Thomas Blein

Publications

Article dans une revue (40)

The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots through direct regulation of LAZY and TAC genes Andana Barrios,Nicolas Gaggion,Natanael Mansilla,Leandro Lucero,Thomas Bleinet al. The Plant Journal, 2025, 121 (5), pp.e70016. ⟨10.1101/2023.04.26.538431⟩ Article dans une revue hal-04299899v1
From non-coding to chromatin regulators: VIVIpary and the rise of lncRNAs in plant biology Pablo Mammi,Thomas Blein Molecular Plant, 2025, 18 (8), pp.1259-1261. ⟨10.1016/j.molp.2025.06.011⟩ Article dans une revue hal-05409919v1
Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production Taline Elmayan,Thomas Blein,Emilie Elvira-Matelot,Ivan Le Masson,Aurélie Christet al. Nature Communications, 2025, 16 (1), pp.2978. ⟨10.1038/s41467-025-57394-5⟩ Article dans une revue hal-05012332v1
Subunit 3 of the SUPERKILLER complex mediates microRNA172-directed cleavage of Nodule Number Control 1 in Medicago truncatula Soledad Traubenik,Mauricio Alberto Reynoso,Francisco Sánchez-Rodríguez,Milagros Yacullo,Aurelie Christet al. Plant Physiology, 2025, 199 (2), pp.kiaf425. ⟨10.1093/plphys/kiaf425⟩ Article dans une revue hal-05409917v1
From environmental responses to adaptation: the roles of plant lncRNAs Soledad Traubenik,Céline Charon,Thomas Blein Plant Physiology, 2024, 195 (1), pp.232-244. ⟨10.1093/plphys/kiae034⟩ Article dans une revue hal-04601515v1
The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants Luca Argirò,Carole Laffont,Corentin Moreau,Carol Moreau,Yangyang Suet al. Journal of Experimental Botany, 2024, 75 (18), pp.5667-5680. ⟨10.1093/jxb/erae281⟩ Article dans une revue hal-04678694v1
Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots Li Liu,Michel Heidecker,Thomas Depuydt,Nicolas Manosalva Perez,Martin Crespiet al. Plant Physiology, 2023, 193 (3), pp.1933-1953. ⟨10.1093/plphys/kiad360⟩ Article dans une revue hal-04299815v1
The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis Thomas Roulé,María Florencia Legascue,Andana Barrios,Nicolás Gaggion,Martin Crespiet al. IUBMB Life, 2023, 75 (10), pp.880-892. ⟨10.1002/iub.2761⟩ Article dans une revue hal-04299803v1
Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing Jérémie Bazin,Emilie Elvira-Matelot,Thomas Blein,Vincent Jauvion,Nathalie Bouteilleret al. The Plant cell, 2023, 35 (6), pp.1917-1935. ⟨10.1093/plcell/koad091⟩ Article dans une revue hal-04298436v1
The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants Camille Fonouni-Farde,Aurélie Christ,Thomas Blein,María Florencia Legascue,Lucía Ferreroet al. Genome Biology, 2022, 23 (1), pp.181. ⟨10.1186/s13059-022-02750-7⟩ Article dans une revue hal-03768549v1
Variable selection in sparse GLARMA models Marina Gomtsyan,Céline Lévy-Leduc,Sarah Ouadah,Laure Sansonnet,Thomas Blein Statistics, 2022, 56 (4), pp.755-784. ⟨10.1080/02331888.2022.2090943⟩ Article dans une revue hal-03763853v1
The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA Thomas Roulé,Aurelie Christ,Nosheen Hussain,Ying Huang,Caroline Hartmannet al. Molecular Plant, 2022, 15 (5), pp.1-58. ⟨10.1016/j.molp.2022.02.007⟩ Article dans une revue hal-03698779v1
Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation Constanza Chialva,Thomas Blein,Martin Crespi,Diego Lijavetzky Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-83514-4⟩ Article dans une revue hal-03324569v1
