Thomas Gregor

Publications

Article dans une revue (25)

Fine-tuning mechanical constraints reveals uncoupled patterning and gene expression programs in murine gastruloids Judith Pineau,Jerome Wong-Ng,Alexandre Mayran,Lucille Lopez-Delisle,Pierre Osteilet al. Development (Cambridge, England), 2025, 152 (18), pp.dev204711. ⟨10.1242/dev.204711⟩ Article dans une revue pasteur-04914937v3
Bridging spatial and temporal scales of developmental gene regulation Andres Hernan Cardona Echeverry,Márcia Mesquita Peixoto,Tohn Borjigin,Thomas Gregor Current Opinion in Genetics and Development, 2025, 92, pp.102328. ⟨10.1016/j.gde.2025.102328⟩ Article dans une revue pasteur-04914954v2
Transcription factor clusters as information transfer agents Rahul Munshi,Jia Ling,Sergey Ryabichko,Eric F Wieschaus,Thomas Gregor Science Advances , 2025, 11 (1), eadp3251. ⟨10.1126/sciadv.adp3251⟩ Article dans une revue pasteur-04876250v2
Deriving a genetic regulatory network from an optimization principle Thomas R Sokolowski,Thomas Gregor,William Bialek,Gašper Tkačik Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (1), pp.e2402925121. ⟨10.1073/pnas.2402925121⟩ Article dans une revue pasteur-03988951v2
Finding the last bits of positional information Lauren Mcgough,Helena Casademunt,Miloš Nikolić,Zoe Aridor,Mariela Petkovaet al. PRX Life, 2024, 2 (1), pp.013016. ⟨10.1103/prxlife.2.013016⟩ Article dans une revue pasteur-04349957v2
Scale invariance in early embryonic development Miloš Nikolić,Victoria Antonetti,Feng Liu,Gentian Muhaxheri,Mariela Petkovaet al. Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (46), pp.e2403265121. ⟨10.1073/pnas.2403265121⟩ Article dans une revue pasteur-04371157v2
Growth produces coordination trade-offs in Trichoplax adhaerens, an animal lacking a central nervous system Mircea R Davidescu,Pawel Romanczuk,Thomas Gregor,Iain D. Couzin Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (11), pp.e2206163120. ⟨10.1073/pnas.2206163120⟩ Article dans une revue pasteur-04027931v1
Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome David B Brueckner,Hongtao Chen,Lev Barinov,Benjamin Zoller,Thomas Gregor Science, 2023, 380 (6652), pp.1357-1362. ⟨10.1126/science.adf5568⟩ Article dans une revue pasteur-03988837v2
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project Job Dekker,Frank Alber,Sarah Aufmkolk,Brian J Beliveau,Benoit G Bruneauet al. Molecular Cell, 2023, 83 (15), pp.2624-2640. ⟨10.1016/j.molcel.2023.06.018⟩ Article dans une revue hal-04190299v1
Functional analysis of the Drosophila eve locus in response to non-canonical combinations of gap gene expression levels Netta Haroush,Michal Levo,Eric Wieschaus,Thomas Gregor Developmental Cell, 2023, 58 (23), pp.2789-2801.e5. ⟨10.1016/j.devcel.2023.10.001⟩ Article dans une revue pasteur-04190268v2
Precise and scalable self-organization in mammalian pseudo-embryos Mélody Merle,Leah Friedman,Corinne Chureau,Armin Shoushtarizadeh,Thomas Gregor Nature Structural and Molecular Biology, 2023, 31 (6), pp.896-902. ⟨10.1038/s41594-024-01251-4⟩ Article dans une revue pasteur-04116777v1
Eukaryotic gene regulation at equilibrium, or non? Benjamin Zoller,Thomas Gregor,Gašper Tkačik Current Opinion in Systems Biology, 2022, 31, pp.100435. ⟨10.1016/j.coisb.2022.100435⟩ Article dans une revue pasteur-03896762v1
Structured foraging of soil predators unveils functional responses to bacterial defenses Fernando W. Rossine,Gabriel Vercelli,Corina E. Tarnita,Thomas Gregor Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (52), pp.e2210995119. ⟨10.1073/pnas.2210995119⟩ Article dans une revue pasteur-03896786v2
Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation Anand Singh,Ping Wu,Sergey Ryabichko,João Raimundo,Michael Swanet al. Cell Reports, 2022, 38 (12), pp.110543. ⟨10.1016/j.celrep.2022.110543⟩ Article dans une revue hal-03896657v1
Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in flies Lukas Voortman,Caitlin Anderson,Elizabeth Urban,Luorongxin Yuan,Sang Tranet al. Developmental Cell, 2022, 57 (15), pp.1817-1832.e5. ⟨10.1016/j.devcel.2022.06.016⟩ Article dans une revue pasteur-03896740v1
Latent space of a small genetic network: Geometry of dynamics and information Rabea Seyboldt,Juliette Lavoie,Adrien Henry,Jules Vanaret,Mariela Petkovaet al. Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (26), pp.e2113651119. ⟨10.1073/pnas.2113651119⟩ Article dans une revue pasteur-03896725v1
Transcriptional coupling of distant regulatory genes in living embryos Michal Levo,João Raimundo,Xin Yang Bing,Zachary Sisco,Philippe Batutet al. Nature, 2022, 605 (7911), pp.754-760. ⟨10.1038/s41586-022-04680-7⟩ Article dans une revue pasteur-03896691v1
The impact of space and time on the functional output of the nucleus Marcelo Nollmann,Isma Bennabi,Markus Götz,Thomas Gregor Cold Spring Harbor Perspectives in Biology, 2021, pp.a040378. ⟨10.1101/cshperspect.a040378⟩ Article dans une revue hal-03432715v1
Trading bits in the readout from a genetic network Marianne Bauer,Mariela D Petkova,Thomas Gregor,Eric F Wieschaus,William Bialek Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (46), pp.e2109011118. ⟨10.1073/pnas.2109011118⟩ Article dans une revue pasteur-03216308v2
The many bits of positional information Gašper Tkačik,Thomas Gregor Development (Cambridge, England), 2021, 148 (2), ⟨10.1242/dev.176065⟩ Article dans une revue pasteur-03213416v1
Physics meets biology: The joining of two forces to further our understanding of cellular function Michelle Wang,Mario Nicodemi,Nynke Dekker,Thomas Gregor,David Holcmanet al. Molecular Cell, 2021, 81 (15), pp.3033-3037. ⟨10.1016/j.molcel.2021.07.009⟩ Article dans une revue pasteur-03896644v1
Eco-evolutionary significance of “loners” Fernando W Rossine,Ricardo Martinez-Garcia,Allyson E Sgro,Thomas Gregor,Corina E Tarnita PLoS Biology, 2020, 18, ⟨10.1371/journal.pbio.3000642⟩ Article dans une revue pasteur-03216299v1
Optimal Decoding of Cellular Identities in a Genetic Network Mariela D Petkova,Gašper Tkačik,William Bialek,Eric F Wieschaus,Thomas Gregor Cell, 2019, 176 (4), pp.844 - 855.e15. ⟨10.1016/j.cell.2019.01.007⟩ Article dans une revue pasteur-03216294v1
Dynamic interplay between enhancer–promoter topology and gene activity Hongtao Chen,Michal Levo,Lev Barinov,Miki Fujioka,James Jayneset al. Nature Genetics, 2018, 50 (9), pp.1296-1303. ⟨10.1038/s41588-018-0175-z⟩ Article dans une revue pasteur-03869431v1
Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting Benjamin Zoller,Shawn Little,Thomas Gregor Cell, 2018, 175 (3), pp.835-847.e25. ⟨10.1016/j.cell.2018.09.056⟩ Article dans une revue pasteur-03869446v1

