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Thibaud Porphyre

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Assessing the Risk of Windborne Dispersal of Culicoides Midges in Emerging Epizootic Hemorrhagic Disease Virus Outbreaks in France

Amandine Bibard , Davide Martinetti , Albert Picado , Karine Chalvet-Monfray , Thibaud Porphyre
Transboundary and emerging diseases, 2024, 2024 (1), pp.5571195. ⟨10.1155/2024/5571195⟩
Journal articles hal-04629366v1
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Quantitative risk assessment for the introduction of bluetongue virus into mainland Europe by long‐distance wind dispersal of Culicoides spp.: A case study from Sardinia

Amandine Bibard , Davide Martinetti , Aymeric Giraud , Albert Picado , Karine Chalvet-Monfray
Risk Analysis, In press, ⟨10.1111/risa.14345⟩
Journal articles hal-04632962v1
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Identifying target areas for risk-based surveillance and control of transboundary animal diseases: a seasonal analysis of slaughter and live-trade cattle movements in Uganda

Lina González-Gordon , Thibaud Porphyre , Adrian Muwonge , Noelina Nantima , Rose Ademun
Scientific Reports, 2023, 13 (1), pp.18619. ⟨10.1038/s41598-023-44518-4⟩
Journal articles hal-04265838v1
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Interaction of Human Behavioral Factors Shapes the Transmission of Arboviruses by Aedes and Culex Mosquitoes

Aubane Renard , Fernanda Pérez Lombardini , Mitsuri Pacheco Zapata , Thibaud Porphyre , Ana Bento
Pathogens, 2023, 12 (12), pp.1421. ⟨10.3390/pathogens12121421⟩
Journal articles hal-04326353v1

« Un lavage, c’est un lavage » : des chauffeurs bovins face aux consignes sanitaires

Clémence Beslay , Mary Bouix , Henri Fauroux , Amandine Gautier , Francesco Luposella
Les Mondes du travail , 2023, Travail et écologie, 2023 (29), pp.147-163
Journal articles hal-04089184v1
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Developing digital contact tracing tailored to haulage in East Africa to support COVID-19 surveillance: a protocol

Adrian Muwonge , Christine Mbabazi Mpyangu , Allen Nsangi , Ibrahim Mugerwa , Barend Bronsvoort
BMJ Open, 2022, 12 (9), pp.e058457. ⟨10.1136/bmjopen-2021-058457⟩
Journal articles hal-03768649v1

Exact Bayesian inference of epidemiological parameters from mortality data: application to African swine fever virus

David Ewing , Christopher Pooley , Kokouvi Gamado , Thibaud Porphyre , Glenn Marion
Journal of the Royal Society Interface, 2022, 19 (188), ⟨10.1098/rsif.2022.0013⟩
Journal articles hal-03747470v1
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A scoping review of foot‐and‐mouth disease risk, based on spatial and spatio‐temporal analysis of outbreaks in endemic settings

L González Gordon , Thibaud Porphyre , D Muhanguzi , A Muwonge , L Boden
Transboundary and emerging diseases, 2022, 69, pp.3198-3215. ⟨10.1111/tbed.14769⟩
Journal articles hal-03865937v1
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Development and Evaluation of Two Approaches of Visual Sensitivity Analysis to Support Epidemiological Modeling

Erik Rydow , Rita Borgo , Hui Fang , Thomas Torsney-Weir , Ben Swallow
IEEE Transactions on Visualization and Computer Graphics, 2022, 29 (1), pp.1255 - 1265. ⟨10.1109/TVCG.2022.3209464⟩
Journal articles hal-03806613v1
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Complex model calibration through emulation, a worked example for a stochastic epidemic model

Michael Dunne , Hossein Mohammadi , Peter Challenor , Rita Borgo , Thibaud Porphyre
Epidemics, 2022, 39, pp.100574. ⟨10.1016/j.epidem.2022.100574⟩
Journal articles hal-03747498v1
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FAIR data pipeline: provenance-driven data management for traceable scientific workflows

Sonia Natalie Mitchell , Andrew Lahiff , Nathan Cummings , Jonathan Hollocombe , Bram Boskamp
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2022, 380 (2233), pp.20210300. ⟨10.1098/rsta.2021.0300⟩
Journal articles hal-03752208v1
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High Prevalence and Factors Associated With the Distribution of the Integron intI1 and intI2 Genes in Scottish Cattle Herds

Cristina Fernández Rivas , Thibaud Porphyre , Margo Chase-Topping , Charles Knapp , Helen Williamson
Frontiers in Veterinary Science, 2021, 8, pp.755833. ⟨10.3389/fvets.2021.755833⟩
Journal articles hal-03747502v1
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Prevalence and Epidemiology of Non-O157 Escherichia coli Serogroups O26, O103, O111, and O145 and Shiga Toxin Gene Carriage in Scottish Cattle, 2014–2015

