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Thomas Bigot

Research Engineer

Research domains

Bioinformatics [q-bio.QM]


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Performance of clinical metagenomics in France: a prospective observational study

Jacques Fourgeaud , Béatrice Regnault , Vichita Ok , Nicolas da Rocha , Émilie Sitterlé
The Lancet Microbe, 2023, ⟨10.1016/s2666-5247(23)00244-6⟩
Journal articles pasteur-04320314v1
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A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep

Bianca Elena Bratuleanu , Cristian Raileanu , Delphine Chrétien , Pablo Guardado-Calvo , Thomas Bigot
Microorganisms, 2023, 11 (1), pp.209. ⟨10.3390/microorganisms11010209⟩
Journal articles pasteur-04103246v1

Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses

Bianca Elena Bratuleanu , Cristian Răileanu , Amal Bennouna , Delphine Chretien , Thomas Bigot
Transboundary and emerging diseases, 2023, 2023, pp.1-14. ⟨10.1155/2023/6661723⟩
Journal articles hal-04314227v1
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Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

Amal Bennouna , Michael Luciano Tantely , Vololoniaina Raharinosy , Soa Fy Andriamandimby , Thomas Bigot
Viruses, 2023, 15 (9), pp.1852. ⟨10.3390/v15091852⟩
Journal articles pasteur-04228698v1
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Virus Pop—Expanding Viral Databases by Protein Sequence Simulation

Julia Kende , Massimiliano Bonomi , Sarah Temmam , Béatrice Regnault , Philippe Pérot
Viruses, 2023, 15 (6), pp.1227. ⟨10.3390/v15061227⟩
Journal articles pasteur-04106241v1
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SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19

Sarah Temmam , Xavier Montagutelli , Cécile Herate , Flora Donati , Béatrice Regnault
EMBO Reports, 2023, 24 (4), pp.e56055. ⟨10.15252/embr.202256055⟩
Journal articles pasteur-04072738v1
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Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence

Sarah Temmam , Tran Cong Tu , Béatrice Regnault , Massimiliano Bonomi , Delphine Chrétien
Viruses, 2023, 15 (9), pp.1897. ⟨10.3390/v15091897⟩
Journal articles pasteur-04228724v1
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Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta

Bianca Elena Bratuleanu , Sarah Temmam , Sandie Munier , Delphine Chrétien , Thomas Bigot
Frontiers in Veterinary Science, 2022, 9, pp.863814. ⟨10.3389/fvets.2022.863814⟩
Journal articles pasteur-03661214v1
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Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery

Philippe Pérot , Thomas Bigot , Sarah Temmam , Béatrice Regnault , Marc Eloit
Viruses, 2022, 14 (9), pp.1990. ⟨10.3390/v14091990⟩
Journal articles pasteur-03773653v1
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Bat coronaviruses related to SARS-CoV-2 and infectious for human cells

Sarah Temmam , Khamsing Vongphayloth , Eduard Baquero , Sandie Munier , Massimiliano Bonomi
Nature, 2022, 604 (7905), pp.330-336. ⟨10.1038/s41586-022-04532-4⟩
Journal articles pasteur-03661247v1
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Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020

Isabelle Sermet-Gaudelus , Sarah Temmam , Christèle Huon , Sylvie Behillil , Vincent Gajdos
Eurosurveillance, 2021, 26 (13), pp.2001782. ⟨10.2807/1560-7917.ES.2021.26.13.2001782⟩
Journal articles hal-03205795v1
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SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020

Arnaud Fontanet , Laura Tondeur , Rebecca Grant , Sarah Temmam , Yoann Madec
Eurosurveillance, 2021, 26 (15), pp.2001695. ⟨10.2807/⟩
Journal articles pasteur-03236257v1
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Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results

Béatrice Regnault , Thomas Bigot , Laurence Ma , Philippe Pérot , Sarah Temmam
Viruses, 2021, 13 (2), pp.253. ⟨10.3390/v13020253⟩
Journal articles pasteur-03152677v1
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Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia

Philippe Perot , Franck Bielle , Thomas Bigot , Vincent Foulongne , Karine Bolloré
Clinical Infectious Diseases, 2021, 72 (10), pp.1701-1708. ⟨10.1093/cid/ciaa308⟩
Journal articles pasteur-02863210v1

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health

Bianca Elena Bratuleanu , Sarah Temmam , Delphine Chrétien , Béatrice Regnault , Philippe Pérot
Transboundary and emerging diseases, 2021, ⟨10.1111/tbed.14105⟩
Journal articles pasteur-03255650v1
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Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes

Lotty Birnberg , Sarah Temmam , Carles Aranda , Florencia Correa-Fiz , Sandra Talavera
Viruses, 2020, 12, ⟨10.3390/v12030274⟩
Journal articles pasteur-02496954v1
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RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles

Mathilde Gondard , Sarah Temmam , Elodie Devillers , Valérie Pinarello , Thomas Bigot
Viruses, 2020, 12 (2), ⟨10.3390/v12020144⟩
Journal articles pasteur-02464664v1
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Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization

Sarah Temmam , Vibol Hul , Thomas Bigot , Mael Bessaud , Delphine Chrétien
Infection, Genetics and Evolution, 2020, 78, 5 p. ⟨10.1016/j.meegid.2019.104130⟩
Journal articles hal-02625131v1
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RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved]

Thomas Bigot , Sarah Temmam , Philippe Pérot , Marc Eloit
F1000Research, 2020, 8, pp.530. ⟨10.12688/f1000research.18776.2⟩
Journal articles pasteur-02946473v1
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A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools

Sarah Temmam , Vibol Hul , Thomas Bigot , Thavry Hoem , Christopher Gorman
Microbiology Resource Announcements, 2019, 8 (15), pp.e01662-18. ⟨10.1128/MRA.01662-18⟩
Journal articles pasteur-02263507v1
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Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

Thomas Bigot , Julien Guglielmini , Alexis Criscuolo
Data in Brief, 2019, 25, pp.104212. ⟨10.1016/j.dib.2019.104212⟩
Journal articles pasteur-03265225v1
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Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses

Sarah Temmam , Thomas Bigot , Delphine Chrétien , Mathilde Gondard , Philippe Pérot
MSphere, 2019, 4 (6), pp.e00645-19. ⟨10.1128/mSphere.00645-19⟩
Journal articles pasteur-02355017v1
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Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies

Sarah Temmam , Khamsing Vongphayloth , Jeffrey C. Hertz , Ian Sutherland , Bounsavane Douangboubpha
Microbiology Resource Announcements, 2019, 8 (46), pp.e00733-19. ⟨10.1128/MRA.00733-19⟩
Journal articles pasteur-03240194v1
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Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand

Sarah Temmam , Delphine Chrétien , Thomas Bigot , Evelyne Dufour , Stéphane Petres
Frontiers in Microbiology, 2019, 10, pp.2315. ⟨10.3389/fmicb.2019.02315⟩
Journal articles pasteur-02318851v1
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Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Florent Lassalle , Rémi Planel , Simon Penel , David Chapulliot , Valérie Barbe
Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩
Journal articles hal-01913841v1
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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution

Laurent Gueguen , Sylvain Gaillard , Bastien Boussau , Manolo Gouy , Mathieu Groussin
Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩
Journal articles hal-01209906v1

TPMS: a set of utilities for querying collections of gene trees.

Thomas Bigot , Vincent Daubin , Florent Lassalle , Guy Perrière
BMC Bioinformatics, 2013, 14, pp.109. ⟨10.1186/1471-2105-14-109⟩
Journal articles hal-00972257v1
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Recherche automatisée de motifs dans les arbres phylogénétiques

Thomas Bigot
Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. Français. ⟨NNT : 2013LYO10085⟩
Theses tel-01044878v1