Thibaud Porphyre

Publications

Article dans une revue (48)

Spatio‐temporal patterns and risk factors of wild boar–pig farm contact across Europe Kevin Morelle,Elodie Wielgus,Rudy Brogi,Manisha Bhardwaj,Simon Chamaillé-Jammeset al. Journal of Applied Ecology, 2026, 63 (2), pp.e70314. ⟨10.1111/1365-2664.70314⟩ Article dans une revue hal-05521803v1
Spatial and temporal risk assessment of Epizootic Hemorrhagic Disease Virus introduction in Europe: A comparative analysis of trade and wind dispersal pathways Amandine Bibard,Davide Martinetti,Albert Picado,Karine Chalvet-Monfray,Thibaud Porphyre Preventive Veterinary Medicine, 2025, 245, pp.106656. ⟨10.1016/j.prevetmed.2025.106656⟩ Article dans une revue hal-05213534v3
The time of infection matters: seasonal interplay between host and pathogen drives epidemic dynamics Rémi Fay,Marlène Gamelon,Eric Baubet,Thibaud Porphyre Oikos, 2025, 2025 (3), pp.e10750. ⟨10.1111/oik.10750⟩ Article dans une revue hal-04841051v1
Quantitative risk assessment for the introduction of bluetongue virus into mainland Europe by long‐distance wind dispersal of Culicoides spp.: A case study from Sardinia Amandine Bibard,Davide Martinetti,Aymeric Giraud,Albert Picado,Karine Chalvet-Monfrayet al. Risk Analysis, 2025, 45, pp.108-127. ⟨10.1111/risa.14345⟩ Article dans une revue hal-04632962v2
iPAR: A framework for modelling and inferring information about disease spread when the populations at risk are unknown Stephen Catterall,Thibaud Porphyre,Glenn Marion PLoS Computational Biology, 2025, 21 (6), pp.e1012622. ⟨10.1371/journal.pcbi.1012622⟩ Article dans une revue hal-05131725v1
Comment anticiper le risque de dispersion des Culicoides par le vent ? Windi App Vaissié Pauline,Martinetti Davide,Siberchicot Aurélie,Delmotte Stéphane,Porphyre Thibaudet al. Epidémiologie et Santé Animale, 2025, 85 (11) Article dans une revue hal-05539546v1
Climate warming drives pulsed resources and disease outbreak risk Rémi Fay,Marlène Gamelon,Thibaud Porphyre Proceedings of the Royal Society B: Biological Sciences, 2025, 292 (2052), ⟨10.1098/rspb.2025.1340⟩ Article dans une revue hal-05208908v1
Factors associated with the spatiotemporal distribution of dog rabies in Tunisia Sana Kalthoum,Samia Mzoughi,Raja Gharbi,Monia Lachtar,Bassem Bel Haj Mohamedet al. PLoS Neglected Tropical Diseases, 2024, 18 (8), pp.e0012296. ⟨10.1371/journal.pntd.0012296⟩ Article dans une revue hal-04669946v1
Cleaning practices of transport vehicles by commercial and non-commercial livestock markets users in Scotland Rebecca Allen,Lisa Boden,Ian Hutchinson,Julie Stirling,Thibaud Porphyre Research in Veterinary Science, 2024, 180, pp.105413. ⟨10.1016/j.rvsc.2024.105413⟩ Article dans une revue hal-04696041v1
Assessing the Risk of Windborne Dispersal of Culicoides Midges in Emerging Epizootic Hemorrhagic Disease Virus Outbreaks in France Amandine Bibard,Davide Martinetti,Albert Picado,Karine Chalvet-Monfray,Thibaud Porphyre Transboundary and emerging diseases, 2024, 2024 (1), pp.5571195. ⟨10.1155/2024/5571195⟩ Article dans une revue hal-04629366v1
Identifying target areas for risk-based surveillance and control of transboundary animal diseases: a seasonal analysis of slaughter and live-trade cattle movements in Uganda Lina González-Gordon,Thibaud Porphyre,Adrian Muwonge,Noelina Nantima,Rose Ademunet al. Scientific Reports, 2023, 13 (1), pp.18619. ⟨10.1038/s41598-023-44518-4⟩ Article dans une revue hal-04265838v1