Deborah Hoyle , Marianne Keith , Helen Williamson , Kareen Macleod , Heather Mathie
Applied and Environmental Microbiology, 2021, 87 (10), pp.e03142-20. ⟨10.1128/AEM.03142-20⟩
Journal articles hal-03747510v1
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Using machine learning improves predictions of herd-level bovine tuberculosis breakdowns in Great Britain

K. Stański , S. Lycett , Thibaud Porphyre , Barend M. de C. Bronsvoort
Scientific Reports, 2021, 11 (1), pp.2208. ⟨10.1038/s41598-021-81716-4⟩
Journal articles hal-03747513v1

Uptake of Diagnostic Tests by Livestock Farmers: A Stochastic Game Theory Approach

Sibylle Mohr , Rodney Beard , Alasdair Nisbet , Stewart Burgess , Richard Reeve
Frontiers in Veterinary Science, 2020, 7, ⟨10.3389/fvets.2020.00036⟩
Journal articles hal-04612716v1

Editorial: Risk-Based Evidence for Animal Health Policy

Lisa Boden , Harriet Auty , Amy Delgado , John Grewar , Amy Hagerman
Frontiers in Veterinary Science, 2020, 7, ⟨10.3389/fvets.2020.00595⟩
Journal articles hal-04612701v1

Post‐outbreak African horse sickness surveillance: A scenario tree evaluation in South Africa’s controlled area

John Duncan Grewar , Thibaud Porphyre , Evan Sergeant , Camilla Theresa Weyer , Peter Neil Thompson
Transboundary and emerging diseases, 2020, pp.tbed.13566. ⟨10.1111/tbed.13566⟩
Journal articles hal-04612730v1

Multilayer network analysis unravels haulage vehicles as a hidden threat to the British swine industry

Thibaud Porphyre , Barend Bronsvoort , George Gunn , Carla Correia-Gomes
Transboundary and emerging diseases, 2020, 67 (3), pp.1231-1246. ⟨10.1111/tbed.13459⟩
Journal articles hal-04612773v1

Framework for Estimating Indirect Costs in Animal Health Using Time Series Analysis

Alyson Barratt , Karl Rich , Jude Eze , Thibaud Porphyre , George Gunn
Frontiers in Veterinary Science, 2019, 6, ⟨10.3389/fvets.2019.00190⟩
Journal articles hal-04612719v1

Assessing the potential of plains zebra to maintain African horse sickness in the Western Cape Province, South Africa

Thibaud Porphyre , John Grewar
PLoS ONE, 2019, 14 (10), pp.e0222366. ⟨10.1371/journal.pone.0222366⟩
Journal articles hal-04612775v1

Endemic foot and mouth disease: pastoral in-herd disease dynamics in sub-Saharan Africa

I. Mclachlan , G. Marion , I. Mckendrick , Thibaud Porphyre , I. Handel
Scientific Reports, 2019, 9 (1), pp.17349. ⟨10.1038/s41598-019-53658-5⟩
Journal articles hal-04612782v1

Characterizing Livestock Markets, Primary Diseases, and Key Management Practices Along the Livestock Supply Chain in Cameroon

Paolo Motta , Thibaud Porphyre , Ian Handel , Saidou Hamman , Victor Ngu Ngwa
Frontiers in Veterinary Science, 2019, 6, ⟨10.3389/fvets.2019.00101⟩
Journal articles hal-04612744v1

Drivers of Live Cattle Price in the Livestock Trading System of Central Cameroon

Paolo Motta , Ian Handel , Gustaf Rydevik , Saidou Hamman , Victor Ngu Ngwa
Frontiers in Veterinary Science, 2018, 4, ⟨10.3389/fvets.2017.00244⟩
Journal articles hal-04612728v1

Cattle transhumance and agropastoral nomadic herding practices in Central Cameroon

Paolo Motta , Thibaud Porphyre , Saidou Hamman , Kenton Morgan , Victor Ngu Ngwa
BMC Veterinary Research, 2018, 14 (1), pp.214. ⟨10.1186/s12917-018-1515-z⟩
Journal articles hal-04612758v1

Assessing the Economic Impact of Vaccine Availability When Controlling Foot and Mouth Disease Outbreaks

Thibaud Porphyre , Karl Rich , Harriet Auty
Frontiers in Veterinary Science, 2018, 5, ⟨10.3389/fvets.2018.00047⟩
Journal articles hal-04612769v1

Implications of the cattle trade network in Cameroon for regional disease prevention and control

Paolo Motta , Thibaud Porphyre , Ian Handel , Saidou Hamman , Victor Ngu Ngwa
Scientific Reports, 2017, 7 (1), pp.43932. ⟨10.1038/srep43932⟩
Journal articles hal-04612768v1

