|
|
Identifying Patients With Low Relapse Rate Despite High-Risk Estrogen Receptor–Positive/Human Epidermal Growth Factor Receptor 2–Negative Early Breast Cancer: Development and Validation of a Clinicopathologic Assay
François-Clément Bidard
,
Grégoire Gessain
,
Thomas Bachelot
,
Lucie Frechin
,
Anne Vincent-Salomon
et al.
Article dans une revue
hal-05230907v1
|
|
|
Exploring the risks of over-reliance on AI in diagnostic pathology. What lessons can be learned to support the training of young pathologists?
Yaëlle Bellahsen-Harrar
,
Mélanie Lubrano
,
Charles Lépine
,
Aurélie Beaufrère
,
Claire Bocciarelli
et al.
Article dans une revue
inserm-05230192v1
|
|
|
Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome in metastatic non-small cell lung cancer
Nicolas Captier
,
Marvin Lerousseau
,
Fanny Orlhac
,
Narinée Hovhannisyan-Baghdasarian
,
Marie Luporsi
et al.
Article dans une revue
hal-04950400v2
|
|
|
Cell-type deconvolution methods for spatial transcriptomics
Lucie Gaspard-Boulinc
,
Luca Gortana
,
Thomas Walter
,
Emmanuel Barillot
,
Florence Cavalli
Article dans une revue
hal-05230821v1
|
|
|
A deep learning approach for time-consistent cell cycle phase prediction from microscopy data
Thomas Bonte
,
Oriane Pourcelot
,
Adham Safieddine
,
Floric Slimani
,
Florian Mueller
et al.
Article dans une revue
hal-05458920v2
|
|
|
Erratum: Identifying Patients With Low Relapse Rate Despite High-Risk Estrogen Receptor–Positive/Human Epidermal Growth Factor Receptor 2–Negative Early Breast Cancer: Development and Validation of a Clinicopathologic Assay
François-Clément Bidard
,
Grégoire Gessain
,
Thomas Bachelot
,
Lucie Frechin
,
Anne Vincent-Salomon
et al.
Article dans une revue
hal-05423679v1
|
|
|
Trem2-expressing multinucleated giant macrophages are a biomarker of good prognosis in head and neck squamous cell carcinoma
Grégoire Gessain
,
Ahmed-Amine Anzali
,
Marvin Lerousseau
,
Kevin Mulder
,
Mathilde Bied
et al.
Article dans une revue
inserm-04729854v1
|
|
|
Cell-cycle-dependent mRNA localization in P-bodies
Adham Safieddine
,
Marie-Noëlle Benassy
,
Thomas Bonte
,
Floric Slimani
,
Oriane Pourcelot
et al.
Article dans une revue
hal-04787269v3
|
|
|
pyHiM: a new open-source, multi-platform software package for spatial genomics based on multiplexed DNA-FISH imaging
Xavier Devos
,
Jean-Bernard Fiche
,
Marion Bardou
,
Olivier Messina
,
Christophe Houbron
et al.
Article dans une revue
hal-04762623v1
|
|
|
A point cloud segmentation framework for image-based spatial transcriptomics
Thomas Defard
,
Hugo Laporte
,
Mallick Ayan
,
Juliette Soulier
,
Sandra Curras-Alonso
et al.
Article dans une revue
hal-04874000v1
|
|
|
Pitfalls in machine learning‐based assessment of tumor‐infiltrating lymphocytes in breast cancer: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer
Jeppe Thagaard
,
Glenn Broeckx
,
David Page
,
Chowdhury Arif Jahangir
,
Sara Verbandt
et al.
Article dans une revue
hal-04209913v1
|
|
|
An interactive murine single-cell atlas of the lung responses to radiation injury
Sandra Curras-Alonso
,
Juliette Soulier
,
Thomas Defard
,
Christian Weber
,
Sophie Heinrich
et al.
Article dans une revue
hal-04092147v1
|
|
|
Utilisation de l’intelligence artificielle pour prédire le statut tumoral relatif à la recombinaison homologue
Tristan Lazard
,
Guillaume Bataillon
,
Thomas Walter
,
Anne Vincent Salomon
Article dans une revue
istex
hal-04396381v1
|
|
|
Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer
David Page
,
Glenn Broeckx
,
Chowdhury Arif Jahangir
,
Sara Verbandt
,
Rajarsi Gupta
et al.
