Thierry FORNE

Publications

Article dans une revue (26)

Simultaneous profiling of transcripts and genomic regions associated with nuclear bodies using the RNA-DNA High-salt Recovered Sequence (RD-HRS) method Nathan Lecouvreur,Cosette Rebouissou,Annick Lesne,Thierry Forné Methods in Molecular Biology, 2025, Methods in Molecular Biology, 2962, pp.141-151. ⟨10.1007/978-1-0716-4726-4_10⟩ Article dans une revue hal-04711849v1
DLK1/DIO3 locus upregulation by a β-catenin-dependent enhancer drives cell proliferation and liver tumorigenesis Julie Sanceau,Lucie Poupel,Camille Joubel,Isabelle Lagoutte,Stefano Carusoet al. Molecular Therapy, 2024, ⟨10.1016/j.ymthe.2024.01.036⟩ Article dans une revue hal-04441676v1
DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias Mathias Boulanger,Mays Aqrouq,Denis Tempé,Chamseddine Kifagi,Marko Risticet al. Nucleic Acids Research, 2023, 51 (16), pp.8413-8433. ⟨10.1093/nar/gkad581⟩ Article dans une revue hal-04252815v1
Quantitative Chromosome Conformation Capture (3C-qPCR) Cosette Rebouissou,Séphora Sallis,Thierry Forné Methods in Molecular Biology, 2022, Spatial Genome Organization: Methods and Protocols, 2532, pp.3-13. ⟨10.1007/978-1-0716-2497-5_1⟩ Article dans une revue hal-03500295v1
The High-salt Recovered Sequence-sequencing (HRS-seq) method: exploring genome association with nuclear bodies Cosette Rebouissou,Marie-Odile Baudement,Thierry Forné Methods in Molecular Biology, 2022, Spatial Genome Organization: Methods and Protocols, 2532, pp.187-197. ⟨10.1007/978-1-0716-2497-5_9⟩ Article dans une revue hal-03500289v1
Endogenous Retroviral Sequences Behave as Putative Enhancers Controlling Gene Expression through HP1-Regulated Long-Range Chromatin Interactions Sébastien Calvet,Séphora Sallis,Nehmé Saksouk,Cosette Rebouissou,Catherine Teyssieret al. Cells, 2022, 11 (15), pp.2392. ⟨10.3390/cells11152392⟩ Article dans une revue hal-03745418v1
Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study Kim Philipp Jablonski,Leopold Carron,Julien Mozziconacci,Thierry Forné,Marc-Thorsten Hüttet al. Human Genomics, 2022, 16 (1), pp.2. ⟨10.1186/s40246-022-00375-2⟩ Article dans une revue hal-03525806v1
Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster Kathryn Vaillancourt,Jennie Yang,Gary Chen,Volodymyr Yerko,Jean-François Thérouxet al. Molecular Psychiatry, 2021, 26, pp.3134-3151. ⟨10.1038/s41380-020-00909-x⟩ Article dans une revue hal-02989971v1
Hypoxia differently modulates the release of mitochondrial and nuclear DNA Amaëlle Otandault,Jean-Daniel Abraham,Zahra Al Amir Dache,Abdelnaby Khalyfa,Isabelle Jariel-Encontreet al. British Journal of Cancer, 2020, 122, pp.715 - 725. ⟨10.1038/s41416-019-0716-y⟩ Article dans une revue hal-02504555v2
Exploring Mammalian Genome within Phase-Separated Nuclear Bodies: Experimental Methods and Implications for Gene Expression Annick Lesne,Marie-Odile Baudement,Cosette Rebouissou,Thierry Forné Genes, 2019, 10 (12), pp.1049. ⟨10.3390/genes10121049⟩ Article dans une revue hal-02422755v1
High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies Marie Baudement,Axel Cournac,Franck Court,Marie Seveno,Hugues Parrinelloet al. Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩ Article dans une revue hal-01912447v1
EHMT2 directs DNA methylation for efficient gene silencing in mouse embryos Ghislain Auclair,Julie Borgel,Lionel Sanz,Judith Vallet,Sylvain Guibertet al. Genome Research, 2016, 26 (2), pp.192--202. ⟨10.1101/gr.198291.115⟩ Article dans une revue hal-02187322v1
The physics of cancer: The role of epigenetics and chromosome conformation in cancer progression Oleg B Naimark,Aleksandr S Nikitiuk,Marie-Odile Baudement,Thierry Forné,Annick Lesne AIP Conference Proceedings, 2016, International Conference on Physics of Cancer, 1760 (1), pp.020051. ⟨10.1063/1.4960270⟩ Article dans une revue (article de synthèse) hal-04666603v1
Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains Vuthy Ea,Tom Sexton,Thierry Gostan,Laurie Herviou,Marie-Odile Baudementet al. BMC Genomics, 2015, 16, pp.607. ⟨10.1186/s12864-015-1786-8⟩ Article dans une revue hal-01212952v1
Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization Vuthy Ea,Marie-Odile Baudement,Annick Lesne,Thierry Forné Genes, 2015, 6 (3), pp.734-750. ⟨10.3390/genes6030734⟩ Article dans une revue hal-01264317v1
Chromatin fiber allostery and the epigenetic code Annick Lesne,Nicolas Foray,Guy Cathala,Thierry Forné,Hua Wonget al. Journal of Physics: Condensed Matter, 2015, 27 (6), pp.064114. ⟨10.1088/0953-8984/27/6/064114⟩ Article dans une revue hal-01110488v1
Finite-Size Conformational Transitions: A Unifying Concept Underlying Chromosome Dynamics Bertrand R Caré,Pascal Carrivain,Thierry Forné,Jean-Marc Victor,Annick Lesne Communications in Theoretical Physics, 2014, 62 (4), pp.607-616. ⟨10.1088/0253-6102/62/4/18⟩ Article dans une revue hal-02948467v1
Myod and H19-Igf2 locus interactions are required for diaphragm formation in the mouse M. Borensztein,Paul Monnier,Franck Court,Yoann Louault,Marie-Anne Ripocheet al. Development (Cambridge, England), 2013, 140 (6), pp.1231--9. ⟨10.1242/dev.084665⟩ Article dans une revue hal-02191602v1
Global profiling of DNA methylation erasure in mouse primordial germ cells Sylvain Guibert,Thierry Forné,Michaël Weber Genome Research, 2012, 22 (4), pp.633--41. ⟨10.1101/gr.130997.111⟩ Article dans une revue hal-02193214v1
Modulated contact frequencies at gene-rich loci support a statistical helix model for mammalian chromatin organization. Franck Court,Julie Miro,Caroline Braem,Marie-Noëlle Lelay-Taha,Audrey Brisebarreet al. Genome Biology, 2011, 12 (5), pp.R42. ⟨10.1186/gb-2011-12-5-r42⟩ Article dans une revue inserm-00605349v1
Long-range chromatin interactions at the mouse Igf2/H19 locus reveal a novel paternally expressed long non-coding RNA Franck Court,Marion Baniol,Hélène Hagège,Julie Sandrine Petit,Marie-Noëlle Lelay-Tahaet al. Nucleic Acids Research, 2011, 39 (14), pp.5893 - 5906. ⟨10.1093/nar/gkr209⟩ Article dans une revue hal-01685883v1
Genomic matrix attachment region and chromosome conformation capture quantitative real time PCR assays identify novel putative regulatory elements at the imprinted Dlk1/Gtl2 locus Caroline Braem,Bénédicte Recolin,Rebecca C Rancourt,Christopher Angiolini,Pauline Barthèset al. Journal of Biological Chemistry, 2008, 283 (27), pp.18612-18620. ⟨10.1074/jbc.M801883200⟩ Article dans une revue hal-01600983v1
Quantitative analysis of chromosome conformation capture assays (3C-qPCR) Hélène Hagège,Petra Klous,Caroline Braem,Erik Splinter,Job Dekkeret al. Nature Protocols, 2007, 2 (7), pp.1722 - 1733. ⟨10.1038/nprot.2007.243⟩ Article dans une revue hal-01685886v1
Genomic imprinting controls matrix attachment regions in the Igf2 gene. Michael Weber,Hélène Hagège,Adele Murrell,Claude Brunel,Wolf Reiket al. Molecular and Cellular Biology, 2003, 23, pp.8953-9. ⟨10.1128/MCB.23.24.8953-8959.2003⟩ Article dans une revue hal-01685920v1
A real-time polymerase chain reaction assay for quantification of allele ratios and correction of amplification bias. Michael Weber,Hélène Hagège,Georges Lutfalla,Luisa Dandolo,Claude Brunelet al. Analytical Biochemistry, 2003, 320, pp.252-8. ⟨10.1016/s0003-2697(03)00396-8⟩ Article dans une revue istex hal-01685917v1
Disruption of Base-Paired U4-Center-Dot-U6 Small Nuclear Rnas Induced by Mammalian Heterogeneous Nuclear Ribonucleoprotein-C Protein Thierry Forné,Ferdinand Rossi,Emmanuel Labourier,Etienne Antoine,Guy Cathalaet al. Journal of Biological Chemistry, 1995, 270 (27), pp.16476--16481. ⟨10.1074/jbc.270.27.16476⟩ Article dans une revue hal-02193512v1

