Access content directly




Image document

Larval density in the invasive Drosophila suzukii : Immediate and delayed effects on life‐history traits

Alicia Reyes‐ramírez , Zaïnab Belgaidi , Patricia Gibert , Thomas Pommier , Aurélie Siberchicot
Ecology and Evolution, 2023, 13 (8), ⟨10.1002/ece3.10433⟩
Journal articles hal-04206242v1
Image document

Microbiome analysis in Lascaux Cave in relation to black stain alterations of rock surfaces and collembola

Lise Alonso , Thomas Pommier , Laurent Simon , Flavien Maucourt , Jeanne Doré
Environmental Microbiology Reports, 2023, 15 (2), pp.80-91. ⟨10.1111/1758-2229.13133⟩
Journal articles hal-04255508v1
Image document

Early spring snowmelt and summer droughts strongly impair the resilience of bacterial community and N cycling functions in a subalpine grassland ecosystem

Farhan Hafeez , Jean‐christophe Clément , Lionel Bernard , Franck Poly , Thomas Pommier
Oikos, 2023, 2023 (7), ⟨10.1111/oik.09836⟩
Journal articles hal-04152883v1

Diverse organic carbon activates soil microbiome functioning via niche modulation

Thomas Pommier
Soil Ecology Letters, 2023, 5 (4), pp.230180. ⟨10.1007/s42832-023-0180-8⟩
Journal articles hal-04205972v1
Image document

Microbial ecology of tourist Paleolithic caves

Zélia Bontemps , Lise Alonso , Thomas Pommier , Mylène Hugoni , Yvan Moënne-Loccoz
Science of the Total Environment, 2022, 816, pp.151492. ⟨10.1016/j.scitotenv.2021.151492⟩
Journal articles hal-03472792v1

Indirect reduction of Ralstonia solanacearum via pathogen helper inhibition

Mei Li , Thomas Pommier , Yue Yin , Jianing Wang , Shaohua Gu
ISME Journal, 2022, 16 (3), pp.868-875. ⟨10.1038/s41396-021-01126-2⟩
Journal articles hal-03629466v1
Image document

Escherichia coli concentration, multiscale monitoring over the decade 2011-2021 in the Mekong River basin, Lao PDR

Laurie Boithias , Olivier Ribolzi , Emma Rochelle-Newall , Chanthanousone Thammahacksa , Paty Nakhle
Earth System Science Data, 2022, 14, pp.2883-2894. ⟨10.5194/essd-14-2883-2022⟩
Journal articles insu-03721926v1
Image document

Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions

Mei Li , Thomas Pommier , Yue Yin , Wenhui Cao , Xiaohui Zhang
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16184⟩
Journal articles hal-03776248v1
Image document

Overland flow during a storm event strongly affects stream water chemistry and bacterial community structure

Huong T. Le , Thomas Pommier , Olivier Ribolzi , Bounsamay Soulileuth , Sylvain Huon
Aquatic Sciences - Research Across Boundaries, 2022, 84 (1), pp.7. ⟨10.1007/s00027-021-00839-y⟩
Journal articles hal-04205924v1
Image document

Microbiome Analysis of New, Insidious Cave Wall Alterations in the Apse of Lascaux Cave

Lise Alonso , Thomas Pommier , Danis Abrouk , Mylène Hugoni , Van Tran Van
Microorganisms, 2022, 10 (12), pp.2449. ⟨10.3390/microorganisms10122449⟩
Journal articles hal-04032220v1
Image document

Plant functional trait variability and trait syndromes among wheat varieties: the footprint of artificial selection

Amélie Cantarel , Vincent Allard , Bruno Andrieu , Sébastien Barot , Jérôme Enjalbert
Journal of Experimental Botany, 2021, 72 (4), pp.1166-1180. ⟨10.1093/jxb/eraa491⟩
Journal articles hal-03121526v1
Image document

Quantifying the effect of overland flow on Escherichia coli pulses during floods: use of a tracer-based approach in an erosion-prone tropical catchment