Article dans une revue
hal-04209907v1
|
|
|
Cell segmentation in images without structural fluorescent labels
Daniel Zyss
,
Susana A Ribeiro
,
Mary J C Ludlam
,
Thomas Walter
,
Amin Fehri
Article dans une revue
hal-04396484v1
|
|
|
HT-smFISH: a cost effective and flexible workflow for high-throughput single molecule RNA imaging
Adham Safieddine
,
Emeline Coleno
,
Frederic Lionneton
,
Abdel-Meneem Traboulsi
,
Soha Salloum
et al.
Article dans une revue
hal-03834928v1
|
|
|
Diagnosis with confidence: deep learning for reliable classification of laryngeal dysplasia
Mélanie Lubrano
,
Yaëlle Bellahsen-Harrar
,
Sylvain Berlemont
,
Sarah Atallah
,
Emmanuelle Vaz
et al.
Article dans une revue
hal-04396387v1
|
|
|
Prediction of Treatment Response in Triple Negative Breast Cancer From Whole Slide Images
Peter Naylor
,
Tristan Lazard
,
Guillaume Bataillon
,
Marick Laé
,
Anne Vincent-Salomon
et al.
Article dans une revue
hal-03942865v1
|
|
|
Neural network fast‐classifies biological images through features selecting to power automated microscopy
Maël Balluet
,
Florian Sizaire
,
Youssef El Habouz
,
Thomas Walter
,
Jérémy Pont
et al.
Article dans une revue
hal-03408803v1
|
|
|
FISH-quant v2: a scalable and modular tool for smFISH image analysis
Arthur Imbert
,
Wei Ouyang
,
Adham Safieddine
,
Emeline Coleno
,
Christophe Zimmer
et al.
Article dans une revue
hal-03942851v2
|
|
|
Deep learning identifies morphological patterns of homologous recombination deficiency in luminal breast cancers from whole slide images
Tristan Lazard
,
Guillaume Bataillon
,
Peter Naylor
,
Tatiana Popova
,
François-Clément Bidard
et al.
Article dans une revue
hal-03936608v1
|
|
|
The kinesin KIF1C transports APC-dependent mRNAs to cell protrusions
Xavier Pichon
,
Konstadinos Moissoglu
,
Emeline Coleno
,
Tianhong Wang
,
Arthur Imbert
et al.
Article dans une revue
hal-03371977v1
|
|
|
Spatial transcriptomics for respiratory research and medicine
Sandra Curras-Alonso
,
Juliette Soulier
,
Thomas Walter
,
Florian Mueller
,
Arturo Londoño-Vallejo
et al.
Article dans une revue
hal-03376218v1
|
|
|
A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport
Adham Safieddine
,
Emeline Coleno
,
Soha Salloum
,
Arthur Imbert
,
Abdel-Meneem Traboulsi
et al.
Article dans une revue
hal-03014936v2
|
|
|
A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting
Racha Chouaib
,
Adham Safieddine
,
Xavier Pichon
,
Arthur Imbert
,
Oh Sung Kwon
et al.
Article dans une revue
pasteur-02925687v1
|
|
|
Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses
Mélanie Durand
,
Thomas Walter
,
Tiphène Pirnay
,
Thomas Naessens
,
Paul Guéguen
et al.
Article dans une revue
hal-02440608v1
|
|
|
Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen
Joseph Boyd
,
Alice Pinheiro
,
Elaine Del Nery
,
Fabien Reyal
,
Thomas Walter
Article dans une revue
hal-02440603v1
|
|
|
Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Article dans une revue
hal-01984033v1
|
|
|
A computational framework to study sub-cellular RNA localization
Aubin Samacoits
,
Racha Chouaib
,
Adham Safieddine
,
Abdel-Meneem Traboulsi
,
Christophe Zimmer
et al.
Article dans une revue
hal-01984014v1
|
|
|
Kernel Multitask Regression for Toxicogenetics
Elsa Bernard
,
Yunlong Jiao
,
Erwan Scornet
,
Véronique Stoven
,
Thomas Walter
et al.
Article dans une revue
hal-01679030v1
|
|
|
ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.