Chapitre d'ouvrage (3)

The impact of space and time on the functional output of the nucleus Marcelo Nollmann,Isma Bennabi,Markus Götz,Thomas Gregor Ana Pombo; Martin Hetzer; Tom Misteli. Nucleus, 2nd ed., Cold Spring Harbor laboratory press, 2021, 978-1-621823-89-6 Chapitre d'ouvrage pasteur-03216312v1
Using RNA Tags for Multicolor Live Imaging of Chromatin Loci and Transcription in Drosophila Embryos Hongtao Chen,Thomas Gregor Manfred Heinlein. RNA tagging : methods and protocols, 2166, pp.373 - 384, 2020, Methods in molecular biology, 978-1-0716-0712-1. ⟨10.1007/978-1-0716-0712-1_22⟩ Chapitre d'ouvrage pasteur-03213923v1
Single mRNA Molecule Detection in Drosophila Shawn Little,Thomas Gregor RNA Detection, 1649, Springer New York, pp.127-142, 2018, Methods in Molecular Biology, ⟨10.1007/978-1-4939-7213-5_8⟩ Chapitre d'ouvrage hal-03869357v1

Pré-publication, Document de travail (7)

Invariant non-equilibrium dynamics of transcriptional regulation optimize information flow Benjamin Zoller,Alexis Bénichou,Thomas Gregor,Gašper Tkačik 2026 Pré-publication, Document de travail pasteur-05456379v1
An integrated quantitative single-objective light-sheet microscope for subcellular dynamics in embryos and cultured multicellular systems Armin Shoushtarizadeh,Michele Cerminara,Corinne Chureau,Leah Friedman,Deepthi Kailashet al. 2026 Pré-publication, Document de travail pasteur-05455985v1
The Physics of Sustainability: Material and Power Constraints for the Long Term José Halloy,Petros Chatzimpiros,François Graner,Thomas Gregor 2025 Pré-publication, Document de travail hal-05412987v1
Size-dependent temporal decoupling of morphogenesis and transcriptional programs in gastruloids Isma Bennabi,Pauline Hansen,Melody Merle,Judith Pineau,Lucille Lopez-Delisleet al. 2024 Pré-publication, Document de travail pasteur-04876299v1
Common bursting relationships underlie eukaryotic transcription dynamics Po-Ta Chen,Benjamin Zoller,Michal Levo,Thomas Gregor 2023 Pré-publication, Document de travail pasteur-04116784v1
Transcription-dependent spatial organization of a gene locus Lev Barinov,Sergey Ryabichko,William Bialek,Thomas Gregor 2020 Pré-publication, Document de travail pasteur-03213927v1
Action at a distance in transcriptional regulation William Bialek,Thomas Gregor,Gašper Tkačik 2019 Pré-publication, Document de travail pasteur-03216303v1