Thibault LEROY Permanent researcher (CRCN), INRAE

Publications

Article dans une revue (40)

Adaptive Introgression in the Context of Climate Adaptation Thibault Leroy,Myriam Heuertz Molecular Ecology, 2026, 35 (8), ⟨10.1111/mec.70333⟩ Article dans une revue hal-05607532v1
Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics Thibault Leroy,Elise Albert,Tatiana Thouroude,Sylvie Baudino,Jean-Claude Caissardet al. Genetics, 2025, ⟨10.1093/genetics/iyaf163⟩ Article dans une revue hal-05208899v1
The Explosive Radiation of the Neotropical Tillandsia Subgenus Tillandsia (Bromeliaceae) Has Been Accompanied by Pervasive Hybridization Gil Yardeni,Michael H J Barfuss,Walter Till,Matthew R Thornton,Clara Groot Cregoet al. Systematic Biology, 2025, pp.17. ⟨10.1093/sysbio/syaf039⟩ Article dans une revue hal-05229535v1
Striking convergent selection history of wheat and barley and its potential for breeding Mamadou Dia Sow,Cristian Forestan,Caroline Pont,Peter Civan,Raffaella Battagliaet al. Nature Plants, 2025, 11, pp.2268 - 2285. ⟨10.1038/s41477-025-02128-0⟩ Article dans une revue hal-05371655v1
Les tests ADN sur miels, entre promesses et réalités Julie Birgel,Thibault Leroy Réussir Apiculture, 2025, 11, pp.26-28 Article dans une revue hal-05206020v1
Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra Sylvain Schmitt,Patrick Heuret,Valérie Troispoux,Mélanie Beraud,Jocelyn Cazalet al. Proceedings of the National Academy of Sciences of the United States of America, 2024, 121, ⟨10.1073/pnas.2313312121⟩ Article dans une revue hal-04481461v1
Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood Stefanie Wagner,Andaine Seguin-Orlando,Jean-Charles Leplé,Thibault Leroy,Céline Lalanneet al. Molecular Ecology, 2024, 33 (3), ⟨10.1111/mec.16859⟩ Article dans une revue hal-04717422v1
The genetic architecture of repeated local adaptation to climate in distantly related plants James Whiting,Tom Booker,Clément Rougeux,Brandon Lind,Pooja Singhet al. Nature Ecology & Evolution, 2024, 8 (10), pp.1933-1947. ⟨10.1038/s41559-024-02514-5⟩ Article dans une revue hal-04760888v1
Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification Antoine Kremer,Adline Delcamp,Isabelle Lesur,Stefanie Wagner,Christian Rellstabet al. Annals of Forest Science, 2024, 81 (1), pp.21. ⟨10.1186/s13595-024-01236-9⟩ Article dans une revue hal-04640959v1
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies Thibault Leroy,Pierre Faux,Benjamin Basso,Sonia Eynard,David Wragget al. Molecular Biology and Evolution, 2024, 41 (12), pp.msae249. ⟨10.1093/molbev/msae249⟩ Article dans une revue hal-04847121v1
CAM evolution is associated with gene family expansion in an explosive bromeliad radiation Clara Groot Crego,Jaqueline Hess,Gil Yardeni,Marylaure de la Harpe,Clara Priemeret al. The Plant cell, 2024, ⟨10.1101/2023.02.01.526631⟩ Article dans une revue hal-04338234v1
Drivers of genomic landscapes of differentiation across a Populus divergence gradient Huiying Shang,Martha Rendón-Anaya,Ovidiu Paun,David Field,Jaqueline Hesset al. Molecular Ecology, 2023, ⟨10.1111/mec.17034⟩ Article dans une revue hal-04138535v1
Re-evaluating the driving force behind mutations Thibault Leroy eLife, 2023, 12, ⟨10.7554/eLife.89706⟩ Article dans une revue hal-04338150v1
Allele surfing causes maladaptation in a Pacific salmon of conservation concern Quentin Rougemont,Thibault Leroy,Eric Rondeau,Ben Koop,Louis Bernatchez PLoS Genetics, 2023, 19 (9), pp.e1010918. ⟨10.1371/journal.pgen.1010918⟩ Article dans une revue hal-04222461v1
Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole‐genome sequencing Maëva Gabrielli,Thibault Leroy,Jordi Salmona,Benoit Nabholz,Borja Miláet al. Molecular Ecology, 2023, 33 (4), ⟨10.1111/mec.17243⟩ Article dans une revue hal-04668174v1
Response to Kratochvíl and Rovatsos Benoit Nabholz,Thibault Leroy Current Biology, 2022, 32 (1), pp.R30-R31. ⟨10.1016/j.cub.2021.11.067⟩ Article dans une revue hal-03521111v1
Evolution of immune genes in island birds: reduction in population sizes can explain island syndrome Mathilde Barthe,Claire Doutrelant,Rita Covas,Martim Melo,Juan Carlos Illeraet al. Peer Community Journal, 2022, 2, pp.e67. ⟨10.24072/pcjournal.186⟩ Article dans une revue hal-03886783v1
Genome‐wide evolutionary response of European oaks during the Anthropocene Dounia Saleh,Jun Chen,Jean-Charles Leplé,Thibault Leroy,Laura Truffautet al. Evolution Letters, 2022, 6 (1), pp.4-20. ⟨10.1002/evl3.269⟩ Article dans une revue hal-03553889v1
Gene expression and genetic divergence in oak species highlight adaptive genes to soil water constraints Grégoire Le Provost,Benjamin Brachi,Isabelle Lesur,Céline Lalanne,Karine Labadieet al. Plant Physiology, 2022, 190 (4), pp.2466-2483. ⟨10.1093/plphys/kiac420/6692722⟩ Article dans une revue hal-03771214v1
Spatial and Ecological Drivers of Genetic Structure in Greek Populations of Alkanna tinctoria (Boraginaceae), a Polyploid Medicinal Herb Muhammad Ahmad,Thibault Leroy,Nikos Krigas,Eva Temsch,Hanna Weiss-Schneeweisset al. Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.706574⟩ Article dans une revue hal-04338167v1
Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations Gil Yardeni,Juan Viruel,Margot Paris,Jaqueline Hess,Clara Groot Cregoet al. Molecular Ecology Resources, 2021, 22 (3), pp.927-945. ⟨10.1111/1755-0998.13523⟩ Article dans une revue hal-04338158v1
Island songbirds as windows into evolution in small populations Thibault Leroy,Marjolaine Rousselle,Marie-Ka Tilak,Aude Caizergues,Céline Scornavaccaet al. Current Biology, 2021, 31 (6), pp.1303-1310. ⟨10.1016/j.cub.2020.12.040⟩ Article dans une revue hal-03784876v1
A bird’s white-eye view on avian sex chromosome evolution Thibault Leroy,Yoann Anselmetti,Marie-Ka Tilak,Sèverine Bérard,Laura Csukonyiet al. Peer Community Journal, 2021, 1, pp.e63. ⟨10.24072/pcjournal.70⟩ Article dans une revue hal-04338161v1
Adaptive introgression as a driver of local adaptation to climate in European white oaks Thibault Leroy,Jean-Marc Louvet,Céline Lalanne,Grégoire Le Provost,Karine Labadieet al. New Phytologist, 2020, 226 (4), pp.1171-1182. ⟨10.1111/nph.16095⟩ Article dans une revue hal-02627923v1
Évolution passée et contemporaine des chênes Antoine Kremer,Christophe Plomion,Thibault Leroy,Hermine Alexandre,Laura Truffautet al. Revue forestière française, 2020, 72 (4), pp.297-318. ⟨10.20870/revforfr.2020.5331⟩ Article dans une revue hal-03206333v1
Within-island diversification in a passerine bird Maëva Gabrielli,Benoit Nabholz,Thibault Leroy,Borja Milá,Christophe Thébaud Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1923), pp.20192999. ⟨10.1098/rspb.2019.2999⟩ Article dans une revue hal-02965034v1
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon Quentin Rougemont,Jean-Sébastien Moore,Thibault Leroy,Eric Normandeau,Eric Rondeauet al. PLoS Genetics, 2020, 16 (8), pp.e1008348. ⟨10.1371/journal.pgen.1008348⟩ Article dans une revue hal-04338188v1
