MARCHAND MARCHAND

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Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification

Louna Fruchard , Anamaria Babosan , Andre Carvalho , Manon Lang , Blaise Li et al.
eLife, 2025, 13, pp.RP96317. ⟨10.7554/eLife.96317.3⟩
Article dans une revue hal-05029047 v1

TGF-β2 Induces Ribosome Activity, Alters Ribosome Composition and Inhibits IRES-Mediated Translation in Chondrocytes

Guus van den Akker , Alzbeta Chabronova , Bas Housmans , Laura van der Vloet , Don Surtel et al.
International Journal of Molecular Sciences, 2024, 25 (9), pp.5031. ⟨10.3390/ijms25095031⟩
Article dans une revue hal-04934350 v1
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Exploring a unique class of flavoenzymes: Identification and biochemical characterization of ribosomal RNA dihydrouridine synthase

Sabrine Toubdji , Quentin Thullier , Lea-Marie Kilz , V. Marchand , Yifeng Yuan et al.
Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (32), pp.e2401981121. ⟨10.1073/pnas.2401981121⟩
Article dans une revue hal-04734945 v1
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Differential redox sensitivity of tRNA dihydrouridylation

Lea-Marie Kilz , Simone Zimmermann , Virginie Marchand , Valérie Bourguignon , Claudia Sudol et al.
Nucleic Acids Research, 2024, 52 (21), pp.12784-12797. ⟨10.1093/nar/gkae964⟩
Article dans une revue (article de synthèse) hal-04911631 v1
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Functional redundancy in tRNA dihydrouridylation

Claudia Sudol , Lea-Marie Kilz , V. Marchand , Quentin Thullier , Vincent Guérineau et al.
Nucleic Acids Research, 2024, 52 (10), pp.5880-5894. ⟨10.1093/nar/gkae325⟩
Article dans une revue hal-04614743 v1

A DNA Polymerase Variant Senses the Epigenetic Marker 5‐Methylcytosine by Increased Misincorporation

Melanie Henkel , Alexander Fillbrunn , Virginie Marchand , Govindan Raghunathan , Michael Berthold et al.
Angewandte Chemie International Edition, 2024, 63 (48), pp.e202413304. ⟨10.1002/anie.202413304⟩
Article dans une revue hal-04939883 v1

Selective RNA pseudouridinylation in situ by circular gRNAs in designer organelles

Lukas Schartel , Cosimo Jann , Anna Wierczeiko , Tamer Butto , Stefan Mündnich et al.
Nature Communications, 2024, 15 (1), pp.9177. ⟨10.1038/s41467-024-53403-1⟩
Article dans une revue hal-04939840 v1

Comprehensive map of ribosomal 2′-O-methylation and C/D box snoRNAs in Drosophila melanogaster

Athena Sklias , Sonia Cruciani , V. Marchand , Mariangela Spagnuolo , Guillaume Lavergne et al.
Nucleic Acids Research, 2024, 52 (6), pp.2848-2864. ⟨10.1093/nar/gkae139⟩
Article dans une revue hal-04934064 v1
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The dual life of disordered lysine-rich domains of snoRNPs in rRNA modification and nucleolar compaction

Carine Dominique , Nana Kadidia Maiga , Alfonso Méndez-Godoy , Benjamin Pillet , Hussein Hamze et al.
Nature Communications, 2024, Nat Commun. 2024 Oct 31;15:9415. doi: 10.1038/s41467-024-53805-1, 15 (1), pp.9415. ⟨10.1038/s41467-024-53805-1⟩
Article dans une revue hal-04797120 v1
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Quantitative Spinal Cord Imaging: Early ALS Diagnosis and Monitoring of Disease Progression

M. Khamaysa , M. El Mendili , V. Marchand , G. Querin , P.-F. Pradat
Revue Neurologique, 2024, ⟨10.1016/j.neurol.2024.10.005⟩
Article dans une revue (article de synthèse) hal-04793630 v1

Mapping the tRNA modification landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse

Samia Quaiyum , Jingjing Sun , V. Marchand , Guangxin Sun , Colbie Reed et al.
Frontiers in Microbiology, 2024, 15, pp.1369018. ⟨10.3389/fmicb.2024.1369018⟩
Article dans une revue hal-04934028 v1

Quantification of substoichiometric modification reveals global tsRNA hypomodification, preferences for angiogenin-mediated tRNA cleavage, and idiosyncratic epitranscriptomes of human neuronal cell-lines

Florian Pichot , Marion Hogg , Virginie Marchand , Valérie Bourguignon , Elisabeth Jirström et al.
Computational and Structural Biotechnology Journal, 2023, 21, pp.401-417. ⟨10.1016/j.csbj.2022.12.020⟩
Article dans une revue hal-03930749 v1

A dual-purpose polymerase engineered for direct sequencing of pseudouridine and queuosine

Luisa Huber , Navpreet Kaur , Melanie Henkel , Virginie Marchand , Yuri Motorin et al.
Nucleic Acids Research, 2023, 51 (8), pp.3971-3987. ⟨10.1093/nar/gkad177⟩
Article dans une revue hal-04067720 v1

Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

Morghan Lucas , Leszek Pryszcz , Rebeca Medina , Ivan Milenkovic , Noelia Camacho et al.
Nature Biotechnology, 2023, ⟨10.1038/s41587-023-01743-6⟩
Article dans une revue hal-04067699 v1

METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

Raquel García-Vílchez , Ana Añazco-Guenkova , Sabine Dietmann , Judith López , Virginia Morón-Calvente et al.
Molecular Cancer, 2023, 22 (1), pp.119. ⟨10.1186/s12943-023-01809-8⟩
Article dans une revue hal-04187091 v1

FUS regulates a subset of snoRNA expression and modulates the level of rRNA modifications

Kishor Gawade , Patrycja Plewka , Sophia Häfner , Anders Lund , Virginie Marchand et al.
Scientific Reports, 2023, 13 (1), pp.2974. ⟨10.1038/s41598-023-30068-2⟩
Article dans une revue (article de synthèse) hal-04015688 v1

Depletion of SNORA33 Abolishes ψ of 28S-U4966 and Affects the Ribosome Translational Apparatus

Alzbeta Chabronova , Guus van den Akker , Bas Housmans , Marjolein Caron , Andy Cremers et al.
International Journal of Molecular Sciences, 2023, 24 (16), pp.12578. ⟨10.3390/ijms241612578⟩
Article dans une revue hal-04933978 v1

Ribosomal RNA-based epitranscriptomic regulation of chondrocyte translation and proteome in osteoarthritis

Alzbeta Chabronova , Guus G.H. van den Akker , Bas A.C. Housmans , Marjolein M.J. Caron , Andy Cremers et al.
Osteoarthritis and Cartilage, 2023, ⟨10.1016/j.joca.2022.12.010⟩
Article dans une revue hal-03930713 v1
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Nicotianamine synthase activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis

Charlotte Montacié , Christophe Riondet , Lili Wei , Tommy Darrière , Alizée Weiss et al.
Journal of Experimental Botany, 2023, 74 (15), pp.4384-4400. ⟨10.1093/jxb/erad180⟩
Article dans une revue hal-04097969 v1

The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance

Mira Brazane , Dilyana Dimitrova , Julien Pigeon , Chiara Paolantoni , Tao Ye et al.
Life Science Alliance, 2023, 6 (4), pp.e202201877. ⟨10.26508/lsa.202201877⟩
Article dans une revue hal-03967369 v1

Synthesis of point-modified mRNA

Jasmin Hertler , Kaouthar Slama , Benedikt Schober , Zeynep Özrendeci , Virginie Marchand et al.
Nucleic Acids Research, 2022, 50 (20), pp.e115. ⟨10.1093/nar/gkac719⟩
Article dans une revue hal-03778358 v1

Studies of mutations of assembly factor Hit 1 in budding yeast suggest translation defects as the molecular basis for PEHO syndrome

R. Elizabeth Dreggors-Walker , Lauren Cohen , Sohail Khoshnevis , Virginie Marchand , Yuri Motorin et al.
Journal of Biological Chemistry, 2022, 298 (9), pp.102261. ⟨10.1016/j.jbc.2022.102261⟩
Article dans une revue hal-03727002 v1

Systematic mapping of rRNA 2’-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis

Jonathan Delhermite , Lionel Tafforeau , Sunny Sharma , Virginie Marchand , Ludivine Wacheul et al.
PLoS Genetics, 2022, 18 (1), pp.e1010012. ⟨10.1371/journal.pgen.1010012⟩
Article dans une revue hal-03537766 v1

SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA

Shovamayee Maharana , Stefanie Kretschmer , Susan Hunger , Xiao Yan , David Kuster et al.
Molecular Cell, 2022, 82 (19), pp.3712-3728.e10. ⟨10.1016/j.molcel.2022.08.031⟩
Article dans une revue hal-03787894 v1

Ribosomal RNA 2′- O -methylations regulate translation by impacting ribosome dynamics

Sohail Khoshnevis , R. Elizabeth Dreggors-Walker , Virginie Marchand , Yuri Motorin , Homa Ghalei
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (12), pp.e2117334119. ⟨10.1073/pnas.2117334119⟩
Article dans une revue hal-03612834 v1
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Machine learning algorithm for precise prediction of 2’-O-methylation (Nm) sites from experimental RiboMethSeq datasets

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Methods, 2022, 203, pp.311-321. ⟨10.1016/j.ymeth.2022.03.007⟩
Article dans une revue hal-03616347 v1

Pseudouridylation of Epstein-Barr Virus Noncoding RNA EBER2 Facilitates Lytic Replication

Belle Henry , Virginie Marchand , Brent Schlegel , Mark Helm , Yuri Motorin et al.
RNA, 2022, pp.rna.079219.122. ⟨10.1261/rna.079219.122⟩
Article dans une revue hal-03778341 v1

Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update

Yuri Motorin , Virginie Marchand
Genes, 2021, 12 (2), pp.278. ⟨10.3390/genes12020278⟩
Article dans une revue hal-03165905 v1
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Implication of repeat insertion domains in the trans -activity of the long non-coding RNA ANRIL

Charbel Alfeghaly , Aymeric Sanchez , Raphael Rouget , Quentin Thuillier , Valérie Igel-Bourguignon et al.
Nucleic Acids Research, 2021, 49 (9), pp.4954-4970. ⟨10.1093/nar/gkab245⟩
Article dans une revue hal-03202552 v1

Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs

Eva Schöller , James Marks , Virginie Marchand , Astrid Bruckmann , Christopher Powell et al.
Molecular Cell, 2021, 81 (23), pp.4810-4825.e12. ⟨10.1016/j.molcel.2021.10.018⟩
Article dans une revue hal-03429971 v1

Detection and functions of viral RNA modifications: perspectives in biology and medicine

Virginie Marchand , Yuri Motorin
Virologie, 2021, 25 (2), pp.5-20. ⟨10.1684/vir.2021.0884⟩
Article dans une revue hal-03229182 v1
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Analysis of pseudouridines and other RNA modifications using hydraPsiSeq protocol

Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Article dans une revue hal-03335167 v1
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FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell

Sébastien Relier , Julie Ripoll , Hélène Guillorit , Amandine Amalric , Cyrinne Achour et al.
Nature Communications, 2021, 12 (1), pp.1716. ⟨10.1038/s41467-021-21758-4⟩
Article dans une revue hal-03178788 v2

Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo

Matthias Heiss , Felix Hagelskamp , Virginie Marchand , Yuri Motorin , Stefanie Kellner
Nature Communications, 2021, 12 (1), pp.389. ⟨10.1038/s41467-020-20576-4⟩
Article dans une revue hal-03114535 v1
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Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants

Jacinthe Azevedo-Favory , Christine Gaspin , Lilia Ayadi , Charlotte Montacié , Virginie Marchand et al.
RNA Biology, 2021, 18 (11), pp.1-18. ⟨10.1080/15476286.2020.1869892⟩
Article dans une revue (article de synthèse) hal-03150158 v1
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Instrumental analysis of RNA modifications

Yasemin Yoluç , Gregor Ammann , Pierre Barraud , Manasses Jora , Patrick A Limbach et al.
Critical Reviews in Biochemistry and Molecular Biology, 2021, 56 (2), pp.178-204. ⟨10.1080/10409238.2021.1887807⟩
Article dans une revue hal-03402194 v1

Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA

Yuri Motorin , Marc Quinternet , Wassim Rhalloussi , Virginie Marchand
RNA Biology, 2021, pp.1-10. ⟨10.1080/15476286.2021.1974750⟩
Article dans une revue hal-03341858 v1

Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Genes, 2021, 12 (1), pp.81. ⟨10.3390/genes12010081⟩
Article dans une revue hal-03114536 v1

Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response

Adeline Galvanin , Lea-Marie Vogt , Antonia Grober , Isabel Freund , Lilia Ayadi et al.
Nucleic Acids Research, 2020, 48 (22), pp.12833-12844. ⟨10.1093/nar/gkaa1123⟩
Article dans une revue hal-03071703 v1
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Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes

Stephan Werner , Lukas Schmidt , Virginie Marchand , Thomas Kemmer , Christoph Falschlunger et al.
Nucleic Acids Research, 2020, 48 (7), pp.3734 - 3746. ⟨10.1093/nar/gkaa113⟩
Article dans une revue hal-02492494 v1

NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination

Stephan Werner , Aurellia Galliot , Florian Pichot , Thomas Kemmer , Virginie Marchand et al.
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1173⟩
Article dans une revue hal-03093648 v1
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Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

Virginie Marcel , Janice Kielbassa , Virginie Marchand , Kundhavai s Natchiar , Hermes Paraqindes et al.
NAR Cancer, 2020, 2 (4), pp.1-12. ⟨10.1093/narcan/zcaa036⟩
Article dans une revue inserm-03103238 v1
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2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations

Carole Trzaska , Séverine Amand , Christine Bailly , Catherine Leroy , Virginie Marchand et al.
Nature Communications, 2020, 11 (1), pp.1509. ⟨10.1038/s41467-020-15140-z⟩
Article dans une revue hal-02515244 v1
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Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing

Charif Rashka , Sébastien Hergalant , Natacha Dreumont , Abderrahim Oussalah , Jean-Michel Camadro et al.
Human Molecular Genetics, 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩
Article dans une revue hal-03100129 v1

Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides

Marco Kristen , Johanna Plehn , Virginie Marchand , Kristina Friedland , Yuri Motorin et al.
Genes, 2020, 11 (8), pp.950. ⟨10.3390/genes11080950⟩
Article dans une revue hal-02929785 v1

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

Margarita Angelova , Dilyana G Dimitrova , Bruno Da silva , Virginie Marchand , Caroline Jacquier et al.
Nucleic Acids Research, 2020, 48 (4), pp.2050-2072. ⟨10.1093/nar/gkaa002⟩
Article dans une revue hal-02445153 v1

Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2′-O-Methylations in RNA by RiboMethSeq

Florian Pichot , Virginie Marchand , Lilia Ayadi , Valerie Bourguignon-Igel , Mark Helm et al.
Frontiers in Genetics, 2020, 11, pp.38. ⟨10.3389/fgene.2020.00038⟩
Article dans une revue hal-02498335 v1
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Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168

Valerie de Crecy-Lagard , Robert J. Ross , Marshall Jaroch , Virginie Marchand , Christina Eisenhart et al.
Biomolecules, 2020, 10 (7), pp.977. ⟨10.3390/biom10070977⟩
Article dans une revue hal-02915956 v1
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HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA

Virginie Marchand , Florian Pichot , Paul Neybecker , Lilia Ayadi , Valérie Bourguignon-Igel et al.
Nucleic Acids Research, 2020, 48 (19), pp.e110. ⟨10.1093/nar/gkaa769⟩
Article dans une revue hal-02957799 v1

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms

Isabel Freund , Daniel Buhl , Sébastien Boutin , Annika Kotter , Florian Pichot et al.
RNA, 2019, 25 (7), pp.869-880. ⟨10.1261/rna.070243.118⟩
Article dans une revue hal-02113259 v1
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FTSJ3 is an RNA 2′-O-methyltransferase recruited by HIV to avoid innate immune sensing

Mathieu Ringeard , Virginie Marchand , Etienne Decroly , Yuri Motorin , Yamina Bennasser
Nature, 2019, 565 (7740), pp.500-504. ⟨10.1038/s41586-018-0841-4⟩
Article dans une revue hal-01981983 v1

Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance

Jiajie Wei , Rigel Kishton , Matthew Angel , Crystal Conn , Nicole Dalla Venezia et al.
Article dans une revue hal-02007743 v1

Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures

Lukas Schmidt , Stephan Werner , Thomas Kemmer , Stefan Niebler , Marco Kristen et al.
Frontiers in Genetics, 2019, 10, pp.876. ⟨10.3389/fgene.2019.00876⟩
Article dans une revue hal-02317684 v1

Absolute quantification of noncoding RNA by microscale thermophoresis

Dominik Jacob , Kathrin Thüring , Aurellia Galliot , Virginie Marchand , Adeline Galvanin et al.
Angewandte Chemie International Edition, 2019, 58 (28), pp.9565-9569. ⟨10.1002/anie.201814377⟩
Article dans une revue hal-02078064 v1
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Diversity and heterogeneity of extracellular RNA in human plasma

Adeline Galvanin , Gabriel Dostert , Lilia Ayadi , Virginie Marchand , Emilie Velot et al.
Biochimie, 2019, 164, pp.22-36. ⟨10.1016/j.biochi.2019.05.011⟩
Article dans une revue hal-02140106 v1

A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure

Christina Dal Magro , Patrick Keller , Annika Kotter , Stephan Werner , Victor Duarte et al.
Angewandte Chemie International Edition, 2018, 57 (26), pp.7893-7897. ⟨10.1002/anie.201713188⟩
Article dans une revue hal-01801500 v1
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A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients

Jean-Louis Guéant , Céline Chery , Abderrahim Oussalah , Javad Nadaf , David Coelho et al.
Nature Communications, 2018, 9 (1), pp.67. ⟨10.1038/s41467-017-02306-5⟩
Article dans une revue hal-01801484 v1

Detection and Analysis of RNA Ribose 2′-O-Methylations: Challenges and Solutions

Yuri Motorin , Virginie Marchand
Genes, 2018, 9 (12), pp.642. ⟨10.3390/genes9120642⟩
Article dans une revue hal-01969342 v1

AlkAniline-Seq: Profiling of m 7 G and m 3 C RNA Modifications at Single Nucleotide Resolution

Virginie Marchand , Lilia Ayadi , Felix Ernst , Jasmin Hertler , Valerie Bourguignon-Igel et al.
Angewandte Chemie International Edition, 2018, 57 (51), pp.16785-16790. ⟨10.1002/anie.201810946⟩
Article dans une revue hal-01928435 v1
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RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions

Lilia Ayadi , Adeline Galvanin , Florian Pichot , Virginie Marchand , Yuri Motorin
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2018, 1862 (3), pp.253-269. ⟨10.1016/j.bbagrm.2018.11.009⟩
Article dans une revue hal-01969343 v1
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Double methylation of tRNA-U54 to 2′-O-methylthymidine (Tm) synergistically decreases immune response by Toll-like receptor 7

Patrick Keller , Isabel Freund , Virginie Marchand , Guillaume Bec , Raven Huang et al.
Nucleic Acids Research, 2018, 46 (18), pp.9764-9775. ⟨10.1093/nar/gky644⟩
Article dans une revue hal-01864193 v1

Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes

Jenny Erales , Virginie Marchand , Baptiste Panthu , Sandra Gillot , Stephane BELIN et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (49), pp.12934-12939. ⟨10.1073/pnas.1707674114⟩
Article dans une revue hal-02191312 v1