Laurie Boithias , Olivier Ribolzi , Guillaume Lacombe , Chanthamousone Thammahacksa , Norbert Silvera
Journal of Hydrology, 2021, 594, pp.125935. ⟨10.1016/j.jhydrol.2020.125935⟩
Journal articles hal-03093896v1
Image document

Siderophore-Mediated Interactions Determine the Disease Suppressiveness of Microbial Consortia

Shaohua Gu , Tianjie Yang , Zhengying Shao , Tao Wang , Kehao Cao
mSystems, 2020
Journal articles hal-02945889v1

Land use strongly influences soil organic carbon and bacterial community export in runoff in tropical uplands

Huong T. Le , Emma Rochelle Newall , Olivier Ribolzi , Jean Louis Janeau , Sylvain Huon
Land Degradation and Development, 2020, 31 (1), pp.118-132. ⟨10.1002/ldr.3433⟩
Journal articles hal-02624058v1
Image document

Rhizosphere immunity: targeting the underground for sustainable plant health management

Zhong Wei , Ville-Petri Friman , Thomas Pommier , Stefan Geisen , Alexandre Jousset
Frontiers of Agricultural Science and Engineering, 2020, 7 (3), pp.317-328. ⟨10.15302/J-FASE-2020346⟩
Journal articles hal-02945887v1

Facilitation promotes invasions in plant-associated microbial communities

Mei Li , Zhong Wei , Jianing Wang , Alexandre Jousset , Ville-Petri Friman
Ecology Letters, 2019, 22 (1), pp.149-158. ⟨10.1111/ele.13177⟩
Journal articles hal-02622620v1
Image document

Mangrove facies drives resistance and resilience of sediment microbes exposed to anthropic disturbance

Cecile Capdeville , Thomas Pommier , Jonathan Gervaix , Francois Fromard , Jean-Luc Rols
Frontiers in Microbiology, 2019, 9, ⟨10.3389/fmicb.2018.03337⟩
Journal articles hal-02268918v1

Different groups of nitrite-reducers and N2O-reducers have distinct ecological niches and functional roles in West African cultivated soils

Feline L. Assemien , Amélie Cantarel , Alessandro Florio , Catherine Lerondelle , Thomas Pommier
Soil Biology and Biochemistry, 2019, 129, pp.39-47. ⟨10.1016/j.soilbio.2018.11.003⟩
Journal articles hal-02269507v1

Anthropization level of Lascaux Cave microbiome shown by regional‐scale comparisons of pristine and anthropized caves

Lise Alonso , Thomas Pommier , Bernard Kaufmann , Audrey Dubost , David Chapulliot
Molecular Ecology, 2019, 28 (14), pp.3383-3394. ⟨10.1111/mec.15144⟩
Journal articles hal-02310389v1
Image document

Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave

Lise Alonso , Charline Creuzé-Des-Châtelliers , Théo Trabac , Audrey Dubost , Yvan Moenne-Loccoz
Microbiome, 2018, 6, pp.1-15. ⟨10.1186/s40168-018-0599-9⟩
Journal articles hal-02154637v1

The added value of including key microbial traits to determine nitrogen-related ecosystem services in managed grasslands

Thomas Pommier , Amélie A. M. Cantarel , Karl Grigulis , Sandra Lavorel , Nicolas Legay
Journal of Applied Ecology, 2018, 55 (1), pp.49 - 58. ⟨10.1111/1365-2664.13010⟩
Journal articles hal-01688474v1

Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment

Huong T Le , Emma Rochelle-Newall , Yves Auda , Olivier Ribolzi , Oloth Sengtaheuanghoung
FEMS Microbiology Ecology, 2018, 94 (11), ⟨10.1093/femsec/fiy155⟩
Journal articles hal-02479068v1

Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event

Nicolas Legay , Gabin Piton , Cindy Arnoldi , Lionel Bernard , Marie-Noelle Binet
Plant and Soil, 2018, 424 (1-2), pp.233-254. ⟨10.1007/s11104-017-3403-x⟩
Journal articles hal-01688479v1
Image document

Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas

Féline L. Assémien , Thomas Pommier , J. T. Gonnety , Jonathan Gervaix , Xavier Le Roux
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-10185-5⟩
Journal articles hal-02487206v1

Green alder (Alnus viridis) encroachment shapes microbial communities in subalpine soils and impacts its bacterial or fungal symbionts differently

Guillaume Schwob , M. Roy , S. Manzi , Thomas Pommier , M. P. Fernandez
Environmental Microbiology, 2017, 19 (8), pp.3235-3250. ⟨10.1111/1462-2920.13818⟩
Journal articles hal-02487211v1
Image document

Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities

Alessandro Florio , Thomas Pommier , Jonathan Gervaix , Annette Berard , Xavier Le Roux
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-08589-4⟩
Journal articles hal-01608082v1
Image document

Titanium dioxide nanoparticles strongly impact soil microbial function by affecting archaeal nitrifiers

Marie Simonin , Agnès Richaume-Jolion , Julien P. Guyonnet , Audrey Dubost , Jean M. F. Martins
Scientific Reports, 2016, 6, pp.1-10. ⟨10.1038/srep33643⟩
Journal articles hal-01602239v1

Management of Microbial Communities through Transient Disturbances Enhances the Functional Resilience of Nitrifying Gas-Biofilters to Future Disturbances

Léa Cabrol , Franck Poly , Luc Malhautier , Thomas Pommier , Catherine Lerondelle
Environmental Science and Technology, 2016, 50 (1), pp.338-48. ⟨10.1021/acs.est.5b02740⟩
Journal articles hal-01426896v1
Image document

Predicting the Responses of Soil Nitrite-Oxidizers to Multi-Factorial Global Change: A Trait-Based Approach

Xavier Le Roux , Nicholas J. Bouskill , Audrey Niboyet , Laure Barthes , Paul Dijkstra
Frontiers in Microbiology, 2016, 7, pp.628. ⟨10.3389/fmicb.2016.00628⟩
Journal articles hal-01331118v1
Image document

Influence of plant traits, soil microbial properties, and abiotic parameters on nitrogen turnover of grassland ecosystems

Nicolas Legay , Sandra Lavorel , Catherine Baxendale , Ute Krainer , Michael Bahn
Ecosphere, 2016, 7 (11), pp.e01448. ⟨10.1002/ecs2.1448⟩
Journal articles hal-01688415v1
Image document

Responses of Aquatic Bacteria to Terrestrial Runoff: Effects on Community Structure and Key Taxonomic Groups

Huong T. Le , Cuong T. Ho , Quan H. Trinh , Duc A. Trinh , Minh T.N. Luu
Frontiers in Microbiology, 2016, 7, pp.889. ⟨10.3389/fmicb.2016.00889⟩
Journal articles hal-01344127v1

Using plant traits to explain plant–microbe relationships involved in nitrogen acquisition

Amélie Cantarel , Thomas Pommier , Marie Desclos-Theveniau , Sylvain Diquelou , Maxime Dumont
Ecology, 2015, 96 (3), pp.788-799. ⟨10.1890/13-2107.1⟩
Journal articles hal-02183507v1

Impact of terrestrial runoff on organic matter, trophic state, and phytoplankton in a tropical, upland reservoir

Duc Anh Trinh , Thi Nguyet Minh Luu , Quan Hong Trinh , Hai Sy Tran , Tien Minh Tran
Aquatic Sciences - Research Across Boundaries, 2015, 78 (2), pp.1-13. ⟨10.1007/s00027-015-0439-y⟩
Journal articles hal-02487302v1

Evidence for biological denitrification inhibition (BDI) by plant secondary metabolites

Clément Bardon , Florence Piola , Floriant Bellvert , Feth El Zahar Haichar , Gilles Comte
New Phytologist, 2014, 204 (3), pp.620-630. ⟨10.1111/nph.12944⟩
Journal articles hal-01085302v1

Are plant-soil feedback responses explained by plant traits?

