Thomas Bigot Ingénieur de Recherche

Publications

Article dans une revue (29)

Molecular detection of human-derived Jingmenvirus in multiple mosquito species from Yaoundé, Cameroon Lisandru Capai,Giovanni Begliomini,Basile Kamgang,Souand Mohamed Ali,Sarah Temmamet al. Parasites & Vectors, In press, ⟨10.1186/s13071-025-07111-4⟩ Article dans une revue pasteur-05421529v1
Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe Bianca Elena Bratuleanu,Delphine Chrétien,Thomas Bigot,Béatrice Regnault,Philippe Pérotet al. Parasites & Vectors, 2024, 17 (1), pp.482. ⟨10.1186/s13071-024-06557-2⟩ Article dans une revue pasteur-05073449v1
Performance of clinical metagenomics in France: a prospective observational study Jacques Fourgeaud,Béatrice Regnault,Vichita Ok,Nicolas da Rocha,Émilie Sitterléet al. The Lancet Microbe, 2023, ⟨10.1016/s2666-5247(23)00244-6⟩ Article dans une revue pasteur-04320314v1
A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep Bianca Elena Bratuleanu,Cristian Raileanu,Delphine Chrétien,Pablo Guardado-Calvo,Thomas Bigotet al. Microorganisms, 2023, 11 (1), pp.209. ⟨10.3390/microorganisms11010209⟩ Article dans une revue pasteur-04103246v1
Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar Amal Bennouna,Michael Luciano Tantely,Vololoniaina Raharinosy,Soa Fy Andriamandimby,Thomas Bigotet al. Viruses, 2023, 15 (9), pp.1852. ⟨10.3390/v15091852⟩ Article dans une revue pasteur-04228698v1
Virus Pop—Expanding Viral Databases by Protein Sequence Simulation Julia Kende,Massimiliano Bonomi,Sarah Temmam,Béatrice Regnault,Philippe Pérotet al. Viruses, 2023, 15 (6), pp.1227. ⟨10.3390/v15061227⟩ Article dans une revue pasteur-04106241v1
SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19 Sarah Temmam,Xavier Montagutelli,Cécile Herate,Flora Donati,Béatrice Regnaultet al. EMBO Reports, 2023, 24 (4), pp.e56055. ⟨10.15252/embr.202256055⟩ Article dans une revue pasteur-04072738v1
Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence Sarah Temmam,Tran Cong Tu,Béatrice Regnault,Massimiliano Bonomi,Delphine Chrétienet al. Viruses, 2023, 15 (9), pp.1897. ⟨10.3390/v15091897⟩ Article dans une revue pasteur-04228724v1
Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses Bianca Elena Bratuleanu,Cristian Răileanu,Amal Bennouna,Delphine Chretien,Thomas Bigotet al. Transboundary and emerging diseases, 2023, 2023, pp.6661723. ⟨10.1155/2023/6661723⟩ Article dans une revue hal-04314227v1
Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery Philippe Pérot,Thomas Bigot,Sarah Temmam,Béatrice Regnault,Marc Eloit Viruses, 2022, 14 (9), pp.1990. ⟨10.3390/v14091990⟩ Article dans une revue pasteur-03773653v1
Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta Bianca Elena Bratuleanu,Sarah Temmam,Sandie Munier,Delphine Chrétien,Thomas Bigotet al. Frontiers in Veterinary Science, 2022, 9, pp.863814. ⟨10.3389/fvets.2022.863814⟩ Article dans une revue pasteur-03661214v1
Bat coronaviruses related to SARS-CoV-2 and infectious for human cells Sarah Temmam,Khamsing Vongphayloth,Eduard Baquero,Sandie Munier,Massimiliano Bonomiet al. Nature, 2022, 604 (7905), pp.330-336. ⟨10.1038/s41586-022-04532-4⟩ Article dans une revue pasteur-03661247v1
SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020 Arnaud Fontanet,Laura Tondeur,Rebecca Grant,Sarah Temmam,Yoann Madecet al. Eurosurveillance, 2021, 26 (15), pp.2001695. ⟨10.2807/1560-7917.es.2021.26.15.2001695⟩ Article dans une revue pasteur-03236257v1
The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health Bianca Elena Bratuleanu,Sarah Temmam,Delphine Chrétien,Béatrice Regnault,Philippe Pérotet al. Transboundary and emerging diseases, 2021, ⟨10.1111/tbed.14105⟩ Article dans une revue pasteur-03255650v1
Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia Philippe Perot,Franck Bielle,Thomas Bigot,Vincent Foulongne,Karine Bolloréet al. Clinical Infectious Diseases, 2021, 72 (10), pp.1701-1708. ⟨10.1093/cid/ciaa308⟩ Article dans une revue pasteur-02863210v1
Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results Béatrice Regnault,Thomas Bigot,Laurence Ma,Philippe Pérot,Sarah Temmamet al. Viruses, 2021, 13 (2), pp.253. ⟨10.3390/v13020253⟩ Article dans une revue pasteur-03152677v1
Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020 Isabelle Sermet-Gaudelus,Sarah Temmam,Christèle Huon,Sylvie Behillil,Vincent Gajdoset al. Eurosurveillance, 2021, 26 (13), pp.2001782. ⟨10.2807/1560-7917.ES.2021.26.13.2001782⟩ Article dans une revue hal-03205795v1
Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes Lotty Birnberg,Sarah Temmam,Carles Aranda,Florencia Correa-Fiz,Sandra Talaveraet al. Viruses, 2020, 12, ⟨10.3390/v12030274⟩ Article dans une revue pasteur-02496954v1
Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization Sarah Temmam,Vibol Hul,Thomas Bigot,Mael Bessaud,Delphine Chrétienet al. Infection, Genetics and Evolution, 2020, 78, 5 p. ⟨10.1016/j.meegid.2019.104130⟩ Article dans une revue hal-02625131v1
RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles Mathilde Gondard,Sarah Temmam,Elodie Devillers,Valérie Pinarello,Thomas Bigotet al. Viruses, 2020, 12 (2), ⟨10.3390/v12020144⟩ Article dans une revue pasteur-02464664v1
RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved] Thomas Bigot,Sarah Temmam,Philippe Pérot,Marc Eloit F1000Research, 2020, 8, pp.530. ⟨10.12688/f1000research.18776.2⟩ Article dans une revue pasteur-02946473v1
A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools Sarah Temmam,Vibol Hul,Thomas Bigot,Thavry Hoem,Christopher Gormanet al. Microbiology Resource Announcements, 2019, 8 (15), pp.e01662-18. ⟨10.1128/MRA.01662-18⟩ Article dans une revue pasteur-02263507v1
Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences Thomas Bigot,Julien Guglielmini,Alexis Criscuolo Data in Brief, 2019, 25, pp.104212. ⟨10.1016/j.dib.2019.104212⟩ Article dans une revue pasteur-03265225v1
Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand Sarah Temmam,Delphine Chrétien,Thomas Bigot,Evelyne Dufour,Stéphane Petreset al. Frontiers in Microbiology, 2019, 10, pp.2315. ⟨10.3389/fmicb.2019.02315⟩ Article dans une revue pasteur-02318851v1
Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies Sarah Temmam,Khamsing Vongphayloth,Jeffrey C. Hertz,Ian Sutherland,Bounsavane Douangboubphaet al. Microbiology Resource Announcements, 2019, 8 (46), pp.e00733-19. ⟨10.1128/MRA.00733-19⟩ Article dans une revue pasteur-03240194v1
Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses Sarah Temmam,Thomas Bigot,Delphine Chrétien,Mathilde Gondard,Philippe Pérotet al. MSphere, 2019, 4 (6), pp.e00645-19. ⟨10.1128/mSphere.00645-19⟩ Article dans une revue pasteur-02355017v1
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium Florent Lassalle,Rémi Planel,Simon Penel,David Chapulliot,Valérie Barbeet al. Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩ Article dans une revue hal-01913841v1
TPMS: a set of utilities for querying collections of gene trees. Thomas Bigot,Vincent Daubin,Florent Lassalle,Guy Perrière BMC Bioinformatics, 2013, 14, pp.109. ⟨10.1186/1471-2105-14-109⟩ Article dans une revue hal-00972257v1
Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution Laurent Gueguen,Sylvain Gaillard,Bastien Boussau,Manolo Gouy,Mathieu Groussinet al. Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩ Article dans une revue hal-01209906v1

