carmen Buchrieser,Alain Givaudanet al. Nature Biotechnology, 2003, 21 (11), pp.1307-1313. ⟨10.1038/nbt886⟩ Article dans une revue hal-02681540v1

Communication dans un congrès (12)

CIRAD's advanced research towards marker assisted selection of high yielding resistant oil palm (E. guineensis Jacq.): Integrating plant genetics, phytopathology and genomics approaches Sébastien Tisne,Aurélie Daval,Norbert Billotte,Florence Jacob,Michaël Pernaciet al. Plant and Animal Genome Conference (PAG 33), PAG 33, Jan 2026, San Diego, United States. 1 p Communication dans un congrès hal-05535727v1
The puzzling genome of Vanilla planifolia : current knowledge and applications Quentin Piet,Gaëtan Droc,William Marande,Gautier Sarah,Stéphanie Bocset al. International Conference on Comparative Biology of Monocotyledons (Monocots VII), Mar 2024, San José, Costa Rica. 1 p Communication dans un congrès hal-05182058v1
Exploring the Vanilla planifolia genome using bioinformatics tools such as the Vanilla Genome Hub Gaëtan Droc,Quentin Piet,Gautier Sarah,Stéphanie Bocs International Vanilla Congress (IVC 2024), CIRAD; Université de la Réunion, Jun 2024, Saint-Pierre, Réunion. pp.27 Communication dans un congrès hal-05182104v1
Advances in reconstructing the genome of Vanilla planifolia: Addressing partial endoreplication challenges Quentin Piet,Gaëtan Droc,William Marande,Gautier Sarah,Stéphanie Bocset al. International Vanilla Congress (IVC 2024), Cirad; Université de la Réunion, Jun 2024, Saint-Pierre, Réunion. pp.22 Communication dans un congrès hal-05182070v1
A new source of diversity for sorghum improvement? Oberline Fokou Yemata,Abdoul-Aziz Saidou,Pierre Mournet,Stéphanie Sidibe-Bocs,Venasius Lendzemoet al. Sorghum in the 21st Century, Global Sorghum Conference, CIRAD; Kansas State University; Collaborative Research on Sorghum and Millet; SorghumID; IRD; CERAAS, Jun 2023, Montpellier, France. pp.262 Communication dans un congrès hal-05181927v1
Le séquençage haute-fidélité du génome complexe du vanillier apporte une preuve moléculaire de l'endoréplication partielle chez les plantes Stéphanie Bocs 2. Colloque INRAE Genomics, INRAE, Nov 2023, Bordeaux, France. 1 p Communication dans un congrès hal-05182256v1
The coconut nuclear genome: Progress and prospects for crop improvement Andrea Garavito Guyot,Yaodong Yang,Egya Ndede Yankey,Alix Augusto Armero,Ronan Rivallanet al. 30. Plant and Animal Genome Conference (PAG 30), Jan 2023, San Diego, United States Communication dans un congrès hal-05183021v1
Exemples d'études de CropOmics : sur la diversité génomique (cours), sur des introgressions parmi &quot;les 3000 riz&quot; (miniprojets) Stéphanie Bocs,Pascal Gantet,Jean-Christophe Glaszmann OMICS Days 2022 Conférence annuelle de bioinformatique et statistiques, Université de Montpellier, Jan 2022, Montpellier, France. 1 diaporama (21 vues) Communication dans un congrès hal-05179727v1
Transcriptional and post-transcriptionnal regulations in response to stress: a case study in rubber tree Shuangyang Wu,Romain Guyot,Stéphanie Sidibé-Bocs,Benoît Farinas,Gaëtan Drocet al. GDR 3E Epigénétique en écologie et évolution, CNRS, Oct 2020, Perpignan, France. 1 p Communication dans un congrès hal-05176849v1
Genome-wide analysis of Transcriptional and post-Transcriptionnal regulations in hevea under abiotic stresses Wu Shuangyang,Romain Guyot,Romain Guyot,Stéphanie Sidibé-Bocs,Benoît Farinaset al. International Conference on Crop Improvement (ICCI 2019), Nov 2019, Kuala Lumpur, Malaysia. pp.1-4 Communication dans un congrès hal-05174567v1
URGI genome annotation system:an integrated system for structural and functional genome annotation Joelle J. Amselem,Michael Alaux,Nathalie Choisne,Nicolas Lapalu,Baptiste Braultet al. 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p Communication dans un congrès hal-01019754v1
GnpAnnot community annotation system: features, qualifiers, values Stéphanie Sidibe-Bocs,Fabrice Legeai,Gaëtan Droc,Mathieu Rouard,Michael M. Alauxet al. 3. International Biocuration Conference, Apr 2009, Berlin, Germany Communication dans un congrès hal-02758372v1