Catherine Baxendale , Kate H. Orwin , Franck Poly , Thomas Pommier , Richard D. Bardgett
New Phytologist, 2014, 204 (2), pp.408-423. ⟨10.1111/nph.12915⟩
Journal articles hal-02487469v1

Off-site impacts of agricultural composting: role of terrestrially derived organic matter in structuring aquatic microbial communities and their metabolic potential

Thomas Pommier , Asmaa Merroune , Yvan Bettarel , Patrice Got , Jean-Louis Janeau
FEMS Microbiology Ecology, 2014, 90 (3), pp.622-632. ⟨10.1111/1574-6941.12421⟩
Journal articles hal-02487470v1
Image document

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

B. G. Crespo , Thomas Pommier , B. Fernández-Gómez , C. Pedrós-Alió
MicrobiologyOpen, 2013, 2 (4), pp.541-552. ⟨10.1002/mbo3.92⟩
Journal articles hal-02522216v1

Relative contributions of plant traits and soil microbial properties to mountain grassland ecosystem services

Karl Grigulis , Sandra Lavorel , Ute Krainer , Nicolas Legay , Catherine Baxendale
Journal of Ecology, 2013, Plant Functional Effects On Ecosystem Services, 101 (1), pp.47-57. ⟨10.1111/1365-2745.12014⟩
Journal articles hal-01687645v1

Phytochemical analysis of mature tree root exudates in situ and their role in shaping soil microbial communities in relation to tree N-acquisition strategy

Serge Michalet , Julien Rohr , Denis Warshan , Clément Bardon , Jean-Christophe Rogy
Plant Physiology and Biochemistry, 2013, 72, pp.169-177. ⟨10.1016/j.plaphy.2013.05.003⟩
Journal articles hal-01032437v1
Image document

Four years of experimental climate change modifies the microbial drivers of N2O fluxes in an upland grassland ecosystem

Amélie A. M. Cantarel , Juliette Bloor , Thomas Pommier , Nadine Guillaumaud , Caroline Moirot
Global Change Biology, 2012, 18 (8), pp.2520-2531. ⟨10.1111/j.1365-2486.2012.02692.x⟩
Journal articles halsde-00722571v1

Two decades of describing the unseen majority of aquatic microbial diversity

Lucie Zinger , Angélique Gobet , Thomas Pommier
Molecular Ecology, 2012, 21 (8), pp.1878-1896. ⟨10.1111/j.1365-294X.2011.05362.x⟩
Journal articles halsde-00724641v1

Environment drives high phylogenetic turnover among oceanic bacterial communities

Thomas Pommier , Emmanuel J.P. Douzery , David Mouillot
Biology Letters, 2012, 8 (4), pp.562-566. ⟨10.1098/rsbl.2011.0990⟩
Journal articles halsde-00723071v1

Phylogenetic constraints on ecosystem functioning

Dominique Gravel , Thomas A. Bell , Claire Barbera , Marine Combe , Thomas Pommier
Nature Communications, 2012, 3 (1), ⟨10.1038/ncomms2123⟩
Journal articles hal-01892932v1

Pole-to-pole biogeography of surface and deep marine bacterial communities

J.-F. Ghiglione , P. E. Galand , Thomas Pommier , C. Pedrós-Alió , E. W. Maas
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17633-17638. ⟨10.1073/pnas.1208160109⟩
Journal articles hal-02531848v1
Image document

Contrasted Effects of Diversity and Immigration on Ecological Insurance in Marine Bacterioplankton Communities

T. Bouvier , P. Venail , Thomas Pommier , C. Bouvier , C. Barbera
PLoS ONE, 2012, 7 (6), pp.e37620. ⟨10.1371/journal.pone.0037620⟩
Journal articles hal-02531846v1

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

Thomas Pommier , Pr. Neal , J. Gasol , M. Coll , S. Acinas
Aquatic Microbial Ecology, 2010, 61 (3), pp.221-233. ⟨10.3354/ame01484⟩
Journal articles hal-02548057v1

Experimental niche evolution alters the strength of the diversity-productivity relationship