Tracing the ancestry of modern bread wheats Caroline Pont,Thibault Leroy,Michael Seidel,Alessandro Tondelli,Wandrille Ducheminet al. Nature Genetics, 2019, 51 (5), pp.905-911. ⟨10.1038/s41588-019-0393-z⟩ Article dans une revue hal-02154676v1
Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers Thibault Leroy,Quentin Rougemont,Jean-Luc Dupouey,Catherine Bodenes,Céline Lalanneet al. New Phytologist, 2019, online fisrt, pp.1-15. ⟨10.1111/nph.16039⟩ Article dans une revue hal-02622295v1
Hardwood tree genomics: unlocking woody plant biology Gerald A. Tuskan,Andrew T. Groover,Jeremy Schmutz,Stephen Paul Difazio,Alexander Myburget al. Frontiers in Plant Science, 2018, 9, pp.1-9. ⟨10.3389/fpls.2018.01799⟩ Article dans une revue hal-02622509v1
Oak genome reveals facets of long lifespan Christophe Plomion,Jean-Marc Aury,Joelle Amselem,Thibault Leroy,Florent Muratet al. Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩ Article dans une revue hal-01820559v1
Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation Monika Michalecka,Sylwester Masny,Thibault Leroy,Joanna Puławska BMC Evolutionary Biology, 2018, 18 (1), pp.1-15. ⟨10.1186/s12862-018-1122-4⟩ Article dans une revue hal-02624379v1
High-Throughput DNA sequencing of ancient wood Stefanie Wagner,Frédéric Lagane,Andaine Seguin-Orlando,Mikkel Schubert,Thibault Leroyet al. Molecular Ecology, 2018, 27 (5), pp.1138-1154. ⟨10.1111/mec.14514⟩ Article dans une revue hal-01783724v1
A Tchernobyl, l'Inra étudie la résistance du chêne Séverine Guillemet,Christophe Plomion,Thibault Leroy Sud Ouest, 2018, 26 août 2018, pp.16 Article dans une revue hal-02617998v1
Extensive recent secondary contacts between four European white oak species Thibault Leroy,Camille Roux,Laure Villate,Catherine Bodénès,Jonathan Romiguieret al. New Phytologist, 2017, 214 (2), pp.865-878. ⟨10.1111/nph.14413⟩ Article dans une revue hal-01608621v1
When virulence originates from nonagricultural hosts: evolutionary and epidemiological consequences of introgressions following secondary contacts in &lt;i&gt;Venturia inaequalis&lt;/i&gt; Thibault Leroy,Valérie Caffier,Jean-Marc Celton,Nicolas Anger,Charles-Eric Durelet al. New Phytologist, 2016, 210 (4), pp.1443-1452. ⟨10.1111/nph.13873⟩ Article dans une revue hal-02516628v1
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Christophe Plomion,Jean-Marc Aury,Joëlle Amselem,Tina Alaeitabar,Valérie Barbeet al. Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩ Article dans une revue istex hal-01579667v1
Emergence of new virulent populations of apple scab from nonagricultural disease reservoirs Christophe Lemaire,Marie de Gracia,Thibault Leroy,Monika Michalecka,Hanne Lindhard-Pedersenet al. New Phytologist, 2015, 209 (3), pp.1220-1229. ⟨10.1111/nph.13658⟩ Article dans une revue hal-01392705v1
Cell wall integrity and high osmolarity glycerol pathways are required for adaptation of Alternaria brassicicola to cell wall stress caused by brassicaceous indolic phytoalexins Aymeric Joubert,Nelly N. Bataillé,Claire C. Campion,Thomas Guillemette,Piétrick Hudhommeet al. Cellular Microbiology, 2011, 13 (1), pp.62-80. ⟨10.1111/j.1462-5822.2010.01520.x⟩ Article dans une revue hal-04331671v1
Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host Pierre Gladieux,Xiu-Guo Zhang,Isabel Roldan-Ruiz,Valérie Caffier,Thibault Leroyet al. Molecular Ecology, 2010, 19 (4), pp.658-674. ⟨10.1111/j.1365-294X.2009.04498.x⟩ Article dans une revue istex hal-04331642v1