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture Nicolás Gaggion,Federico Ariel,Vladimir Daric,Eric Lambert,Simon Legendreet al. GigaScience, 2021, 10 (7), pp.giab052. ⟨10.1093/gigascience/giab052⟩ Article dans une revue hal-03324566v1
Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing Marine Guilcher,Arnaud Liehrmann,Chloé Seyman,Thomas Blein,Guillem Rigaillet al. International Journal of Molecular Sciences, 2021, 22 (20), pp.1-15. ⟨10.3390/ijms222011297⟩ Article dans une revue hal-03343771v1
Regulatory long non-coding RNAs in root growth and development Thomas Roulé,Martin Crespi,Thomas Blein Biochemical Society Transactions, 2021, pp.1-18. ⟨10.1042/BST20210743⟩ Article dans une revue hal-03555826v1
Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation Thomas Blein,Coline Balzergue,Thomas Roulé,Marc Gabriel,Laetitia Scalisiet al. Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩ Article dans une revue cea-02962421v1
Wheat chromatin architecture is organized in genome territories and transcription factories Lorenzo Concia,Alaguraj Veluchamy,Juan Ramirez-Prado,Azahara Martin-Ramirez,Ying Huanget al. Genome Biology, 2020, 21 (1), pp.1-20. ⟨10.1186/s13059-020-01998-1⟩ Article dans une revue hal-02571325v1
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Barbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Article dans une revue hal-02460008v1
R-Loop Mediated trans Action of the APOLO Long Noncoding RNA Federico Ariel,Leandro Lucero,Aurelie Christ,Maria Florencia Mammarella,Teddy Jeguet al. Molecular Cell, 2020, 77 (5), pp.1055-1065. ⟨10.1016/j.molcel.2019.12.015⟩ Article dans une revue hal-02964078v1
GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes Soonkap Kim,Sophie Piquerez,Juan Ramirez-Prado,Emmanouil Mastorakis,Alaguraj Veluchamyet al. Nucleic Acids Research, 2020, 48 (11), pp.5953-5966. ⟨10.1093/nar/gkaa369⟩ Article dans une revue hal-02889481v1
The Arabidopsis lnc RNA ASCO modulates the transcriptome through interaction with splicing factors Richard Rigo,Jérémie Bazin,Natali Romero‐barrios,Michaël Moison,Leandro Luceroet al. EMBO Reports, 2020, 21 (5), pp.1-19. ⟨10.15252/embr.201948977⟩ Article dans une revue hal-02991642v1
Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis Jérémie Bazin,Kiruthiga G Mariappan,Yunhe Jiang,Thomas Blein,Ronny Voelzet al. PLoS Pathogens, 2020, 16 (4), pp.e1008401. ⟨10.1371/journal.ppat.1008401⟩ Article dans une revue hal-03015159v1
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Bárbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Article dans une revue hal-04721448v1
Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses Jérémie Bazin,Natali Romero,Richard Rigo,Céline Charon,Thomas Bleinet al. Frontiers in Plant Science, 2018, 9, pp.1209. ⟨10.3389/fpls.2018.01209⟩ Article dans une revue hal-02379622v1
Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions Waleed Albihlal,Irabonosi Obomighie,Thomas Blein,Ramona Persad,Igor Chernukhinet al. Journal of Experimental Botany, 2018, 69 (11), pp.2847-2862. ⟨10.1093/jxb/ery142⟩ Article dans une revue hal-02379644v1
Whole-genome landscape of Medicago truncatula symbiotic genes Yann Pecrix,S. Evan Staton,Erika Sallet,Christine Lelandais-Brière,Sandra Moreauet al. Nature Plants, 2018, 4 (12), pp.1017-1025. ⟨10.1038/s41477-018-0286-7⟩ Article dans une revue hal-04779324v1