« Un lavage, c’est un lavage » : des chauffeurs bovins face aux consignes sanitaires Clémence Beslay,Mary Bouix,Henri Fauroux,Amandine Gautier,Francesco Luposellaet al. Les Mondes du travail , 2023, Travail et écologie, 2023 (29), pp.147-163 Article dans une revue hal-04089184v1
Interaction of Human Behavioral Factors Shapes the Transmission of Arboviruses by Aedes and Culex Mosquitoes Aubane Renard,Fernanda Pérez Lombardini,Mitsuri Pacheco Zapata,Thibaud Porphyre,Ana Bentoet al. Pathogens, 2023, 12 (12), pp.1421. ⟨10.3390/pathogens12121421⟩ Article dans une revue hal-04326353v1
Exact Bayesian inference of epidemiological parameters from mortality data: application to African swine fever virus David Ewing,Christopher Pooley,Kokouvi Gamado,Thibaud Porphyre,Glenn Marion Journal of the Royal Society Interface, 2022, 19 (188), ⟨10.1098/rsif.2022.0013⟩ Article dans une revue hal-03747470v1
A scoping review of foot‐and‐mouth disease risk, based on spatial and spatio‐temporal analysis of outbreaks in endemic settings L González Gordon,Thibaud Porphyre,D Muhanguzi,A Muwonge,L Bodenet al. Transboundary and emerging diseases, 2022, 69, pp.3198-3215. ⟨10.1111/tbed.14769⟩ Article dans une revue (article de synthèse) hal-03865937v1
Complex model calibration through emulation, a worked example for a stochastic epidemic model Michael Dunne,Hossein Mohammadi,Peter Challenor,Rita Borgo,Thibaud Porphyreet al. Epidemics, 2022, 39, pp.100574. ⟨10.1016/j.epidem.2022.100574⟩ Article dans une revue hal-03747498v1
FAIR data pipeline: provenance-driven data management for traceable scientific workflows Sonia Natalie Mitchell,Andrew Lahiff,Nathan Cummings,Jonathan Hollocombe,Bram Boskampet al. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2022, 380 (2233), pp.20210300. ⟨10.1098/rsta.2021.0300⟩ Article dans une revue hal-03752208v1
Development and Evaluation of Two Approaches of Visual Sensitivity Analysis to Support Epidemiological Modeling Erik Rydow,Rita Borgo,Hui Fang,Thomas Torsney-Weir,Ben Swallowet al. IEEE Transactions on Visualization and Computer Graphics, 2022, 29 (1), pp.1255 - 1265. ⟨10.1109/TVCG.2022.3209464⟩ Article dans une revue hal-03806613v1
Developing digital contact tracing tailored to haulage in East Africa to support COVID-19 surveillance: a protocol Adrian Muwonge,Christine Mbabazi Mpyangu,Allen Nsangi,Ibrahim Mugerwa,Barend Bronsvoortet al. BMJ Open, 2022, 12 (9), pp.e058457. ⟨10.1136/bmjopen-2021-058457⟩ Article dans une revue hal-03768649v1
Prevalence and Epidemiology of Non-O157 Escherichia coli Serogroups O26, O103, O111, and O145 and Shiga Toxin Gene Carriage in Scottish Cattle, 2014–2015 Deborah Hoyle,Marianne Keith,Helen Williamson,Kareen Macleod,Heather Mathieet al. Applied and Environmental Microbiology, 2021, 87 (10), pp.e03142-20. ⟨10.1128/AEM.03142-20⟩ Article dans une revue hal-03747510v1
High Prevalence and Factors Associated With the Distribution of the Integron intI1 and intI2 Genes in Scottish Cattle Herds Cristina Fernández Rivas,Thibaud Porphyre,Margo Chase-Topping,Charles Knapp,Helen Williamsonet al. Frontiers in Veterinary Science, 2021, 8, pp.755833. ⟨10.3389/fvets.2021.755833⟩ Article dans une revue hal-03747502v1
Using machine learning improves predictions of herd-level bovine tuberculosis breakdowns in Great Britain K. Stański,S. Lycett,Thibaud Porphyre,Barend M. de C. Bronsvoort Scientific Reports, 2021, 11 (1), pp.2208. ⟨10.1038/s41598-021-81716-4⟩ Article dans une revue hal-03747513v1