Data-Driven Risk Assessment from Small Scale Epidemics: Estimation and Model Choice for Spatio-Temporal Data with Application to a Classical Swine Fever Outbreak

Kokouvi Gamado , Glenn Marion , Thibaud Porphyre
Frontiers in Veterinary Science, 2017, 4, ⟨10.3389/fvets.2017.00016⟩
Journal articles hal-04612780v1

Vulnerability of the British swine industry to classical swine fever

Thibaud Porphyre , Carla Correia-Gomes , Margo Chase-Topping , Kokouvi Gamado , Harriet Auty
Scientific Reports, 2017, 7 (1), pp.42992. ⟨10.1038/srep42992⟩
Journal articles hal-04612738v1

Using national movement databases to help inform responses to swine disease outbreaks in Scotland: the impact of uncertainty around incursion time

Thibaud Porphyre , Lisa Boden , Carla Correia-Gomes , Harriet Auty , George Gunn
Scientific Reports, 2016, 6 (1), pp.20258. ⟨10.1038/srep20258⟩
Journal articles hal-04612778v1

Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom

David Walker , Seán Fee , Gill Hartley , Jane Learmount , Maria O’hagan
Scientific Reports, 2016, 6 (1), pp.36051. ⟨10.1038/srep36051⟩
Journal articles hal-04612762v1

The Importance of Socio-Economic Versus Environmental Risk Factors for Reported Dengue Cases in Java, Indonesia

Siwi Wijayanti , Thibaud Porphyre , Margo Chase-Topping , Stephanie Rainey , Melanie Mcfarlane
PLoS Neglected Tropical Diseases, 2016, 10 (9), pp.e0004964. ⟨10.1371/journal.pntd.0004964⟩
Journal articles hal-04612734v1

Not just a matter of size: a hospital-level risk factor analysis of MRSA bacteraemia in Scotland

Cheryl Gibbons , Bram van Bunnik , Oliver Blatchford , Chris Robertson , Thibaud Porphyre
BMC Infectious Diseases, 2016, 16 (1), pp.222. ⟨10.1186/s12879-016-1563-6⟩
Journal articles hal-04612751v1

Small-scale pig farmers’ behavior, silent release of African swine fever virus and consequences for disease spread

Solenne Costard , Francisco Zagmutt , Thibaud Porphyre , Dirk Udo Pfeiffer
Scientific Reports, 2015, 5 (1), pp.17074. ⟨10.1038/srep17074⟩
Journal articles hal-04612767v1

E. coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data

Liam Herbert , Leila Vali , Deborah Hoyle , Giles Innocent , Iain Mckendrick
BMC Veterinary Research, 2014, 10 (1), pp.95. ⟨10.1186/1746-6148-10-95⟩
Journal articles hal-04612771v1

How commercial and non-commercial swine producers move pigs in Scotland: a detailed descriptive analysis

Thibaud Porphyre , Lisa Boden , Carla Correia-Gomes , Harriet Auty , George Gunn
BMC Veterinary Research, 2014, 10 (1), pp.140. ⟨10.1186/1746-6148-10-140⟩
Journal articles hal-04612766v1

Mapping brucellosis risk in communities in the Republic of Armenia

Thibaud Porphyre , Ronald Jackson , Carola Sauter-Louis , David Ward , Grigor Baghyan
Geospatial Health, 2010, 5 (1), pp.103 - 118
Journal articles hal-02656857v1

Analysis of Amblyomma surveillance data in the Caribbean: Lessons for future control programmes

S Ahoussou , Renaud Lancelot , B Sanford , Thibaud Porphyre , P Bartlette-Powell
Veterinary Parasitology, 2010, 167 (2-4), pp.327-335. ⟨10.1016/j.vetpar.2009.09.035⟩
Journal articles hal-02661422v1
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Influence of contact heterogeneity on TB reproduction ratio R$_0$ in a free-living brushtail possum Trichosurus vulpecula population

Thibaud Porphyre , Mark Stevenson , Ron Jackson , Joanna Mckenzie
Veterinary Research, 2008, 39 (3), pp.1. ⟨10.1051/vetres:2008007⟩
Journal articles hal-00902923v1
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A descriptive spatial analysis of bovine tuberculosis in intensively controlled cattle farms in New Zealand

Thibaud Porphyre , Joanna Mckenzie , Mark Stevenson
Veterinary Research, 2007, 38 (3), pp.465-479. ⟨10.1051/vetres:2007003⟩
Journal articles hal-00902872v1

Modelling the abundance of mosquito vectors versus flooding dynamics

Thibaud Porphyre , Dj Bicout , P Sabatier
Ecological Modelling, 2005, 183 (2-3), pp.173-181
Journal articles hal-02672981v1