Chapitre d'ouvrage (3)

Empreinte génomique parentale : découverte et mécanismes de régulation Thierry Forné Épigénétique. Mécanismes moléculaires, biologie du développement et réponses à l’environnement, chapitre 4, éditions Quae, pp.67-82, 2024, Synthèses, 978-2-7592-3769-2. ⟨10.35690/978-2-7592-3770-8⟩ Chapitre d'ouvrage hal-04765382v1
Chromatin and DNA Dynamics in Mouse Models of Liver Cancers Julie Sanceau,Thierry Forné,Sophie Chantalat,Angélique Gougelet Liver Carcinogenesis, 2769, Springer US, pp.167-187, 2024, Methods in Molecular Biology, ⟨10.1007/978-1-0716-3694-7_13⟩ Chapitre d'ouvrage hal-04717291v1
Epigenetic regulation of mammalian imprinted genes: from primary to functional imprints. Michael Weber,Hélène Hagège,Nathalie Aptel,Claude Brunel,Guy Cathalaet al. Philippe Jeanteur. Progress in Molecular and Subcellular Biology, 38, Springer-Verlag, pp.207-36, 2005, Epigenetics and Chromatin Chapitre d'ouvrage hal-01685907v1

Pré-publication, Document de travail (1)

SUMOylation controls the rapid transcriptional reprogramming induced by anthracyclines in Acute Myeloid Leukemias Mathias Boulanger,Chamseddine Kifagi,Marko Ristic,Ludovic Gabellier,Denis Tempéet al. 2022 Pré-publication, Document de travail hal-03759840v1

Communication dans un congrès (1)

NEW INSIGHTS INTO THE IMPRINTED MOUSE Igf2/H19 LOCUS BY 3C-qPCR METHOD Franck Court,Marion Baniol,Hélène Hagège,Julie Borgel,Jacques Pietteet al. Mosbacher Kolloquium 2008, 2008, Mosbach, Germany. pp.230 - 237, ⟨10.1240/sav_gbm_2008_m_002176⟩ Communication dans un congrès hal-01685906v1