GDP-L-fucose is required for boundary definition in plants Beatriz Goncalves,Aude Maugarny-Calès,Bernard B. Adroher,Millan Cortizo,Néro N. Borregaet al. Journal of Experimental Botany, 2017, 68 (21-22), pp.5801-5811. ⟨10.1093/jxb/erx402⟩ Article dans une revue hal-02379649v1
A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture Teddy Jegu,Séverine Domenichini,Thomas Blein,Federico Ariel,Aurélie Christet al. PLoS ONE, 2015, 10 (10), pp.e0138276. ⟨10.1371/journal.pone.0138276⟩ Article dans une revue hal-02379647v1
The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution Thorsten Schmidt,Taras Pasternak,Kun Liu,Thomas Blein,Dorothée Aubry-Hivetet al. The Plant Journal, 2014, 77 (5), pp.806-814. ⟨10.1111/tpj.12429⟩ Article dans une revue hal-02379660v1
A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis Céline Sorin,Marie Declerck,Aurélie Christ,Thomas Blein,Linnan Maet al. New Phytologist, 2014, 202 (4), pp.1197-1211. ⟨10.1111/nph.12735⟩ Article dans une revue hal-02379657v1
Variational attenuation correction in two-view confocal microscopy Torsten Schmidt,Jasmin Dürr,Margret Keuper,Thomas Blein,Klaus Palmeet al. BMC Bioinformatics, 2013, 14, pp.1-17. ⟨10.1186/1471-2105-14-366⟩ Article dans une revue hal-01204091v1
Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection Thomas Blein,Veronique Pautot,Patrick P. Laufs Plants, 2013, 2 (2), pp.230-247. ⟨10.3390/plants2020230⟩ Article dans une revue hal-02379666v1
Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgenes Manoj Kumar Singh,Fugang Ren,Torsten Giesemann,Cristina Dal Bosco,Taras Pasternaket al. The Plant Journal, 2012, 73 (2), pp.314-324. ⟨10.1111/tpj.12040⟩ Article dans une revue hal-02379668v1
Evolution and diverse roles of the cup-shaped cotyledon genes in [i]Arabidopsis[/i] leaf development Alice A. Hasson,Anne A. Plessis,Thomas T. Blein,Bernard B. Adroher,Stephen S. Grigget al. The Plant cell, 2011, 23 (1), pp.54-68. ⟨10.1105/tpc.110.081448⟩ Article dans une revue hal-01001165v1
Leaf development: what it needs to be complex Thomas Blein,Alice Hasson,Patrick Laufs Current Opinion in Plant Biology, 2010, 13 (1), pp.75-82. ⟨10.1016/j.pbi.2009.09.017⟩ Article dans une revue istex hal-01203937v1
Leaving the meristem behind: the genetic and molecular control of leaf patterning and morphogenesis Alice Hasson,Thomas Blein,Patrick Laufs Comptes Rendus. Biologies, 2010, 333 (4), pp.350-360. ⟨10.1016/j.crvi.2010.01.013⟩ Article dans une revue istex hal-01203897v1
A Conserved Molecular Framework for Compound Leaf Development Thomas T. Blein,Amada Pulido,Aurélie Vialette-Guiraud,Krisztina Nikovics,Halima H. Morinet al. Science, 2008, 322 (5909), pp.1835-1839. ⟨10.1126/science.1166168⟩ Article dans une revue hal-02263093v1
Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana Smita Raman,Thomas Greb,Alexis Peaucelle,Thomas Blein,Patrick Laufset al. The Plant Journal, 2008, 55 (1), pp.65-76. ⟨10.1111/j.1365-313X.2008.03483.x⟩ Article dans une revue hal-01604969v1
The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis Krisztina Nikovics,Thomas T. Blein,Alexis A. Peaucelle,Tetsuya Ishida,Halima H. Morinet al. The Plant cell, 2006, 18 (11), pp.2929-2945 Article dans une revue hal-02669130v1

