Thomas Boudier

Publications

Article dans une revue (34)

Modulation of SARS-CoV-2 spike binding to ACE2 through conformational selection Prithwidip Saha,Ignacio Fernandez,Fidan Sumbul,Claire Valotteau,Dorota Kostrzet al. Nature Nanotechnology, 2025, 20 (07), pp.926-934. ⟨10.1038/s41565-025-01908-1⟩ Article dans une revue hal-05109584v1
Spot Spine, a freely available ImageJ plugin for 3D detection and morphological analysis of dendritic spines Jean-Francois Gilles,Philippe Mailly,Tiago Ferreira,Thomas Boudier,Nicolas Heck F1000Research, 2024, 13, pp.176. ⟨10.12688/f1000research.146327.2⟩ Article dans une revue hal-04876006v1
Coupled mechanical mapping and interference contrast microscopy reveal viscoelastic and adhesion hallmarks of monocyte differentiation into macrophages Mar Eroles,Javier Lopez-Alonso,Alexandre Ortega,Thomas Boudier,Khaldoun Gharzeddineet al. Nanoscale, 2023, 15 (29), pp.12255-12269. ⟨10.1039/D3NR00757J⟩ Article dans une revue hal-04237254v1
Chromosomes distribute randomly to, but not within, human neutrophil nuclear lobes Christine R Keenan,Michael J Mlodzianoski,Hannah D Coughlan,Naiara G Bediaga,Gaetano Naselliet al. iScience, 2021, 24 (3), pp.102161. ⟨10.1016/j.isci.2021.102161⟩ Article dans une revue hal-03163183v1
TAPAS: Towards Automated Processing and Analysis of multi-dimensional bioimage data Jean-François Gilles,Thomas Boudier F1000Research, 2020, 9, pp.1278. ⟨10.12688/f1000research.26977.1⟩ Article dans une revue hal-03369334v1
A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images Lamees Nasser,Thomas Boudier Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-41683-3⟩ Article dans une revue hal-02090769v1
Structural basis for delta cell paracrine regulation in pancreatic islets Rafael Arrojo E Drigo,Stefan Jacob,Concha F. García-Prieto,Xiaofeng Zheng,Masahiro Fukudaet al. Nature Communications, 2019, 10, pp.3700. ⟨10.1038/s41467-019-11517-x⟩ Article dans une revue hal-02279607v1
Shifting meiotic to mitotic spindle assembly in oocytes disrupts chromosome alignment Isma Bennabi,Isabelle Quéguiner,Agnieszka Kolano,Thomas Boudier,Philippe Maillyet al. EMBO Reports, 2018, 19, pp.368 - 381. ⟨10.15252/embr.201745225⟩ Article dans une revue hal-03003475v1
Rapid synaptogenesis in the Nucleus Accumbens is induced by a single cocaine administration and stabilized by MAP Kinase interacting kinase 1 activity Marc dos Santos,Marine Salery,Benoit Forget,Maria Alexandra Garcia Perez,Sandrine Betuinget al. Biological Psychiatry, 2017, 82 (11), pp.806-818. ⟨10.1016/j.biopsych.2017.03.014⟩ Article dans une revue hal-01500913v1
A novel toolbox to investigate tissue spatial organization applied to the study of the islets of Langerhans Hoa Tran Thi Nhu,Per-Olof Berggren,Thomas Boudier,Rafael Arrojo E. Drigo Scientific Reports, 2017, 7, pp.44261. ⟨10.1038/srep44261⟩ Article dans une revue hal-01492461v1
Rapid Synaptogenesis in the Nucleus Accumbens Is Induced by a Single Cocaine Administration and Stabilized by Mitogen-Activated Protein Kinase Interacting Kinase-1 Activity Jocelyne Caboche,Marc Dos Santos,Marine Salery,Benoit Forget,Maria Alexandraet al. Biological Psychiatry, 2017, 82 (11), pp.806-818. ⟨10.1016/j.biopsych.2017.03.014⟩ Article dans une revue hal-03365856v1
Rapid Synaptogenesis in the Nucleus Accumbens Is Induced by a Single Cocaine Administration and Stabilized by Mitogen-Activated Protein Kinase Interacting Kinase-1 Activity Marc dos Santos,Marine Salery,Benoit Forget,Maria Alexandra Garcia Perez,Sandrine Betuinget al. Biological Psychiatry, 2017, 82 (11), pp.806-818. ⟨10.1016/j.biopsych.2017.03.014⟩ Article dans une revue hal-03429384v1
DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis Jean-François Gilles,Marc dos Santos,Thomas Boudier,Susanne Bolte,Nicolas Heck Methods, 2017, 115, pp.55-64. ⟨10.1016/j.ymeth.2016.11.016⟩ Article dans une revue hal-02960218v1
Biomineralization Patterns of Intracellular Carbonatogenesis in Cyanobacteria: Molecular Hypotheses Jinhua Li,Isabel Margaret-Oliver,Nithavong Cam,Thomas Boudier,Marine Blondeauet al. Minerals, 2016, 6 (1), pp.10. ⟨10.3390/min6010010⟩ Article dans une revue hal-01310553v1
DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis Jean-François Gilles,Marc dos Santos,Thomas Boudier,Susanne Bolte,Nicolas Heck Methods, 2016, 115, pp.55-64. ⟨10.1016/j.ymeth.2016.11.016⟩ Article dans une revue hal-01408946v1
Functional Assessment of Genetic Variants with Outcomes Adapted to Clinical Decision-Making Pierre Thouvenot,Barbara Ben Yamin,Lou Fourrière,Aurianne Lescure,Thomas Boudieret al. PLoS Genetics, 2016, 12 (6), pp.e1006096. ⟨10.1371/journal.pgen.1006096⟩ Article dans une revue hal-01360165v1
A new automated 3D detection of synaptic contacts reveals the formation of cortico-striatal synapses upon cocaine treatment in vivo Nicolas Heck,Marc dos Santos,Brahim Amairi,Marine Salery,Antoine Besnardet al. Brain Structure and Function, 2015, 220 (5), pp.2953-2966. ⟨10.1007/s00429-014-0837-2⟩ Article dans une revue hal-02372576v1
A generic classification-based method for segmentation of nuclei in 3D images of early embryos Jaza Gul-Mohammed,Ignacio Arganda-Carreras,Philippe Andrey,Vincent Galy,Thomas Boudier BMC Bioinformatics, 2014, 15 (1), pp.9. ⟨10.1186/1471-2105-15-9⟩ Article dans une revue hal-03953904v1
A generic classification-based method for segmentation of nuclei in 3D images of early embryos Jaza Gul-Mohammed,Ignacio Arganda Carreras,Philippe Andrey,Vincent Galy,Thomas Boudier BMC Bioinformatics, 2014, 15, pp.9. ⟨10.1186/1471-2105-15-9⟩ Article dans une revue hal-01204103v1
The architecture of Rhodobacter sphaeroides chromatophores Simon Scheuring,Reinat Nevo,Lu-Ning Liu,Stéphanie Mangenot,Dana Charuviet al. Biochimica biophysica acta (BBA) - Bioenergetics, 2014, 1837, pp.1263-1270. ⟨10.1016/j.bbabio.2014.03.011⟩ Article dans une revue inserm-01356860v1
Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange,Sonia Baconnais,Maryannick Harper,Nicola Minshall,Sylvie Souquereet al. RNA, 2012, 18 (9), pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-03065208v1
Software for drift compensation, particle tracking and particle analysis of high-speed atomic force microscopy image series † Mohamed Husain,Thomas Boudier,Perrine Paul-Gilloteaux,Ignacio Casuso,Simon Scheuring Journal of Molecular Recognition, 2012, 25 ((5)), pp.292-8. ⟨10.1002/jmr.2187⟩ Article dans une revue istex inserm-01363229v1
Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange,Sonia Baconnais,Maryannick Harper,Nicola Minshall,Sylvie Souquereet al. RNA, 2012, 18 (9), pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-02994882v1
Tangentially Migrating Neurons Assemble a Primary Cilium that Promotes Their Reorientation to the Cortical Plate Jean-Pierre Baudoin,Lucie Viou,Pierre-Serge Launay,Camilla Luccardini,Sergio Espeso Gilet al. Neuron, 2012, 76 (6), pp.1108 - 1122. ⟨10.1016/j.neuron.2012.10.027⟩ Article dans une revue hal-01541253v1
High-speed atomic force microscopy: cooperative adhesion and dynamic equilibrium of junctional microdomain membrane proteins. Adai Colom,Ignacio Casuso,Thomas Boudier,Simon Scheuring Journal of Molecular Biology, 2012, 423 (2), pp.249-56. ⟨10.1016/j.jmb.2012.07.004⟩ Article dans une revue inserm-01363148v1