Engineering of a DNA Polymerase for Direct m 6 A Sequencing

Joos Aschenbrenner , Stephan Werner , Virginie Marchand , Martina Adam , Yuri Motorin et al.
Angewandte Chemie International Edition, 2017, 57 (2), pp.417 - 421. ⟨10.1002/anie.201710209⟩
Article dans une revue hal-01801461 v1
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High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol)

Virginie Marchand , Lilia Ayadi , Aseel El Hajj , Florence Blanloeil-Oillo , Mark Helm et al.
Methods in Molecular Biology, 2017, 1562, pp.171-187. ⟨10.1007/978-1-4939-6807-7_12⟩
Article dans une revue hal-01799289 v1
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Next‐Generation Sequencing‐Based RiboMethSeq Protocol for Analysis of tRNA 2′‐O‐Methylation

Virginie Marchand , Florian Pichot , Kathrin Thüring , Lilia Ayadi , Isabel Freund et al.
Biomolecules, 2017, 7 (1), pp.13. ⟨10.3390/biom7010013⟩
Article dans une revue hal-01799272 v1

Quantification of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol).

Lilia Ayadi , Yuri Motorin , Virginie Marchand
Methods in Molecular Biology, 2017, pp.29-48. ⟨10.1007/978-1-4939-7213-5_2⟩
Article dans une revue hal-01661952 v1
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Identification of sites of 2′-O-methylation vulnerability in human ribosomal RNAs by systematic mapping

Sunny Sharma , Virginie Marchand , Yuri Motorin , Denis Lafontaine
Scientific Reports, 2017, 7 (1), pp.11490. ⟨10.1038/s41598-017-09734-9⟩
Article dans une revue hal-01799319 v1

Multiplexed targeted sequencing of recurrent fusion genes in acute leukaemia

P. Ruminy , V. Marchand , N Buchbinder , T Larson , B Joly et al.
Leukemia, 2016, 30 (3), pp.757-760. ⟨10.1038/leu.2015.177⟩
Article dans une revue hal-02331597 v1

Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA

Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin
Nucleic Acids Research, 2016, 44 (16), ⟨10.1093/nar/gkw547⟩
Article dans une revue hal-01452312 v1

High-throughput sequencing for 1-methyladenosine (m1A) mapping in RNA

Lyudmil Tserovski , Virginie Marchand , Ralf Hauenschild , Florence Blanloeil-Oillo , Mark Helm et al.
Methods, 2016, 107, pp.110-121. ⟨10.1016/j.ymeth.2016.02.012⟩
Article dans une revue hal-01474109 v1

Quantification and quality control of a small non-coding RNA preparation.

V. Marchand , Christiane Branlant
Methods in Molecular Biology, 2015, pp.17-28. ⟨10.1007/978-1-4939-2547-6_3⟩
Article dans une revue hal-01866546 v1

The EJC Binding and Dissociating Activity of PYM Is Regulated in Drosophila

Sanjay Ghosh , Ales Obrdlik , V. Marchand , Anne Ephrussi
PLoS Genetics, 2014, 10 (6), ⟨10.1371/journal.pgen.1004455⟩
Article dans une revue hal-01866561 v1

An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes

V. Marchand , Imre Gaspar , Anne Ephrussi
Current Opinion in Cell Biology, 2012, 24 (2), pp.202 - 210. ⟨10.1016/j.ceb.2011.12.014⟩
Article dans une revue hal-01866924 v1

Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA

Sanjay Ghosh , V. Marchand , Imre Gaspar , Anne Ephrussi
Nature Structural and Molecular Biology, 2012, 19 (4), pp.441 - 449. ⟨10.1038/nsmb.2257⟩
Article dans une revue istex hal-01866563 v1
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Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein

Aileen Bar , Virginie Marchand , Georges Khoury , Natacha Dreumont , Annie Mougin et al.
Nucleic Acids Research, 2011, 39 (8), pp.3388-3403. ⟨10.1093/nar/gkq1114⟩
Article dans une revue hal-02270591 v1

Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K.

V. Marchand , Maryline Santerre , Christelle Aigueperse , Laetitia Fouillen , Jean-Michel Saliou et al.
RNA Biology, 2011, pp.325-42
Article dans une revue hal-01866938 v1

Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization

Shih-Jung Fan , V. Marchand , Anne Ephrussi
PLoS ONE, 2011, 6 (5), ⟨10.1371/journal.pone.0020612⟩
Article dans une revue hal-01866927 v1

Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action

Jamal Tazi , Nadia Bakkour , V. Marchand , Lilia Ayadi , Amina Aboufirassi et al.
FEBS Journal, 2010, 277 (4), pp.867 - 876. ⟨10.1111/j.1742-4658.2009.07522.x⟩
Article dans une revue hal-01866941 v1
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2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association

Sylvain Maenner , Magali Blaud , Laetitia Fouillen , Anne Savoye , Virginie Marchand et al.
PLoS Biology, 2010, 8 (1), pp.e1000276. ⟨10.1371/journal.pbio.1000276⟩
Article dans une revue hal-01715217 v1

Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation.

