
Vincent Lacroix
62
Documents
Publications
Publications
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Models and Algorithms for Managing Repeats in the De Novo Assembly of Transcriptomes Models and Algorithms for Managing Repeats in the De Novo Assembly of TranscriptomesJOBIM 2025, Jul 2025, Talence (Université de Bordeaux 1), France. 2025
Poster de conférence
hal-05214723
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Identification and quantification of transposable element transcripts using Long-Read RNA-seq in <i>Drosophila</i> germline tissues2024
Pré-publication, Document de travail
hal-04791876
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Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data2017
Pré-publication, Document de travail
hal-01643169
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De novo analysis of splicing from RNA-seq data: models, algorithms and applicationsBioinformatics [q-bio.QM]. Université Claude Bernard Lyon 1, 2023
HDR
tel-04662714
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Navigating in a Sea of Repeats in RNA-seq without DrowningWABI 2014 - 14th International Workshop on Algorithms in Bioinformatics, Sep 2014, Wroclaw, Poland. pp.82-96, ⟨10.1007/978-3-662-44753-6_7⟩
Communication dans un congrès
hal-01079947
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq dataWorkshop on Algorithms in Bioinformatics (WABI), Sep 2013, Nice, France
Communication dans un congrès
hal-00842982
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New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq dataJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2013, Toulouse, France
Communication dans un congrès
hal-02069363
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Procédé de fabrication de Gaz Naturel de Synthèse par couplage d'une méthanation avec une électrolyse de vapeur d'eau à haute températureXIVeme congrès SFGP, Oct 2013, Lyon, France. pp.2012214
Communication dans un congrès
cea-00876659
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Telling Stories Fast12th International Symposium Experimental Algorithms (SEA), Jun 2013, Rome, Italy. pp.200-211
Communication dans un congrès
hal-00835201
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Efficient Bubble Enumeration in Directed GraphsString Processing and Information Retrieval (SPIRE), Oct 2012, Cartagena, Colombia. pp.118-129, ⟨10.1007/978-3-642-34109-0_13⟩
Communication dans un congrès
hal-00738927
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Minimum ratio cover of matrix columns by extreme rays of its induced coneProceedings of the Second international Symposium on Combinatorial Optimization (ISCO), Apr 2012, Athens, Greece. pp.165--177, ⟨10.1007/978-3-642-32147-4_16⟩
Communication dans un congrès
hal-00763453
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NGS without a reference genome, comparison and visualisation of non assembled dataStatistical Methods for Post-Genomic Data (SMPGD), 2011, Paris, France
Communication dans un congrès
hal-00748787
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RNA-seq without a reference genome: a comparison of the mapping and the assembly approachesJOBIM, 2011, Paris, France
Communication dans un congrès
hal-00748612
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Absence of a core metabolic network common to symbiotic bacteria6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives
Communication dans un congrès
hal-02806316
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Metabolic network comparison of bacteria in the context of symbiosisOtto Warburg International Summer School and Research Symposium on Evolutionary Genomics, 2011, Berlin, Germany
Communication dans un congrès
hal-00748784
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Telling StoriesICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩
Communication dans un congrès
hal-00748788
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and AlgorithmsWorkshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩
Communication dans un congrès
hal-00751339
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Identifying SNPs without a reference genome by comparing raw readsString Processing and Information Retrieval, Oct 2010, Los Cabos, Mexico. pp.147-158, ⟨10.1007/978-3-642-16321-0_14⟩
Communication dans un congrès
inria-00514887
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Exact Transcriptome Reconstruction from Short Sequence ReadsInternational Workshop on Algorithms in Bioinformatics (WABI), Sep 2008, Karlsruhe, Germany. pp.50-63, ⟨10.1007/978-3-540-87361-7_5⟩
Communication dans un congrès
istex
hal-00428220
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Metabolic network visualization using constraint planar graph drawing AlgorithmIV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496
Communication dans un congrès
hal-00306676
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Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux MétaboliquesQuatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique
Communication dans un congrès
hal-00306673
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Reaction motifs in metabolic networksInternational Workshop on Algorithms in Bioinformatics (WABI), Oct 2005, Mallorca, Spain. pp.178-191, ⟨10.1007/11557067_15⟩
Communication dans un congrès
istex
hal-00427769
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Analysis of RNA Transcripts by High-Throughput RNA SequencingStefan Stamm, Christopher W. J. Smith, Reinhard Lührmann. Alternative pre-mRNA Splicing: Theory and Protocols, Wiley-VCH Verlag GmbH & Co. KGaA, 2012, 9783527636778. ⟨10.1002/9783527636778.ch50⟩
Chapitre d'ouvrage
hal-00850866
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kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq[Research Report] RR-7852, INRIA. 2011, pp.12
Rapport
(rapport de recherche)
hal-00654249
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Reaction Motifs in Metabolic NetworksRR-5563, INRIA. 2005, pp.14
Rapport
inria-00070443
v1
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Identification de motifs dans les réseaux métaboliques : définitions algorithmes et application au métabolisme d’Escherichia coliEdilivre. 2008, 978-2-35607-642-7
Ouvrages
hal-00434732
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Identification de motifs dans les réseaux métaboliquesAutre [cs.OH]. Université Claude Bernard - Lyon I, 2007. Français. ⟨NNT : ⟩
Thèse
tel-00195401
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