Vincent Lacroix
Publications
Publications
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Models and Algorithms for Managing Repeats in the De Novo Assembly of Transcriptomes Models and Algorithms for Managing Repeats in the De Novo Assembly of TranscriptomesJOBIM 2025, Jul 2025, Talence (Université de Bordeaux 1), France. 2025 |
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Metabolic resistance of the tiger mosquito to pyrethroid insecticides in La Réunion Island likely results from local adaptation2025 |
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Identification and quantification of transposable element transcripts using Long-Read RNA-seq in <i>Drosophila</i> germline tissues2024 |
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Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data2017 |
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De novo analysis of splicing from RNA-seq data: models, algorithms and applicationsBioinformatics [q-bio.QM]. Université Claude Bernard Lyon 1, 2023 |
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Navigating in a Sea of Repeats in RNA-seq without DrowningWABI 2014 - 14th International Workshop on Algorithms in Bioinformatics, Sep 2014, Wroclaw, Poland. pp.82-96, ⟨10.1007/978-3-662-44753-6_7⟩ |
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq dataWorkshop on Algorithms in Bioinformatics (WABI), Sep 2013, Nice, France |
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New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq dataJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2013, Toulouse, France |
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Procédé de fabrication de Gaz Naturel de Synthèse par couplage d'une méthanation avec une électrolyse de vapeur d'eau à haute températureXIVeme congrès SFGP, Oct 2013, Lyon, France. pp.2012214 |
Telling Stories Fast12th International Symposium Experimental Algorithms (SEA), Jun 2013, Rome, Italy. pp.200-211 |
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Efficient Bubble Enumeration in Directed GraphsString Processing and Information Retrieval (SPIRE), Oct 2012, Cartagena, Colombia. pp.118-129, ⟨10.1007/978-3-642-34109-0_13⟩ |
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Minimum ratio cover of matrix columns by extreme rays of its induced coneProceedings of the Second international Symposium on Combinatorial Optimization (ISCO), Apr 2012, Athens, Greece. pp.165--177, ⟨10.1007/978-3-642-32147-4_16⟩ |
RNA-seq without a reference genome: a comparison of the mapping and the assembly approachesJOBIM, 2011, Paris, France |
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Absence of a core metabolic network common to symbiotic bacteria6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives |
NGS without a reference genome, comparison and visualisation of non assembled dataStatistical Methods for Post-Genomic Data (SMPGD), 2011, Paris, France |
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Metabolic network comparison of bacteria in the context of symbiosisOtto Warburg International Summer School and Research Symposium on Evolutionary Genomics, 2011, Berlin, Germany |
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Telling StoriesICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩ |
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and AlgorithmsWorkshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩ |
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Identifying SNPs without a reference genome by comparing raw readsString Processing and Information Retrieval, Oct 2010, Los Cabos, Mexico. pp.147-158, ⟨10.1007/978-3-642-16321-0_14⟩ |
Exact Transcriptome Reconstruction from Short Sequence ReadsInternational Workshop on Algorithms in Bioinformatics (WABI), Sep 2008, Karlsruhe, Germany. pp.50-63, ⟨10.1007/978-3-540-87361-7_5⟩ |
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Metabolic network visualization using constraint planar graph drawing AlgorithmIV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496 |
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Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux MétaboliquesQuatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique |
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Reaction motifs in metabolic networksInternational Workshop on Algorithms in Bioinformatics (WABI), Oct 2005, Mallorca, Spain. pp.178-191, ⟨10.1007/11557067_15⟩ |
Analysis of RNA Transcripts by High-Throughput RNA SequencingStefan Stamm, Christopher W. J. Smith, Reinhard Lührmann. Alternative pre-mRNA Splicing: Theory and Protocols, Wiley-VCH Verlag GmbH & Co. KGaA, 2012, 9783527636778. ⟨10.1002/9783527636778.ch50⟩ |
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kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq[Research Report] RR-7852, INRIA. 2011, pp.12 |
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Reaction Motifs in Metabolic NetworksRR-5563, INRIA. 2005, pp.14 |
Identification de motifs dans les réseaux métaboliques : définitions algorithmes et application au métabolisme d’Escherichia coliEdilivre. 2008, 978-2-35607-642-7 |
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Identification de motifs dans les réseaux métaboliquesAutre [cs.OH]. Université Claude Bernard - Lyon I, 2007. Français. ⟨NNT : ⟩ |