Communication dans un congrès (7)

Statistical multi-scale atlasing of leaf morphogenesis Faïçal Selka,Jasmine Burguet,Eric Biot,Thomas T. Blein,Patrick Laufset al. 7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France Communication dans un congrès hal-02733992v1
Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis Faïçal Selka,Thomas T. Blein,Jasmine Burguet-de Curières,Eric Biot,Patrick Laufset al. Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-02786234v1
Surface parameterization and registration for statistical multiscale atlasing of organ development Faïçal Selka,Jasmine Burguet,Eric Biot,Thomas T. Blein,Patrick Laufset al. IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2019, Long Beach, Californie, United States. ⟨10.1109/CVPRW.2019.00022⟩ Communication dans un congrès hal-02733984v1
Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula. Yann Pecrix,S Evan Staton,Erika Sallet,Christine Lelandais Briere,Sandra Moreauet al. International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France Communication dans un congrès hal-03355269v1
Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis Faïçal Selka,Thomas T. Blein,Jasmine Burguet,Eric Biot,Patrick Laufset al. 16. IEEE International Conference on Computer Vision (ICCV 2017), Oct 2017, Venise, Italy. 3212 p., ⟨10.1109/ICCVW.2017.14⟩ Communication dans un congrès hal-02737139v1
A conserved role for CUP-SHAPED COTYLEDON transcription factors during ovule development Beatriz Goncalves,Katia Belcram,Millan Cortizo,Alice Hasson,Thomas Bleinet al. The 26th international conference on Arabidopsis research (ICAR2015), Jul 2015, PARIS, France Communication dans un congrès hal-03759028v1
Discriminative detection and alignment in volumetric data Dominic Mai,Philipp Fischer,Thomas T. Blein,Jasmin Duerr,Klaus Palmeet al. 35th German Conference on Pattern Recognition (GCPR), Sep 2013, Saarbrucken, Germany. pp.10 Communication dans un congrès hal-02747948v1

Chapitre d'ouvrage (1)

MicroRNAs (miRNAs) and plant development Thomas Blein,Patrick Laufs eLS, John Wiley and Sons Ltd, 2016, 9780470015902. ⟨10.1002/9780470015902.a0020106.pub2⟩ Chapitre d'ouvrage hal-01533904v1

Pré-publication, Document de travail (10)

ChronoRoot 2.0: An Open AI-Powered Platform for 2D Temporal Plant Phenotyping Nicolás Gaggion,Rodrigo Bonazzola,María Florencia Legascue,María Florencia Mammarella,Florencia Sol Rodriguezet al. 2025 Pré-publication, Document de travail hal-05409929v1
The Arabidopsis RNA-binding protein SGS3 is recruited to the chromatin remodeler CHR11 to promote siRNA production from protein-coding genes Taline Elmayan,Thomas Blein,Emilie Elvira-Matelot,Ivan Le Masson,Aurélie Christet al. 2024 Pré-publication, Document de travail hal-04729123v1
Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms Camille Fonouni-Farde,Aurélie Christ,Thomas Blein,Juan Sebastián Ramírez-Prado,María Florencia Legascueet al. 2021 Pré-publication, Document de travail hal-03432759v1
The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA Thomas Roulé,Federico Ariel,Caroline Hartmann,Jose Gutierrez-Marcos,Nosheen Hussainet al. 2020 Pré-publication, Document de travail hal-03016338v1
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture Nicolás Gaggion,Federico Ariel,Vladimir Daric,Eric Lambert,Simon Legendreet al. 2020 Pré-publication, Document de travail hal-03016324v1
Identification and functional prediction of anthocyanin biosynthesis regulatory long non-coding RNAs (lncRNAs) in carrot Constanza Chialva,Thomas Blein,Martin Crespi,Diego Lijavetzky 2020 Pré-publication, Document de travail hal-03016329v1
Genome sequence of the cluster root forming white lupin; Barbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02790529v1
Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis Jérémie Bazin,Kiruthiga Mariappan,Thomas Blein,Ronny Voelz,Martin Crespiet al. 2019 Pré-publication, Document de travail hal-02399302v1
Two ecotype-related long non-coding RNAs in the environmental control of root growth Thomas Blein,Coline Balzergue,Thomas Roulé,Marc Gabriel,Laetitia Scalisiet al. 2019 Pré-publication, Document de travail hal-02399291v1
Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem Thomas Blein,Jasmin Duerr,Taras Pasternak,Thomas Haser,Thorsten Falket al. 2018 Pré-publication, Document de travail hal-02399357v1

Thèse (1)

Le rôle des gènes &lt;em&gt;NAM/CUC&lt;/em&gt; dans le développement de la feuille Thomas Blein Sciences du Vivant [q-bio]. 2008. Français. ⟨NNT : ⟩ Thèse tel-02823456v1