Florence Besse , Sonia López de Quinto , Virginie Marchand , Alvar Trucco , Anne Ephrussi
Genes and Development, 2009, 23 (2), pp.195-207. ⟨10.1101/gad.505709⟩
Article dans une revue hal-00437642 v1

Role of RNA structure and protein factors in the control of HIV-1 splicing

Jean-Michel Saliou , Cyril Bourgeois , L. Ayadi-Ben Mena , Delphine Ropers , S. Jacquenet et al.
Frontiers in Bioscience-Landmark, 2009, 14, pp.2714-2729
Article dans une revue hal-00793011 v1

Early specific free radical-related cytotoxicity of gas phase cigarette smoke an its paradoxical temporary inhibition of tar. An EPR study with the spin trap DEPMPO .

M. Culcasi , A. Müller , A. Mercier , Clément J.-L. , O. Payet et al.
Chemico-Biological Interactions, 2006, 164, pp.215-231
Article dans une revue hal-00145404 v1

Loss of containment: experimental aerosol rain-out assessment

Jérôme Hocquet , J.C Adrian , M. Godeau , V. Marchand , Jean-Pierre Bigot
Journal of Hazardous Materials, 2002, 93 (1), pp.67-76. ⟨10.1016/S0304-3894(02)00039-0⟩
Article dans une revue istex emse-00506600 v1

A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding.

V. Marchand , Agnès Méreau , Sandrine Jacquenet , Denise Thomas , Annie Mougin et al.
Journal of Molecular Biology, 2002, pp.629-52. ⟨10.1016/S0022-2836(02)00967-1⟩
Article dans une revue istex hal-01866980 v1

Mechanisms and impact of ribosomal RNA methylation in plants

Sara Alina Neumann , Jacinthe Azevedo-Favory , Rémy Merret , Marie-Christine Carpentier , Julien Henry et al.
8ème colloque RNAOcc’ Club RNA Occitanie, Jun 2024, Toulouse, France
Communication dans un congrès hal-04841625 v1

Contribution of epitranscriptomics in the characterization of chondrogenic differentiation of synovial fluid MSCs

Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille et al.
Journée scientifique de l'ED BioSE 2023, May 2023, Vandoeuvre lès Nancy, France
Communication dans un congrès hal-04231079 v1

Apports de l’epitranscriptomique dans la caracterisation de la differenciation chondrogenique de CSMs du liquide synovial

Kevin Bourge , Christel Henrionnet , Virginie Marchand , Didier Mainard , Damien Loeuille et al.
23èmes Journées Françaises de Biologie des Tissus Minéralisés, Société Française de Biologie des Tissus Minéralisés, May 2023, Sète, France
Communication dans un congrès hal-04120387 v1

Rôle de l’épitranscriptomique lors la différenciation chondrogénique des CSMs du liquide synovial en comparaison avec les chondrocytes

Kevin Bourge , Christel Henrionnet , Virginie Marchand , Didier Mainard , Damien Loeuille et al.
97ème congrès de la Société Française de Chirurgie Orthopédique & Traumatologique, Société Française de Chirurgie Orthopédique & Traumatologique, Nov 2023, Paris, France
Communication dans un congrès hal-04371045 v1

Epitranscriptomic mapping of rRNA methylation for the characterization of chondrogenic differentiation of synovial fluid MSCs

Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille et al.
Congrès anniversaire du réseau cartilage de la Grande Région, Sep 2023, Sarrebruck, Germany
Communication dans un congrès hal-04231176 v1

Processing of ribosomal RNA is compromised in A. thaliana upon heat stress

Darriere Tommy , Azevedo-Favory Jacinthe , Anne de Bures , Christine Gaspin , V. Marchand et al.
12ème SifrARN Structure, Integration, Function & Reactivity of RNA, Oct 2022, Bordeaux, France
Communication dans un congrès hal-04842289 v1

Caractérisation de la différenciation chondrocytaire des CSMs du liquide synovial : apports de l’épitranscriptomique

Kevin Bourge , Christel Henrionnet , Virginie Marchand , Didier Mainard , Damien Loeuille et al.
34ème Congrès Français de Rhumatologie, Dec 2021, Paris, France. pp.A285, ⟨10.1016/j.rhum.2021.10.485⟩
Communication dans un congrès hal-03708448 v1

Mapping rRNA 2'-O-Methylations and identification of C/D snoRNAs in Arabidopsis thaliana

Jacinthe Azevedo-Favory , Christine Gaspin , L Ayadi , Charlotte Montacié , V. Marchand et al.
RNAOcc’ Club RNA Occitanie, Jun 2021, Virtuel, France
Communication dans un congrès hal-04843544 v1

Molecular dissection of lncRNA activities: ANRIL as Model System

Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant et al.
Bermuda Principles: Impact on Splicing 3rd Annual Conference, Feb 2019, Southampton, Bermuda
Communication dans un congrès hal-02968414 v1

Molecular dissection of lncRNA activities: ANRIL as Model System

Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant et al.
11th sifrARN, Nov 2018, Vandoeuvre-les-Nancy, France
Communication dans un congrès hal-02968425 v1