Poster de conférence (10)

Partial endoreplication challenges whole genome assembly: the case of Vanilla planifolia (Orchidaceae) Quentin Piet,Gaëtan Droc,William Marande,Gautier Sarah,Stéphanie Bocset al. Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. s.n., 1 poster, 2022 Poster de conférence hal-05179427v1
Molecular and functional characterization of a Shaker K+ channel (EgKT2) in oil palm (Elaeis guineensis). Houssein Monder,Sandra Espéout,Sabine Dagmar Zimmermann,Norbert Billotte,Jean‐luc Verdeilet al. Poster Day IPSiM, May 2022, Montpellier, France Poster de conférence hal-04769979v1
Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae) Sonja Siljak-Yakovlev,Olivier Bouchez,Céline Lopez-Roques,Sandra Lepers-Andrzejewski,Laurent Bourgoiset al. Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. 2022 Poster de conférence hal-04343958v1
Molecular and functional characterization of a Shaker K + channel (EgKT2_1) in oil palm (Elaeis guineensis) Houssein Monder,Sandra Espeout,Sabine Zimmermann,Norbert Billotte,Jean‐luc Verdeilet al. SFBV 2022, Aug 2022, Montpellier, France. Poster de conférence hal-04767324v1
South Green bioinformatic resources for tropical and Mediterranean crops Mathieu Rouard,Stéphanie Bocs,Catherine Breton,Aurore Comte,Frédéric de Lamotteet al. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Jun 2020, Montpellier, France. SFBI, 1 p., 2020 Poster de conférence hal-05176724v1
The South Green Genome Hubs Gaëtan Droc,Xavier Argout,Stéphanie Bocs,Aurore Comte,Alexis Dereeperet al. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Jun 2020, Montpellier, France. SFBI, 1 p., 2020 Poster de conférence hal-05176725v1
Secondary cell wall molecular determinism in sorghum is not a simple copy paste of arabidopsis story Lauriane Hennet,Angélique Berger,Noemi Trabanco,Emeline Ricciuti,Jean François Dufayardet al. International Plant Cell Wall Meeting, Jul 2019, Cambridge, United Kingdom. CAP Partner, 1 p., 2019 Poster de conférence hal-05178894v1
Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting Delphine Larivière,David Couvin,Jonathan Lorenzo,Valentin Guignon,Mathieu Rouardet al. JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 437 p., 2016, JOBIM 2016 Poster de conférence hal-01595092v1
Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques Jonathan Lorenzo,Delphine Larivière,Jean-François Dufayard,Dominique This,Stéphanie Bocs JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. Université d'Auvergne, 2015 Poster de conférence hal-01222440v1
South Green bioinformatics platform: Update 2015 A. Armero,Franc-Christophe Baurens,Stephanie Bocs,A. Breil,Frédéric F. de Lamotteet al. 3. Plant Genomics Congress, May 2015, London, United Kingdom. Global Engage, 2015, Plant Genomics Congress Poster de conférence hal-02739966v1

Pré-publication, Document de travail (1)

A roadmap for the adoption of pangenomics in agronomy Stéphanie Bocs,Camille Carrette,Johann Confais,Siegfried Dubois,Ludovic Duvauxet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05357866v2

Thèse (1)

(Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries Stéphanie Bocs Autre [q-bio.OT]. Université Pierre et Marie Curie - Paris VI, 2004. Français. ⟨NNT : ⟩ Thèse tel-00008296v1