Communication dans un congrès (12)

ON THE LIMITS IN USING A SINGLE REFERENCE GENOME FOR POPULATION GENOMICS: TOWARDS PAN-GENOMES Alain Vignal,Sonia E Eynard,Amira Chibani Bahi Amar,Emmanuelle Labarthe,Pierre Fauxet al. Eurbee 10th congress of apidology, Sep 2024, Tallinn, Estonia Communication dans un congrès hal-05128149v1
Genetic diversity and deleterious mutation load in Apis Thibault Leroy,Pierre Faux,Alain Vignal EurBee 10, Sep 2024, Tallinn, Estonia Communication dans un congrès hal-04848012v1
Plant mutations: slaying beautiful hypotheses by surprising evidence Niklas Tysklind,Sylvain Schmitt,Patrick Heuret,Valérie Troispoux,Mélanie Beraudet al. EVOLTREE Conference 2023 - Resilient Forests for the Future, UNITBV, Brașov, Romania, Sep 2023, Brasov, Romania. ⟨10.31926/evoltree.2023⟩ Communication dans un congrès hal-04664198v1
Is a Plant a Genetic Mosaic? An Insight into Plants' Individuality Sophie Gerber,Thibault Leroy Philosophy of Plant Biology Workshop Program http://sites.exeter.ac.uk/plantphenome/philosophy-of-plant-biology-workshop/, May 2021, Exeter, United Kingdom Communication dans un congrès hal-03282361v1
An integrated information system dedicated to oak genomics and genetics Joëlle Amselem,Nicolas Francillonne,Célia Michotey,Thomas Letellier,Jean-Marc Auryet al. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides Communication dans un congrès hal-01839185v1
Identification of recent secondary contacts between four morphologically distinct oak species Thibault Leroy,Camille Roux,Catherine Bodenes-Brezard Bodénès,Jean-Marc Aury,Antoine Kremeret al. Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p Communication dans un congrès hal-02743580v1
Oak genome sequencing and evolution Jerome J. Salse,Jean Marc Aury,Florent Murat,Sébastien Faye,Karine Labadieet al. Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p Communication dans un congrès hal-02741698v1
Annotation of the oak genome sequence and associated bioinformatic resources Joelle J. Amselem,Jean Marc Aury,Nicolas Francillonne,Tina Alaeitabar,Corinne da Silvaet al. IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p Communication dans un congrès hal-02741128v1
When Resistance genes introgressed in agrosystems act as gateways for virulent populations from the wild: the apple scab case study Christophe Lemaire,Thibault Leroy,Pierre Gladieux,Marie de Gracia,Fabien Guérinet al. Plant Resistance Sustainability International Conference, 2012, La Colle sur Loup, France Communication dans un congrès hal-03284033v1
Les barrières génétiques endogènes chez les pathogènes : la virulence-Vf de Venturia inaequalis à l’épreuve des scans génomiques Thibault Leroy,Marie de Gracia,Valérie Caffier,Nicolas Anger,Charles-Eric Durelet al. 9èmes Rencontres de Phytopathologie, Journées Jean Chevaugeon, 2012, Aussois, France Communication dans un congrès hal-03284037v1
Coupling evolutionary dynamics of fungal effectors and functional genomics : towards understanding mechanisms of Venturia inaequalis virulence and identifying durable resistance genes in apple Benoît Calmes,Thibault Leroy,Adrien Biessy,Thomas Guillemette,Mélanie Sannieret al. 28th Fungal Genetics Conference, 2011, Asilomar, United States Communication dans un congrès hal-03284027v1
Worldwide spread and evolution of pathogenicity traits of the apple scab fungus Venturia inaequalis associated with the domestication of its host Bruno Le Cam,Pierre Gladieux,Amandine Lê Van,Charles-Eric Durel,Thibault Leroyet al. Cycle de division : dans le temps et l’espace - Conférences Jacques Monod, 2010, Roscoff, France Communication dans un congrès hal-03284024v1

Poster de conférence (5)

Conserved highly heterogeneous genomic landscapes of diversity in honey bees Thibault Leroy,Pierre Faux,Sonia E Eynard,David Wragg,Alain Vignal Plant and Animal Genome (PAG 32), Jan 2024, San Diego, France Poster de conférence hal-04848302v1
Metagenomics and population genomics of honey bees through the direct sequencing of honeys Noemie Teixido,Elisa Simon,Emmanuelle Labarthe,Emilien Rottier,Benjamin B. Bassoet al. JOBIM 2024, Jun 2024, Toulouse, France Poster de conférence hal-04848078v1
Bee genome reconstruction through the sequencing of hive products Kamila Canale Tabet,Elisa Simon,Emmanuelle Labarthe,Emilien Rottier,Benjamin B. Bassoet al. Apimondia 2023, Sep 2023, Santiago, Chile Poster de conférence hal-04338919v1
From whole-genome scans for divergence to the discovery of speciation genes in oaks Thibault Leroy,Jean Marc Aury,Catherine Bodenes-Brezard Bodénès,Laure Villate,Grégoire G. Le Provostet al. 15. Congress of the European Society for Evolutionary Biology (ESEB), Aug 2015, Lausanne, Switzerland. , 1 p., 2015 Poster de conférence hal-02797182v1
The ROAD MOVIE project - Resistance Of Apple against Diseases: Mechanisms Of Virulence and Identification of Effectors Benoît Calmes,Thibault Leroy,Thomas Guillemette,Mélanie Sannier,Pascale Expertet al. 10èmes Rencontres de Phytopathologie- Mycologie, 2014, Aussois, France. 2014 Poster de conférence hal-03283786v1

