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HT-smFISH: a cost effective and flexible workflow for high-throughput single molecule RNA imaging
Adham Safieddine
,
Emeline Coleno
,
Frederic Lionneton
,
Abdel-Meneem Traboulsi
,
Soha Salloum
Journal articles
hal-03834928v1
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FISH-quant v2: a scalable and modular tool for smFISH image analysis
Arthur Imbert
,
Wei Ouyang
,
Adham Safieddine
,
Emeline Coleno
,
Christophe Zimmer
Journal articles
hal-03942851v2
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Deep learning identifies morphological patterns of homologous recombination deficiency in luminal breast cancers from whole slide images
Tristan Lazard
,
Guillaume Bataillon
,
Peter Naylor
,
Tatiana Popova
,
François-Clément Bidard
Journal articles
hal-03936608v1
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Prediction of Treatment Response in Triple Negative Breast Cancer From Whole Slide Images
Peter Naylor
,
Tristan Lazard
,
Guillaume Bataillon
,
Marick Laé
,
Anne Vincent-Salomon
Journal articles
hal-03942865v1
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Second-Line Treatment and Prognostic Factors in Neuroendocrine Carcinoma.
Julien Hadoux
,
Thomas Walter
,
Christina Kanaan
,
Segolene Hescot
,
Vincent Hautefeuille
Journal articles
hal-03746086v1
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Neural network fast‐classifies biological images through features selecting to power automated microscopy
Maël Balluet
,
Florian Sizaire
,
Youssef El Habouz
,
Thomas Walter
,
Jérémy Pont
Journal articles
hal-03408803v1
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A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport
Adham Safieddine
,
Emeline Coleno
,
Soha Salloum
,
Arthur Imbert
,
Abdel-Meneem Traboulsi
Journal articles
hal-03014936v2
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Spatial transcriptomics for respiratory research and medicine
Sandra Curras-Alonso
,
Juliette Soulier
,
Thomas Walter
,
Florian Mueller
,
Arturo Londoño-Vallejo
Journal articles
hal-03633353v1
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A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting
Racha Chouaib
,
Adham Safieddine
,
Xavier Pichon
,
Arthur Imbert
,
Oh Sung Kwon
Journal articles
pasteur-02925687v1
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Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses
Mélanie Durand
,
Thomas Walter
,
Tiphène Pirnay
,
Thomas Naessens
,
Paul Guéguen
Journal articles
hal-02440608v1
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Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen
Joseph Boyd
,
Alice Pinheiro
,
Elaine Del Nery
,
Fabien Reyal
,
Thomas Walter
Journal articles
hal-02440603v1
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Prognosis and chemosensitivity of non-V600E BRAF mutations in metastatic colorectal carcinoma (mCRC): An AGEO French multicenter retrospective cohort.
Aline Derosiere
,
Vincent Nicolai
,
David Malka
,
Astrid Pozet
,
Julien Lazartigues
Journal articles
hal-03606012v1
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A computational framework to study sub-cellular RNA localization
Aubin Samacoits
,
Racha Chouaib
,
Adham Safieddine
,
Abdel-Meneem Traboulsi
,
Christophe Zimmer
Journal articles
hal-01984014v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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Kernel Multitask Regression for Toxicogenetics
Elsa Bernard
,
Yunlong Jiao
,
Erwan Scornet
,
Véronique Stoven
,
Thomas Walter
Journal articles
hal-01679030v1
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ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.
Mayumi Isokane
,
Thomas Walter
,
Robert Mahen
,
Bianca Nijmeijer
,
Jean-Karim Hériché
Journal articles
hal-01427937v1
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smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.
Nikolay Tsanov
,
Aubin Samacoits
,
Racha Chouaib
,
Abdel-Meneem Traboulsi
,
Thierry Gostan
Journal articles
pasteur-01375913v1
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Waterpixels
Vaïa Machairas
,
Matthieu Faessel
,
David Cárdenas-Peña
,
Théodore Chabardes
,
Thomas Walter
Journal articles
hal-01212760v1
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Assessment of algorithms for mitosis detection in breast cancer histopathology images
Mitko Veta
,
Paul J. Van Diest
,
Stefan M. Willems
,
Haibo Wang
,
Anant Madabhushi
Journal articles
hal-01246695v1
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Prediction of human population responses to toxic compounds by a collaborative competition.
Federica Eduati
,
Lara M Mangravite
,
Tao Wang
,
Hao Tang
,
J Christopher Bare
Journal articles
hal-01428019v1
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A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
Journal articles
hal-01246689v1
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MAP1S controls microtubule stability throughout the cell cycle in human cells
Justus Tegha-Dunghu
,
Elena Bausch
,
Beate Neumann
,
Annelie Wuensche
,
Thomas Walter
Journal articles
hal-01101879v1
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A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression
Veronika Graml
,
Xenia Studera
,
Jonathan L.D. Lawson
,
Anatole Chessel
,
Marco Geymonat
Journal articles
hal-01101880v1
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Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation
Jean-Karim Hériché
,
Jon G. Lees
,
Ian Morilla
,
Thomas Walter
,
Boryana Petrova
Journal articles
hal-01101877v1
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A community effort to assess and improve drug sensitivity prediction algorithms
James C Costello
,
Laura M Heiser
,
Elisabeth Georgii
,
Mehmet Gönen
,
Michael P Menden
Journal articles
hal-01101874v1
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Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.
Gregoire Pau
,
Thomas Walter
,
Beate Neumann
,
Jean-Karim Hériché
,
Jan Ellenberg
Journal articles
inserm-00880889v1
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Mitotic lamin disassembly is triggered by lipid-mediated signaling.
Moritz Mall
,
Thomas Walter
,
Mátyás Gorjánácz
,
Iain F Davidson
,
Thi Bach Nga Ly-Hartig
Journal of Cell Biology, 2012, 198 (6), pp.981-90
Journal articles
hal-01428007v1
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Micropilot: automation of fluorescence microscopy-based imaging for systems biology.
Christian Conrad
,
Annelie Wünsche
,
Tze Heng Tan
,
Jutta Bulkescher
,
Frank Sieckmann
Nature Methods, 2011, 8 (3), pp.246-9
Journal articles
hal-01430280v1
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CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging
Michael W Held
,
Michael W Schmitz
,
Bernd H Fischer
,
Thomas Walter
,
Beate H Neumann
Journal articles
hal-01431427v1
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Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
Beate Neumann
,
Thomas Walter
,
Jean-Karim Hériché
,
Jutta Bulkescher
,
Holger Erfle
Journal articles
hal-01144034v1
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Evaluation of automated fundus photograph analysis algorithms for detecting microaneurysms, haemorrhages and exudates, and of a computer-assisted diagnostic system for grading diabetic retinopathy
Bénédicte Dupas
,
Thomas R. Walter
,
Ali Erginay
,
Richard Ordonez
,
Nilanjana Deb-Joardar
Journal articles
hal-00836043v1
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Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging.
Thomas Walter
,
Michael Held
,
Beate Neumann
,
Jean-Karim Hériché
,
Christian Conrad
Journal of Structural Biology, 2010, 170 (1), pp.1-9
Journal articles
hal-01427996v1
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Anti-angiogenic properties of myo-inositol trispyrophosphate in ovo and growth reduction of implanted glioma
J.-M. Lehn
,
G. Sihn
,
T. Walter
,
J.-C. Klein
,
I. Queguiner
Journal articles
hal-00166409v1
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