Communication dans un congrès (4)

Current Knowledge of Exposure to Tick-borne Pathogens among Rural Population in Cambodia Dr Janin Nouhin,Dr Pierre-Olivier Maquart,Ms Limmey Khun,Ms Saoya Sen,Ms Phalla Yet al. One Health, Dec 2024, Cape Town, South Africa. pp.107419, ⟨10.1016/j.ijid.2024.107419⟩ Communication dans un congrès hal-05070260v1
De nouveaux coronavirus de chauve-souris similaires à SARS-CoV-2 éclairent l'origine de la pandémie de COVID-19 Sarah Temmam,Khamsing Vongphayloth,Eduard Baquero Salazar,Sandie Munier,Massimiliano Bonomiet al. Journées Francophones de Virologie, Apr 2022, Strasbourg, France Communication dans un congrès pasteur-03663296v1
Une infection antérieure par des coronavirus saisonniers n’empêche pas la COVID-19 chez les enfants. Isabelle Sermet-Gaudelus,Sarah Temmam,Christèle Huon,Sylvie Behillil,Vincent Gajdoset al. Journées Francophones de Virologie, Apr 2021, Montpellier, France Communication dans un congrès pasteur-03663260v1
Tpms: a Tree Pattern-matching Utility for Querying Gene Trees Collections Thomas Bigot,Vincent Daubin,G. Perrière Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2011, Paris, France. pp.111-112 Communication dans un congrès hal-02069428v1

Poster de conférence (6)

Horseshoe bats from Southeast Asia host a high diversity of Sarbecoviruses, including close ancestors of SARS-CoV-2 Sarah Temmam,Khamsing Vongphayloth,Tran Cong Tu,Béatrice Regnault,Massimiliano Bonomiet al. 8th World One Health Congress, Sep 2024, Cape Town / Le Cap, South Africa Poster de conférence pasteur-04727508v1
Virus Pop: Expanding viral databases by protein sequence simulation Julia Kende,Massimiliano Bonomi,Sarah Temmam,Philippe Pérot,Béatrice Regnaultet al. International Conference on Clinical Metagenomics 2023, Nov 2023, Genève (Suisse), Switzerland Poster de conférence pasteur-04337999v1
Microseek: an innovative approach to unraveling clinical metagenomic secrets Thomas Bigot,Philippe Pérot,Sarah Temmam,Béatrice Regnault,Marc Eloit 8th International Conference on Clinical Metagenomics, Nov 2023, Geneva, Switzerland Poster de conférence pasteur-04337913v1
Necker-Pasteur Clinical Metagenomics: Part 2. Contribution to Pathogen Discovery Philippe Pérot,Béatrice Regnault,Franck Bielle,Jacques Fourgeaud,Éric Troadecet al. 6th International Conference on Clinical Metagenomics, Oct 2021, Geneva, Switzerland. Poster de conférence pasteur-03467165v1
Identification d’un nouvel arbovirus neurotrope en France : le virus Umbre Philippe Pérot,Franck Bielle,Thomas Bigot,Vincent Foulongne,Karine Bolloréet al. 23. Journées Francophones de Virologie, Apr 2021, Montpellier, France Poster de conférence pasteur-03467121v1
Role of pathogens in life-threatening encephalitides analyzed by untargeted transcriptomic analysis of pathological brain tissues Philippe Perot,Danielle Seilhean,Franck Bielle,Delphine Chrétien,Thomas Bigotet al. 3rd International Conference on Clinical Metagnomics, Oct 2018, Genève, Switzerland. Poster de conférence pasteur-01887124v1

Chapitre d'ouvrage (1)

Metagenomics for Brain Biopsy Samples of Infectious Lesions Philippe Pérot,Franck Bielle,Isabelle Plu,Thomas Bigot,Danielle Seilheanet al. Mathon, B. Brain Biopsies, 223, Springer US, pp.145-157, 2025, Neuromethods, 978-1-0716-4514-7. ⟨10.1007/978-1-0716-4514-7_9⟩ Chapitre d'ouvrage pasteur-05073547v1

Pré-publication, Document de travail (3)

Fluke-borne viruses are a risk factor for diseases caused by carcinogenic trematodes Sujittra Chaiyadet,Tom Roblin,Anais Fauchois,Sarah Temmam,David Hinget al. 2025 Pré-publication, Document de travail hal-05351994v1
A new potential mosquito-borne virus: detection of Human-derived Jingmenvirus in several-species of mosquitoes from Yaoundé, Cameroon Lisandru Capai,Giovanni Begliomini,Basile Kamgang,Souand Mohamed Ali,Sarah Temmamet al. 2025 Pré-publication, Document de travail hal-05351981v1
Coronaviruses with a SARS-CoV-2-like receptor-binding domain allowing ACE2-mediated entry into human cells isolated from bats of Indochinese peninsula Sarah Temmam,Khamsing Vongphayloth,Eduard Baquero Salazar,Sandie Munier,Massimiliano Bonomiet al. 2021 Pré-publication, Document de travail hal-03417488v1

Thèse (1)

Recherche automatisée de motifs dans les arbres phylogénétiques Thomas Bigot Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. Français. ⟨NNT : 2013LYO10085⟩ Thèse tel-01044878v1