High-throughput analysis and biomedical applications of extracellular RNAs

A. Galvanin , G. Dostert , V. Marchand , P. Menu , É. Velot et al.
1er Congrès de la French Society of Extracellular Vesicles (FSEV), Nov 2017, Paris, France
Communication dans un congrès hal-03368989 v1

High-throughput profiling of tRNA 2'-O-methylation in Bacteria

Virginie Marchand , Alexander Dalpke , Mark Helm , Yuri Motorin
Conference Nucleic Acids and Immunity, Jun 2017, Brno, Czech Republic
Communication dans un congrès hal-02946396 v1

GENE EXPRESSION PROFILING USING a RTMLPA ASSAY ALLOWS FOR AN ACCURATE CLASSIFICATION OF PERIPHERAL T-CELL LYMPHOMA AND HIGHLIGHTS NOVEL SUBGROUPS WITHIN PTCLS-NOS

P. Ruminy , F. Drieux , A. Abdel Sater , V. Fataccioli , V. Marchand et al.
14th International Conference on Malignant Lymphoma, Jun 2017, Lugano, Switzerland. pp.74-75, ⟨10.1002/hon.2437_62⟩
Communication dans un congrès hal-02484212 v1

Comprehensive characterization of human extracellular RNAs (exRNAs) in plasma by high- throughput sequencing

Virginie Marchand , Emilie Velot , Yuri Motorin
GBM Meeting 2016 CONGRES RNA BIOCHEMIE A BONN, Oct 2016, Bonn, Germany
Communication dans un congrès hal-02946341 v1

Valeur pronostique de la classification GCB/ABC déterminée par RT-MLPA associée à la TEP dans les lymphomes B diffus à grandes cellules

A. Labois , P. Ruminy , S. Becker , H. Lanic , S. Mareschal et al.
Société Française d’Hématologie, Mar 2016, Paris, France
Communication dans un congrès hal-01658125 v1

Non-coding RNAs and mRNA splicing events as biomarkers of diseases and cell control quality tools, application to heart failure prevention

Virginie Marchand , Valentin Vautrot , Gired Nicolas , Faiez Zannad , Patrick Rossignol et al.
6th International Symposium Europe-China, Jul 2016, Nancy, France
Communication dans un congrès hal-02968456 v1

High-throughput mapping of 2'-O-methylated residues in RNA by next- generation sequencing RNA modification; methylation; high-throughput sequencing; pathology

Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin
10th SifrARN Meeting 2016 SFBBM Toulouse, Mar 2016, Toulouse, France
Communication dans un congrès hal-02946334 v1
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SpinalCOM: Ambulatory monitoring of the Spinal Cord

Olivier Tsiakaka , Mehdi Terosiet , Olivier Romain , H Benali , V Marchand et al.
Colloque du GDR SoC-SiP, Jun 2016, Nantes, France
Communication dans un congrès hal-01337125 v1

Loss of containment: experimental aerosol rain-out assessment

J.C Adrian , R. Lerible , V. Marchand , Jérôme Hocquet , Jean-Pierre Bigot
10th International Symposium on Loss Prevention and Safety Promotion in the Process Industries, 2001, Stockholm, Sweden. ⟨10.1016/B978-044450699-3/50022-7⟩
Communication dans un congrès hal-01350641 v1
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Mechanisms and impact of ribosomal RNA methylation in plants

Sara Alina Neumann , Jacinthe Azevedo-Favory , Rémy Merret , Marie-Christine Carpentier , Julien Henry et al.
The 2024 Post-transcriptional Gene Regulation in Plants meeting, Sep 2024, Banyuls-Sur-Mer, France.
Poster de conférence hal-04841568 v1

impact de la 2’O méthylation de l’ARN génomique du virus Coxsackie B3 sur la dynamique d’infection des cardiomyocytes humains

Rania Allouche , Anne-Laure Lebreil , Fatma Berri , Iouri Motorine , Laurent Andréoletti et al.
Journée Rémoise des Jeunes Chercheurs en Santé, Oct 2024, Reims, France
Poster de conférence hal-04954553 v1

Impact des 2'-O-methylation du génome viral sur la dynamique de réplication du virus Coxsackie B3 dans des cardiomyocytes humains

M. Glenet , Anne-Laure Lebreil , Fatma Berri , V. Marchand , Iouri Motorine et al.
 XXVIème Journées Francophones de Virologie (JFV), Apr 2024, Bruxelle, Belgium
Poster de conférence hal-04954523 v1

From mapping to mechanism: Ribosomal RNA methylation in plants

S A Neumann , J Azevedo-Favory , C Gaspin , V. Marchand , Yuri Motorin et al.
RNAOcc’ Club RNA Occitanie, Jun 2023, Montpellier, France
Poster de conférence hal-04842179 v1

From mapping to mechanism: Ribosome rRNA methylation in plants

Sara Alina Neumann , Jacinthe Azevedo-Favory , Christine Gaspin , V. Marchand , Yuri Motorin et al.
47th FEBS Congress, Jul 2023, Tour, France
Poster de conférence hal-04841651 v1

