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Vincent Ranwez

Professeur à l'Institut Agro de Montpellier. Equipe Ge2pop, UMR institut AGAP.
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  • https://sites.google.com/site/ranwez/

Publications

freddelsuc
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Aligning Protein-Coding Nucleotide Sequences with MACSE

Vincent Ranwez , Nathalie Chantret , Frédéric Delsuc
Methods in Molecular Biology vol. 2231: Multiple Sequence Alignment., 2231, pp.51-70, 2021, ⟨10.1007/978-1-0716-1036-7_4⟩
Chapitre d'ouvrage hal-03099847v1
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Accurate alignment of (meta)barcoding data sets using MACSE

Frédéric Delsuc , Vincent Ranwez
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, 2.3, No commercial publisher | Authors open access book, pp.2.3:1--2.3:31, 2020
Chapitre d'ouvrage hal-02541199v1
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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Rémi Allio , Frédéric Delsuc , Khalid Belkhir , Emmanuel J P Douzery , Vincent Ranwez
Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩
Article dans une revue hal-04266876v2
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OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Celine Scornavacca , Khalid Belkhir , Jimmy Lopez , Rémy Dernat , Frédéric Delsuc
Molecular Biology and Evolution, 2019, 36 (4), pp.861-862. ⟨10.1093/molbev/msz015⟩
Article dans une revue hal-02139915v1
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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Vincent Ranwez , Emmanuel J.P. Douzery , Cédric Cambon , Nathalie N. Chantret , Frédéric Delsuc
Molecular Biology and Evolution, 2018, 35 (10), pp.2582 - 2584. ⟨10.1093/molbev/msy159⟩
Article dans une revue hal-01925698v1
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Pitfalls in supermatrix phylogenomics

Herve Philippe , Damien M. de Vienne , Vincent Ranwez , Béatrice Roure , Denis Baurain
European Journal of Taxonomy, 2017, 283, pp.1-25. ⟨10.5852/ejt.2017.283⟩
Article dans une revue hal-01606389v1
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

Emmanuel J.P. Douzery , Celine Scornavacca , Jonathan Romiguier , Khalid Belkhir , Nicolas Galtier
Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩
Article dans une revue hal-01133634v1
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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placentalmammals

Jonathan Romiguier , Vincent Ranwez , Frédéric Delsuc , Nicolas Galtier , Emmanuel J.P. Douzery
Molecular Biology and Evolution, 2013, 30 (9), pp.2134-2144. ⟨10.1093/molbev/mst116⟩
Article dans une revue hal-01268462v1
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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez , Sébastien Harispe , Frédéric Delsuc , Emmanuel J.P. Douzery
PLoS ONE, 2011, 6 (9), ⟨10.1371/journal.pone.0022594⟩
Article dans une revue hal-01773250v1
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PhyloExplorer: a web server to validate, explore and query phylogenetic trees

Vincent Ranwez , Nicolas Clairon , Frédéric Delsuc , Saeed Pourali , Nicolas Auberval
BMC Evolutionary Biology, 2009, 9, pp.108. ⟨10.1186/1471-2148-9-108⟩
Article dans une revue lirmm-00396040v1
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OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.

Vincent Ranwez , Frédéric Delsuc , Sylvie Ranwez , Khalid Belkhir , Marie-Ka Tilak
BMC Evolutionary Biology, 2007, 7, pp.241. ⟨10.1186/1471-2148-7-241⟩
Article dans une revue halsde-00315511v1