Multiple binding of repressed mRNAs by the P-body protein Rck/p54 Michèle Ernoult-Lange,Sonia Baconnais,Maryannick Harper,Nicola Minshall,Sylvie Souquereet al. RNA, 2012, pp.1702-1715. ⟨10.1261/rna.034314.112⟩ Article dans une revue hal-01540245v1
NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments Eddie Iannuccelli,Florence Mompart,Joël Gellin,Yvette Lahbib Mansais,Martine M. Yerleet al. Bioinformatics, 2010, 26 (5), pp.696-697. ⟨10.1093/bioinformatics/btq013⟩ Article dans une revue hal-02662443v1
3D FISH for the quantification of methane- and sulphur-oxidizing endosymbionts in bacteriocytes of the hydrothermal vent mussel Bathymodiolus azoricus. Sébastien Halary,Virginie Riou,Françoise Gaill,Thomas Boudier,Sébastien Duperron international society for microbiological ecology, 2008, 2 (3), pp.284-92. ⟨10.1038/ismej.2008.3⟩ Article dans une revue hal-00325687v1
Rapport préliminaire sur les activités de la mission archéologique franco-syrienne dans la micro-région d'Al-Rawda (Shamiyeh) : quatrième et cinquième campagnes (2005 et 2006) Corinne Castel,Dorothée Archambault,Nazir Awad,Olivier Barge,Thomas Boudieret al. Akkadica, 2008, 129 (1), pp.5-54 Article dans une revue halshs-00578096v1
3D FISH for the quantification of methane- and sulphur-oxidising endosymbionts in bacteriocytes of the hydrothermal vent mussel Bathymodiolus azoricus. Sébastien Halary,Virginie Riou,Françoise Gaill,Thomas Boudier,Sébastien Duperron The International Society of Microbiologial Ecology Journal, 2008, 2(3), pp.284-292 Article dans une revue hal-00420166v1
Tomography of bacteria-mineral associations within the deep sea hydrothermal vent shrimp Rimicaris exoculata. Louise Anderson,Jean-Pierre Lechaire,Thomas Boudier,Sébastien Halary,Ghislaine Frebourget al. Comptes Rendus. Chimie, 2008, pp.268-280 Article dans une revue hal-00417268v1
Multiple-axis tomography: applications to basal bodies from Paramecium tetraurelia. Cédric Messaoudi,Nicole Garreau de Loubresse,Thomas Boudier,Pascale Dupuis-Williams,Sergio Marco Biology of the Cell, 2006, 98 (7), pp.415-25. ⟨10.1042/BC20050097⟩ Article dans une revue hal-00133088v1
Simultaneous localization of MLL, AF4 and ENL genes in interphase nuclei by 3D-FISH: MLL translocation revisited. Michaël Gué,Jian-Sheng Sun,Thomas Boudier BMC Cancer, 2006, 6, pp.20. ⟨10.1186/1471-2407-6-20⟩ Article dans une revue inserm-00089199v1
A public software for energy filtering transmission electron tomography (EFTET-J): application to the study of granular inclusions in bacteria from Riftia pachyptila Thomas Boudier,Jean-Pierre Lechaire,Ghislaine Frebourg,C. Messaoudi,C. Moryet al. Journal of Structural Biology, 2005, 151, pp.151-159 Article dans une revue hal-00198917v1

Communication dans un congrès (2)

A dictionary-based approach to reduce noise in fluorescent microscopy images Lamees Nasser,Paula Coronado,Etienne David,Thomas Boudier 2017 IEEE 2nd International Conference on Signal and Image Processing (ICSIP), Aug 2017, Singapore, France. pp.144-148, ⟨10.1109/SIPROCESS.2017.8124522⟩ Communication dans un congrès hal-02090787v1
NucleiNet: A convolutional encoder-decoder network for bio-image denoising Zichuan Liu,Yifei Hu,Hang Xu,Lamees Nasser,Philippe Coquetet al. 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Jul 2017, Seogwipo, France. pp.1986-1989, ⟨10.1109/EMBC.2017.8037240⟩ Communication dans un congrès hal-02090779v1