D. Gravel , T. Bell , C. Barbera , T. Bouvier , Thomas Pommier
Nature, 2010, 469 (7328), pp.89-92. ⟨10.1038/nature09592⟩
Journal articles hal-02548056v1

Improving fertile soil management in cities : a microbial perspective

Thomas Pommier
iEES Paris_ Seminar Series, iEES Paris, Sep 2023, Paris, France
Conference papers hal-04206264v1

Nature Based Solutions to manage N-related functional groups of urban soils

Thomas Pommier
International LorMe seminars for advanced great science, Huazhong Agricultural University, Mar 2023, Wuhan, China
Conference papers hal-04206274v1

N-related functional groups are key indicators of constructed technosols maturation and drought resistance improvement in urban ecosystems

Thomas Pommier
Nitrogen-induced Susceptibility Workshop, Nanjing Agricultural University, Apr 2023, Nanjing, China
Conference papers hal-04206291v1
Image document

Exposures of soil microbial communities to realistic antibiotics concentrations: key parameters for environmental risk assessment

Olivier Crouzet , Anais Goulas , Claire-Sophie Haudin , Pierre Benoit , Alain Hartmann
1ère conférence internationale d’Ecotoxicologie Microbienne, EcotoxicoMic, Nov 2017, Lyon, France
Conference papers hal-01604497v1

Microbial metacommunity: a METABAR coding approach

Marc Buée , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01607836v1

Réponses des fonctions microbiennes de dégradation des matières organiques des sols à un gradient d’anthropisation d’agrosystèmes

Gwenaëlle Lashermes , Gonzague Alavoine , Juliette Bloor , Pascal Carrère , Xavier Charrier
TEBIS (Traits Ecologiques et Biologiques des organIsmes des Sols) VI, Oct 2017, Metz, France
Conference papers hal-02785780v1

Ecotoxicological impact of sulfamethoxazole on nitrogen cycling microbial communities, in agricultural amended soil

Olivier Crouzet , Anais Goulas , Agnès Richaume-Jolion , Thomas Pommier , Christelle Marrauld
1st International Conference on the Risk Assessment of PHarmaceuticals in the Environment, Sep 2016, Paris, France
Conference papers hal-01595690v1

Can we manage plant-microbes interactions belowground to increase the sustainability of cropping systems ? The case of maize seed inoculation with the beneficial Azospirillum lipoferum CRT1 and its effects on the N-cycling rhizospheric microbial communities

Allessandro Florio , Thomas Pommier , Jonathan Gervaix , Xavier Le Roux
EcoSummit 2016 Ecological Sustainability, Aug 2016, Montpellier, France
Conference papers hal-02545157v1
Image document

Increasing species richness and genetic diversity in agriculture: results of the Wheatamix project

Jerome Enjalbert , Vincent Allard , Bruno Andrieu , Sébastien Barot , Julie Borg
5. International EcoSummit Congress - Ecological Sustainability: Engineering Change, Aug 2016, Montpellier, France. 40 p
Conference papers hal-01799552v1

Ecotoxicological impact of an antibiotic mixture on soil nitrogen cycling microbial guilds

Olivier Crouzet , Anais Goulas , Agnès Richaume-Jolion , Thomas Pommier , Christelle Marrauld
First International Conference on Risk Assessment of Pharmaceuticals in the Environment (ICRAPHE), Sep 2016, Paris, France
Conference papers hal-01605584v1

Can we manage plant-microbe interactions belowground to increase sustainable crop productions? The case of Maize seed inoculation with Azospirillum lipoferum CRT1 and its effects on N-cycling rhizospheric microbial communities

Alessandro Florio , Thomas Pommier , Jonathan Gervaix , Laurent Legendre , Xavier Le Roux
EcoSummit 2016. Ecological Sustainability: Engineering Change, Aug 2016, Marseille, France
Conference papers hal-01834756v1

WHEATAMIX Project : Increasing within-field wheat diversity to foster ecosystem services in the Parisian basin