Mayumi Isokane
,
Thomas Walter
,
Robert Mahen
,
Bianca Nijmeijer
,
Jean-Karim Hériché
et al.
Article dans une revue
hal-01427937v1
|
|
|
smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.
Nikolay Tsanov
,
Aubin Samacoits
,
Racha Chouaib
,
Abdel-Meneem Traboulsi
,
Thierry Gostan
et al.
Article dans une revue
pasteur-01375913v1
|
|
|
Assessment of algorithms for mitosis detection in breast cancer histopathology images
Mitko Veta
,
Paul J. Van Diest
,
Stefan M. Willems
,
Haibo Wang
,
Anant Madabhushi
et al.
Article dans une revue
hal-01246695v1
|
|
|
A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
et al.
Article dans une revue
hal-01246689v1
|
|
|
Waterpixels
Vaïa Machairas
,
Matthieu Faessel
,
David Cárdenas-Peña
,
Théodore Chabardes
,
Thomas Walter
et al.
Article dans une revue
hal-01212760v1
|
|
|
Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation
Jean-Karim Hériché
,
Jon G. Lees
,
Ian Morilla
,
Thomas Walter
,
Boryana Petrova
et al.
Article dans une revue
hal-01101877v1
|
|
|
A community effort to assess and improve drug sensitivity prediction algorithms
James C Costello
,
Laura M Heiser
,
Elisabeth Georgii
,
Mehmet Gönen
,
Michael P Menden
et al.
Article dans une revue
hal-01101874v1
|
|
|
A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression
Veronika Graml
,
Xenia Studera
,
Jonathan L.D. Lawson
,
Anatole Chessel
,
Marco Geymonat
et al.
Article dans une revue
hal-01101880v1
|
|
|
MAP1S controls microtubule stability throughout the cell cycle in human cells
Justus Tegha-Dunghu
,
Elena Bausch
,
Beate Neumann
,
Annelie Wuensche
,
Thomas Walter
et al.
Article dans une revue
hal-01101879v1
|
|
|
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.
Gregoire Pau
,
Thomas Walter
,
Beate Neumann
,
Jean-Karim Hériché
,
Jan Ellenberg
et al.
Article dans une revue
inserm-00880889v1
|
|
|
Mitotic lamin disassembly is triggered by lipid-mediated signaling.
Moritz Mall
,
Thomas Walter
,
Mátyás Gorjánácz
,
Iain F Davidson
,
Thi Bach Nga Ly-Hartig
et al.
Journal of Cell Biology, 2012, 198 (6), pp.981-90
Article dans une revue
hal-01428007v1
|
|
|
Micropilot: automation of fluorescence microscopy-based imaging for systems biology.
Christian Conrad
,
Annelie Wünsche
,
Tze Heng Tan
,
Jutta Bulkescher
,
Frank Sieckmann
et al.
Nature Methods, 2011, 8 (3), pp.246-9
Article dans une revue
hal-01430280v1
|
|
|
Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging.
Thomas Walter
,
Michael Held
,
Beate Neumann
,
Jean-Karim Hériché
,
Christian Conrad
et al.
Journal of Structural Biology, 2010, 170 (1), pp.1-9
Article dans une revue
hal-01427996v1
|
|
|
Evaluation of automated fundus photograph analysis algorithms for detecting microaneurysms, haemorrhages and exudates, and of a computer-assisted diagnostic system for grading diabetic retinopathy
Bénédicte Dupas
,
Thomas R. Walter
,
Ali Erginay
,
Richard Ordonez
,
Nilanjana Deb-Joardar
et al.
Article dans une revue
istex
hal-00836043v1
|
|
|
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
Beate Neumann
,
Thomas Walter
,
Jean-Karim Hériché
,
Jutta Bulkescher
,
Holger Erfle
et al.
Article dans une revue
hal-01144034v1
|
|
|
CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging
Michael W Held
,
Michael W Schmitz
,
Bernd H Fischer
,
Thomas Walter
,
Beate H Neumann
et al.
Article dans une revue
hal-01431427v1
|
|
|
Anti-angiogenic properties of myo-inositol trispyrophosphate in ovo and growth reduction of implanted glioma
J.-M. Lehn
,
G. Sihn
,
T. Walter
,
J.-C. Klein
,
I. Queguiner
et al.
Article dans une revue
hal-00166409v1
|