Mapping rRNA 2'-O-Methylations and identification of C/D snoRNAs in Arabidopsis thaliana

Jacinthe Azevedo-Favory , Christine Gaspin , Lilia Ayadi , Charlotte Montacié , V. Marchand et al.
Ribosome Synthesis, Aug 2022, Engelberg, Switzerland
Poster de conférence hal-04843426 v1
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The lncRNA ANRIL-induced gene modulation depends on its Exon21 enriched in Transposable Elements

Aymeric Sanchez , Charbel Alfeghaly , Lilia Ayadi , Wassim Rhalloussi , Quentin Thuillier et al.
12th SifrARN, Oct 2022, Bordeaux, France
Poster de conférence hal-04577641 v1

Mapping rRNA 2'-O-Methylation by RiboMethSeq and characterization of snoRNAs in Arabidopsis

Charlotte Montacié , V. Marchand , Jacinthe Azevedo-Favory , L Ayadi , Edouard Jobet et al.
24th annual RNA Meetting, Jun 2019, Cracovie, Poland
Poster de conférence hal-04844044 v1

Molecular dissection of lncRNA activities: ANRIL as Model System

Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant et al.
24th Annual Meeting of the RNA society, Jun 2019, Cracovie, Poland
Poster de conférence hal-02968492 v1

Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Computational Epigenomics and Epitranscriptomics, 2624, Springer US, pp.207-223, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2962-8_14⟩
Chapitre d'ouvrage hal-03971146 v1
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Methods to analyze post-transcriptional modifications applied to stable RNAs in <i>Staphylococcus aureus</i>

Roberto Alexander Bahena Ceron , José Jaramillo-Ponce , Hiroki Kanazawa , Laura Antoine , Philippe Wolff et al.
Jan Barciszewski. RNA Structure and Function, 14, Springer International Publishing, pp.233-258, 2023, RNA Technologies, 978-3-031-36390-0. ⟨10.1007/978-3-031-36390-0_11⟩
Chapitre d'ouvrage hal-04781623 v1

Mapping of 7-methylguanosine (m7G), 3-methylcytidine (m3C), dihydrouridine (D) and 5-hydroxycytidine (ho5C) RNA modifications by AlkAniline-Seq

Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Methods in Enzymology, pp.25-47, 2021, ⟨10.1016/bs.mie.2021.06.001⟩
Chapitre d'ouvrage hal-03344110 v1

Isolation, Extraction and Deep-Sequencing Analysis of Extracellular RNAs (exRNAs) from Human Plasma

Virginie Marchand , Adeline Galvanin , Yuri Motorin
Small Non-Coding RNAs, pp.165-182, 2021, ⟨10.1007/978-1-0716-1386-3_15⟩
Chapitre d'ouvrage hal-03190554 v1

AlkAniline-Seq: A Highly Sensitive and Specific Method for Simultaneous Mapping of 7-Methyl-guanosine (m7G) and 3-Methyl-cytosine (m3C) in RNAs by High-Throughput Sequencing

V. Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Methods Mol Biol, 2298, pp.77-95, 2021, ⟨10.1007/978-1-0716-1374-0_5⟩
Chapitre d'ouvrage hal-03266408 v1

Quantitative and Qualitative Assessment of Small RNA Preparations

Virginie Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Yuri Motorin
Small Non-Coding RNAs, 2300, pp.17-29, 2021, ⟨10.1007/978-1-0716-1386-3_3⟩
Chapitre d'ouvrage hal-03190561 v1

Mapping and Quantification of tRNA 2′-O-Methylation by RiboMethSeq

Adeline Galvanin , Lilia Ayadi , Mark Helm , Yuri Motorin , Virginie Marchand
Methods Mol Biol, pp.273-295, 2019, ⟨10.1007/978-1-4939-8808-2_21⟩
Chapitre d'ouvrage hal-01957102 v1

Study of RNA-Protein Interactions and RNA Structure in Ribonucleoprotein Particles (RNPs)

Virginie Marchand , Annie Mougin , Agnès Méreau , Isabelle Behm-Ansmant , Yuri Motorin et al.
Roland K. Hartmann; Albrecht Bindereif; Astrid Schön; Eric Westhof. Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, Wiley-VCH Verlag GmbH & Co. KGaA, pp.975-1016, 2014, 9783527327645. ⟨10.1002/9783527647064.ch44⟩
Chapitre d'ouvrage hal-01957954 v1

Study of RNA-protein interactions and RNA structure in ribonucleoprotein particles (RNP).

Virginie Marchand , Annie Mougin , Agnes Mereau , Christiane Branlant
Prof. Dr. Roland K. Hartmann; Prof. Dr. Albrecht Bindereif; Dr. Astrid Schön; Prof. Dr. Eric Westhof. Handbook on RNA biochemistry, Wiley, pp.172-204, 2005, 9783527308262. ⟨10.1002/9783527619504.ch11⟩
Chapitre d'ouvrage hal-02202223 v1