Chapitre d'ouvrage (1)

Introduction to population genomics methods Thibault Leroy Molecular Plant Taxonomy, 2020 Chapitre d'ouvrage hal-04338184v1

Article de blog scientifique (1)

Changement climatique : la diversité génétique à l’origine de l’adaptation des arbres ? Thibault Leroy,Antoine Kremer,Christophe Plomion 2023 Article de blog scientifique hal-04339802v1

Autre publication scientifique (5)

Une nouvelle étude décortique l’origine des mutations génétiques Thibault Leroy,Myriam Heuertz,Niklas Tysklind,Sylvain Schmitt 2024 Autre publication scientifique hal-04693723v1
Reviews of “Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification“ Antoine Kremer,Adline Delcamp,Isabelle Lesur Kupin,Stéphanie Wagner,Christian Rellstabet al. 2024, ⟨10.17180/73QH-D818⟩ Autre publication scientifique hal-04529452v1
Mutations chez les arbres : quelles conséquences pour l’adaptation ? Chiara Hagenlocher,Myriam Heuertz,Sylvain Schmitt,Niklas Tysklind,Thibault Leroy 2024 Autre publication scientifique hal-04693730v1
Arbres et forêts, entre corps et cœurs Thibault Leroy,Sophie Gerber 2021 Autre publication scientifique hal-03936839v1
A bird’s white-eye view on neosex chromosome evolution Thibault Leroy,Yoann Anselmetti,Marie-Ka Tilak,Sèverine Bérard,Laura Csukonyiet al. 2019, ⟨10.1101/505610⟩ Autre publication scientifique hal-02155307v1

Pré-publication, Document de travail (7)

Core genes driving climate adaptation in plants Samuel Yeaman,James Whiting,Tom Booker,Clement Rougeux,Brandon Lindet al. 2023 Pré-publication, Document de travail hal-04338219v1
The explosive radiation of the Neotropical Tillandsia subgenus Tillandsia (Bromeliaceae) has been facilitated by pervasive hybridization Gil Yardeni,Michael Barfuss,Walter Till,Matthew Thornton,Clara Groot Cregoet al. 2023 Pré-publication, Document de travail hal-04338213v1
Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics Thibault Leroy,Elise Albert,Tatiana Thouroude,Sylvie Baudino,Jean-Claude Caissardet al. 2024 Pré-publication, Document de travail hal-04503438v1
Whole-genome screening for near-diagnostic genetic markers for white oak species identification in Europe Antoine Kremer,Adline Delcamp,Isabelle Lesur,Stefanie Wagner,Rellstab Christianet al. 2023 Pré-publication, Document de travail hal-04338208v1
Plant mutations: slaying beautiful hypotheses by surprising evidence Sylvain Schmitt,Patrick Heuret,Valérie Troispoux,Mélanie Beraud,Jocelyn Cazalet al. 2023 Pré-publication, Document de travail hal-04338228v1
Genome-wide evolutionary response of European oaks since the Little Ice Age Dounia Saleh,Jun Chen,Jean-Charles Leplé,Thibault Leroy,Laura Truffautet al. 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03275582v1
Adaptive introgression as a driver of local adaptation to climate in European white oaks Thibault Leroy,Jean-Marc Louvet,Céline Lalanne,Grégoire Le Provost,Karine Labadieet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788600v1

Rapport (1)

Les abeilles au cœur des transitions Mickael Henry,Denis Thiéry,Cédric Alaux,Fanny Mondet,Anne Bonjour-Dalmonet al. INRAE - Direction de la communication. 2024 Rapport hal-04635134v1

HDR (1)

Estimations et déterminants de la diversité génétique Thibault Leroy Génétique des populations [q-bio.PE]. Université d'Angers, 2022 HDR tel-04065311v1