Multilayer network analysis unravels haulage vehicles as a hidden threat to the British swine industry Thibaud Porphyre,Barend Bronsvoort,George Gunn,Carla Correia-Gomes Transboundary and emerging diseases, 2020, 67 (3), pp.1231-1246. ⟨10.1111/tbed.13459⟩ Article dans une revue hal-04612773v1
Post‐outbreak African horse sickness surveillance: A scenario tree evaluation in South Africa’s controlled area John Duncan Grewar,Thibaud Porphyre,Evan Sergeant,Camilla Theresa Weyer,Peter Neil Thompson Transboundary and emerging diseases, 2020, pp.tbed.13566. ⟨10.1111/tbed.13566⟩ Article dans une revue hal-04612730v1
Editorial: Risk-Based Evidence for Animal Health Policy Lisa Boden,Harriet Auty,Amy Delgado,John Grewar,Amy Hagermanet al. Frontiers in Veterinary Science, 2020, 7, ⟨10.3389/fvets.2020.00595⟩ Article dans une revue hal-04612701v1
Uptake of Diagnostic Tests by Livestock Farmers: A Stochastic Game Theory Approach Sibylle Mohr,Rodney Beard,Alasdair Nisbet,Stewart Burgess,Richard Reeveet al. Frontiers in Veterinary Science, 2020, 7, ⟨10.3389/fvets.2020.00036⟩ Article dans une revue hal-04612716v1
Characterizing Livestock Markets, Primary Diseases, and Key Management Practices Along the Livestock Supply Chain in Cameroon Paolo Motta,Thibaud Porphyre,Ian Handel,Saidou Hamman,Victor Ngu Ngwaet al. Frontiers in Veterinary Science, 2019, 6, ⟨10.3389/fvets.2019.00101⟩ Article dans une revue hal-04612744v1
Framework for Estimating Indirect Costs in Animal Health Using Time Series Analysis Alyson Barratt,Karl Rich,Jude Eze,Thibaud Porphyre,George Gunnet al. Frontiers in Veterinary Science, 2019, 6, ⟨10.3389/fvets.2019.00190⟩ Article dans une revue hal-04612719v1
Assessing the potential of plains zebra to maintain African horse sickness in the Western Cape Province, South Africa Thibaud Porphyre,John Grewar PLoS ONE, 2019, 14 (10), pp.e0222366. ⟨10.1371/journal.pone.0222366⟩ Article dans une revue hal-04612775v1
Endemic foot and mouth disease: pastoral in-herd disease dynamics in sub-Saharan Africa I. Mclachlan,G. Marion,I. Mckendrick,Thibaud Porphyre,I. Handelet al. Scientific Reports, 2019, 9 (1), pp.17349. ⟨10.1038/s41598-019-53658-5⟩ Article dans une revue hal-04612782v1
Cattle transhumance and agropastoral nomadic herding practices in Central Cameroon Paolo Motta,Thibaud Porphyre,Saidou Hamman,Kenton Morgan,Victor Ngu Ngwaet al. BMC Veterinary Research, 2018, 14 (1), pp.214. ⟨10.1186/s12917-018-1515-z⟩ Article dans une revue hal-04612758v1
Assessing the Economic Impact of Vaccine Availability When Controlling Foot and Mouth Disease Outbreaks Thibaud Porphyre,Karl Rich,Harriet Auty Frontiers in Veterinary Science, 2018, 5, ⟨10.3389/fvets.2018.00047⟩ Article dans une revue hal-04612769v1
Drivers of Live Cattle Price in the Livestock Trading System of Central Cameroon Paolo Motta,Ian Handel,Gustaf Rydevik,Saidou Hamman,Victor Ngu Ngwaet al. Frontiers in Veterinary Science, 2018, 4, ⟨10.3389/fvets.2017.00244⟩ Article dans une revue hal-04612728v1
Data-Driven Risk Assessment from Small Scale Epidemics: Estimation and Model Choice for Spatio-Temporal Data with Application to a Classical Swine Fever Outbreak Kokouvi Gamado,Glenn Marion,Thibaud Porphyre Frontiers in Veterinary Science, 2017, 4, ⟨10.3389/fvets.2017.00016⟩ Article dans une revue hal-04612780v1
Implications of the cattle trade network in Cameroon for regional disease prevention and control Paolo Motta,Thibaud Porphyre,Ian Handel,Saidou Hamman,Victor Ngu Ngwaet al. Scientific Reports, 2017, 7 (1), pp.43932. ⟨10.1038/srep43932⟩ Article dans une revue hal-04612768v1