Vincent Allard , Bruno Andrieu , Sébastien Barot , Julie Borg , Amélie Cantarel
3. International Conference on Biodiversity and the UN Millennium Development Goals,Biodiversity and Food Security – From Trade-offs to Synergies, Oct 2014, Aix en Provence, France
Conference papers hal-01620718v1

WHEATAMIX Project : Increasing within-field wheat diversity to foster ecosystem services in the Parisian basin

Vincent Allard , Bruno Andrieu , Sébastien Barot , Julie Borg , Amélie Cantarel
Solibam final congress - Diversity strategies for organic and low input agricultures and their food systems, Jul 2014, Nantes, France
Conference papers hal-01620719v1

Predicting soil bacterial responses to multi-factor global change with trait-based modelling

Xavier Le Roux , Nicholas Bouskill , Audrey Niboyet , Bruce A. Hungate , Thomas Pommier
First Global Soil Biodiversity Conference, Dec 2014, Dijon, France
Conference papers hal-01655401v1

How plant functional traits cascade to microbial function and ecosystem services in mountain grasslands

Sandra Lavorel , Karl Grigulis , Ute Krainer , Nicolas Legay , M. Dumont
EGU General Assembly 2012, Apr 2012, Vienne, Austria. pp.6359-1
Conference papers hal-02545086v1
Image document

Climate change drivers modify N2O fluxes via changes in microbial populations in a grassland experiment

Amélie Cantarel , Juliette Bloor , Thomas Pommier , Nadine Guillaumaud , Jean-François J.-F. Soussana
BES Annual Meeting, Sep 2011, Sheffield, United Kingdom
Conference papers hal-02804220v1
Image document

N-microbial properties are key indicators of fertility in maturating soils built for urban greening.

Marine Durand , Nicolas Legay , Nolwenn Le Guyader , Jonathan Gervaix , Sonia Czarnes
ESA - CSEE Annual meeting: A change is gonna come, Aug 2022, Montréal Québec, Canada
Conference poster hal-04206338v1
Image document

Responses of microbial degradation patterns of soil organic matter to a gradient of anthropogenic pressure on agrosystems

Gwenaëlle Lashermes , Gonzague Alavoine , Juliette Bloor , Pascal Carrère , Xavier Charrier
Ecology of Soil Microorganisms Conference, Jun 2018, Helsinki, Finland. 2018
Conference poster hal-02785794v1

Carbon and nitrogen limitation explains the contrasting responses of rhizospheric N-cycling microbial communities to maize inoculation by Azospirillum lipoferum CRT1

Alessandro Florio , Thomas Pommier , Jonathan Gervaix , Caroline Bréfort , Annette Berard
EGU 2017, European Geophysical Union General Assembly 2017, Apr 2017, Vienne, Austria. 19, 2017, 19th EGU General Assembly, EGU2017 : proceedings from the conference held 23-28 April, 2017 in Vienna, Austria
Conference poster hal-01834755v1

Plant-microbes interactions in the rhizosphere of maize inoculated with Azospirillum lipoferum CRT1: implications for soil N-cycling microorganisms

Alessandro Florio , Thomas Pommier , Jonathan Gervaix , Laurent Legendre , Xavier Le Roux
Sfécologie-2016, International Conference of Ecological Sciences, Oct 2016, Marseille, France. 2016
Conference poster hal-01834753v1
Image document

Four years of experimental climate change modifies the community structure of denitrifiers and the related microbial drivers of N2O fluxes in an upland grassland ecosystem.

Thomas Pommier , Amélie Cantarel , Juliette Bloor , Franck Poly
2. Thünen Symposium on Soil Metagenomics, Dec 2013, Braunschweig, Germany. 2013
Conference poster hal-02802239v1

Multiplicité des symbioses : du parasitisme au mutualisme

Wafa Achouak , Philippe Bertin , Pierre Capy , Didier Debroas , Franck Dedeine
L’empreinte du Vivant, Le Cherche Midi, pp.191, 2015, 978-2-7491-4383-5
Book sections hal-02389481v1