Vulnerability of the British swine industry to classical swine fever Thibaud Porphyre,Carla Correia-Gomes,Margo Chase-Topping,Kokouvi Gamado,Harriet Autyet al. Scientific Reports, 2017, 7 (1), pp.42992. ⟨10.1038/srep42992⟩ Article dans une revue hal-04612738v1
Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom David Walker,Seán Fee,Gill Hartley,Jane Learmount,Maria O’haganet al. Scientific Reports, 2016, 6 (1), pp.36051. ⟨10.1038/srep36051⟩ Article dans une revue hal-04612762v1
The Importance of Socio-Economic Versus Environmental Risk Factors for Reported Dengue Cases in Java, Indonesia Siwi Wijayanti,Thibaud Porphyre,Margo Chase-Topping,Stephanie Rainey,Melanie Mcfarlaneet al. PLoS Neglected Tropical Diseases, 2016, 10 (9), pp.e0004964. ⟨10.1371/journal.pntd.0004964⟩ Article dans une revue hal-04612734v1
Not just a matter of size: a hospital-level risk factor analysis of MRSA bacteraemia in Scotland Cheryl Gibbons,Bram van Bunnik,Oliver Blatchford,Chris Robertson,Thibaud Porphyreet al. BMC Infectious Diseases, 2016, 16 (1), pp.222. ⟨10.1186/s12879-016-1563-6⟩ Article dans une revue hal-04612751v1
Using national movement databases to help inform responses to swine disease outbreaks in Scotland: the impact of uncertainty around incursion time Thibaud Porphyre,Lisa Boden,Carla Correia-Gomes,Harriet Auty,George Gunnet al. Scientific Reports, 2016, 6 (1), pp.20258. ⟨10.1038/srep20258⟩ Article dans une revue hal-04612778v1
Small-scale pig farmers’ behavior, silent release of African swine fever virus and consequences for disease spread Solenne Costard,Francisco Zagmutt,Thibaud Porphyre,Dirk Udo Pfeiffer Scientific Reports, 2015, 5 (1), pp.17074. ⟨10.1038/srep17074⟩ Article dans une revue hal-04612767v1
E. coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data Liam Herbert,Leila Vali,Deborah Hoyle,Giles Innocent,Iain Mckendricket al. BMC Veterinary Research, 2014, 10 (1), pp.95. ⟨10.1186/1746-6148-10-95⟩ Article dans une revue hal-04612771v1
How commercial and non-commercial swine producers move pigs in Scotland: a detailed descriptive analysis Thibaud Porphyre,Lisa Boden,Carla Correia-Gomes,Harriet Auty,George Gunnet al. BMC Veterinary Research, 2014, 10 (1), pp.140. ⟨10.1186/1746-6148-10-140⟩ Article dans une revue hal-04612766v1
Mapping brucellosis risk in communities in the Republic of Armenia Thibaud Porphyre,Ronald Jackson,Carola Sauter-Louis,David Ward,Grigor Baghyanet al. Geospatial Health, 2010, 5 (1), pp.103 - 118 Article dans une revue hal-02656857v1
Analysis of Amblyomma surveillance data in the Caribbean: Lessons for future control programmes S Ahoussou,Renaud Lancelot,B Sanford,Thibaud Porphyre,P Bartlette-Powellet al. Veterinary Parasitology, 2010, 167 (2-4), pp.327-335. ⟨10.1016/j.vetpar.2009.09.035⟩ Article dans une revue istex hal-02661422v1
Influence of contact heterogeneity on TB reproduction ratio R$_0$ in a free-living brushtail possum Trichosurus vulpecula population Thibaud Porphyre,Mark Stevenson,Ron Jackson,Joanna Mckenzie Veterinary Research, 2008, 39 (3), pp.1. ⟨10.1051/vetres:2008007⟩ Article dans une revue hal-00902923v1
A descriptive spatial analysis of bovine tuberculosis in intensively controlled cattle farms in New Zealand Thibaud Porphyre,Joanna Mckenzie,Mark Stevenson Veterinary Research, 2007, 38 (3), pp.465-479. ⟨10.1051/vetres:2007003⟩ Article dans une revue hal-00902872v1
Modelling the abundance of mosquito vectors versus flooding dynamics Thibaud Porphyre,Dj Bicout,P Sabatier Ecological Modelling, 2005, 183 (2-3), pp.173-181 Article dans une revue hal-02672981v1