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Ribosomal RNA-based epitranscriptomic regulation of chondrocyte translation and proteome in osteoarthritis

Alzbeta Chabronova , Guus G.H. van den Akker , Bas A.C. Housmans , Marjolein M.J. Caron , Andy Cremers
Osteoarthritis and Cartilage, 2023, ⟨10.1016/j.joca.2022.12.010⟩
Journal articles hal-03930713v1
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Nicotianamine synthase activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis

Charlotte Montacié , Christophe Riondet , Lili Wei , Tommy Darrière , Alizée Weiss
Journal of Experimental Botany, 2023, 74 (15), pp.4384-4400. ⟨10.1093/jxb/erad180⟩
Journal articles hal-04097969v1

Quantification of substoichiometric modification reveals global tsRNA hypomodification, preferences for angiogenin-mediated tRNA cleavage, and idiosyncratic epitranscriptomes of human neuronal cell-lines

Florian Pichot , Marion Hogg , Virginie Marchand , Valérie Bourguignon , Elisabeth Jirström
Computational and Structural Biotechnology Journal, 2023, 21, pp.401-417. ⟨10.1016/j.csbj.2022.12.020⟩
Journal articles hal-03930749v1

Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

Morghan Lucas , Leszek Pryszcz , Rebeca Medina , Ivan Milenkovic , Noelia Camacho
Nature Biotechnology, 2023, ⟨10.1038/s41587-023-01743-6⟩
Journal articles hal-04067699v1

The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance

Mira Brazane , Dilyana Dimitrova , Julien Pigeon , Chiara Paolantoni , Tao Ye
Life Science Alliance, 2023, 6 (4), pp.e202201877. ⟨10.26508/lsa.202201877⟩
Journal articles hal-03967369v1

Ribosomal RNA 2′- O -methylations regulate translation by impacting ribosome dynamics

Sohail Khoshnevis , R. Elizabeth Dreggors-Walker , Virginie Marchand , Yuri Motorin , Homa Ghalei
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (12), pp.e2117334119. ⟨10.1073/pnas.2117334119⟩
Journal articles hal-03612834v1

Synthesis of point-modified mRNA

Jasmin Hertler , Kaouthar Slama , Benedikt Schober , Zeynep Özrendeci , Virginie Marchand
Nucleic Acids Research, 2022, 50 (20), pp.e115. ⟨10.1093/nar/gkac719⟩
Journal articles hal-03778358v1

Systematic mapping of rRNA 2’-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis

Jonathan Delhermite , Lionel Tafforeau , Sunny Sharma , Virginie Marchand , Ludivine Wacheul
PLoS Genetics, 2022, 18 (1), pp.e1010012. ⟨10.1371/journal.pgen.1010012⟩
Journal articles hal-03537766v1

Studies of mutations of assembly factor Hit 1 in budding yeast suggest translation defects as the molecular basis for PEHO syndrome

R. Elizabeth Dreggors-Walker , Lauren Cohen , Sohail Khoshnevis , Virginie Marchand , Yuri Motorin
Journal of Biological Chemistry, 2022, 298 (9), pp.102261. ⟨10.1016/j.jbc.2022.102261⟩
Journal articles hal-03727002v1

SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA

Shovamayee Maharana , Stefanie Kretschmer , Susan Hunger , Xiao Yan , David Kuster
Molecular Cell, 2022, 82 (19), pp.3712-3728.e10. ⟨10.1016/j.molcel.2022.08.031⟩
Journal articles hal-03787894v1

Machine learning algorithm for precise prediction of 2’-O-methylation (Nm) sites from experimental RiboMethSeq datasets

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Methods, 2022, 203, pp.311-321. ⟨10.1016/j.ymeth.2022.03.007⟩
Journal articles hal-03616347v1

Pseudouridylation of Epstein-Barr Virus Noncoding RNA EBER2 Facilitates Lytic Replication

Belle Henry , Virginie Marchand , Brent Schlegel , Mark Helm , Yuri Motorin
RNA, 2022, pp.rna.079219.122. ⟨10.1261/rna.079219.122⟩
Journal articles hal-03778341v1
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Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants

Jacinthe Azevedo-Favory , Christine Gaspin , Lilia Ayadi , Charlotte Montacié , Virginie Marchand
RNA Biology, 2021, 18 (11), pp.1-18. ⟨10.1080/15476286.2020.1869892⟩
Journal articles hal-03150158v1

Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs

Eva Schöller , James Marks , Virginie Marchand , Astrid Bruckmann , Christopher Powell
Molecular Cell, 2021, 81 (23), pp.4810-4825.e12. ⟨10.1016/j.molcel.2021.10.018⟩
Journal articles hal-03429971v1
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Implication of repeat insertion domains in the trans -activity of the long non-coding RNA ANRIL

Charbel Alfeghaly , Aymeric Sanchez , Raphael Rouget , Quentin Thuillier , Valérie Igel-Bourguignon
Nucleic Acids Research, 2021, 49 (9), pp.4954-4970. ⟨10.1093/nar/gkab245⟩
Journal articles hal-03202552v1

Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update

Yuri Motorin , Virginie Marchand
Genes, 2021, 12 (2), pp.278. ⟨10.3390/genes12020278⟩
Journal articles hal-03165905v1

Analysis of pseudouridines and other RNA modifications using hydraPsiSeq protocol

Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Journal articles hal-03335167v1

Detection and functions of viral RNA modifications: perspectives in biology and medicine

Virginie Marchand , Yuri Motorin
Virologie, 2021, 25 (2), pp.5-20. ⟨10.1684/vir.2021.0884⟩
Journal articles hal-03229182v1
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FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell

Sébastien Relier , Julie Ripoll , Hélène Guillorit , Amandine Amalric , Cyrinne Achour
Nature Communications, 2021, 12 (1), pp.1716. ⟨10.1038/s41467-021-21758-4⟩
Journal articles hal-03178788v2

Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA

Yuri Motorin , Marc Quinternet , Wassim Rhalloussi , Virginie Marchand
RNA Biology, 2021, pp.1-10. ⟨10.1080/15476286.2021.1974750⟩
Journal articles hal-03341858v1

Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Genes, 2021, 12 (1), pp.81. ⟨10.3390/genes12010081⟩
Journal articles hal-03114536v1
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Instrumental analysis of RNA modifications

Yasemin Yoluç , Gregor Ammann , Pierre Barraud , Manasses Jora , Patrick A Limbach
Critical Reviews in Biochemistry and Molecular Biology, 2021, 56 (2), pp.178-204. ⟨10.1080/10409238.2021.1887807⟩
Journal articles hal-03402194v1

Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo

Matthias Heiss , Felix Hagelskamp , Virginie Marchand , Yuri Motorin , Stefanie Kellner
Nature Communications, 2021, 12 (1), pp.389. ⟨10.1038/s41467-020-20576-4⟩
Journal articles hal-03114535v1

Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides

Marco Kristen , Johanna Plehn , Virginie Marchand , Kristina Friedland , Yuri Motorin
Genes, 2020, 11 (8), pp.950. ⟨10.3390/genes11080950⟩
Journal articles hal-02929785v1

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

Margarita Angelova , Dilyana G Dimitrova , Bruno Da silva , Virginie Marchand , Caroline Jacquier
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa002⟩
Journal articles hal-02445153v1

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

Margarita Angelova , Dilyana Dimitrova , Bruno Da silva , Virginie Marchand , Caroline Jacquier
Nucleic Acids Research, 2020, 48 (4), pp.2050-2072. ⟨10.1093/nar/gkaa002⟩
Journal articles hal-03456640v1

Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response

Adeline Galvanin , Lea-Marie Vogt , Antonia Grober , Isabel Freund , Lilia Ayadi
Nucleic Acids Research, 2020, 48 (22), pp.12833-12844. ⟨10.1093/nar/gkaa1123⟩
Journal articles hal-03071703v1

Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2′-O-Methylations in RNA by RiboMethSeq

Florian Pichot , Virginie Marchand , Lilia Ayadi , Valerie Bourguignon-Igel , Mark Helm
Frontiers in Genetics, 2020, 11, pp.38. ⟨10.3389/fgene.2020.00038⟩
Journal articles hal-02498335v1
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Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes

Stephan Werner , Lukas Schmidt , Virginie Marchand , Thomas Kemmer , Christoph Falschlunger
Nucleic Acids Research, 2020, 48 (7), pp.3734 - 3746. ⟨10.1093/nar/gkaa113⟩
Journal articles hal-02492494v1

NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination

Stephan Werner , Aurellia Galliot , Florian Pichot , Thomas Kemmer , Virginie Marchand
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1173⟩
Journal articles hal-03093648v1
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Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

Virginie Marcel , Janice Kielbassa , Virginie Marchand , Kundhavai s Natchiar , Hermes Paraqindes
NAR Cancer, 2020, 2 (4), pp.1-12. ⟨10.1093/narcan/zcaa036⟩
Journal articles inserm-03103238v1

Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168

Valerie de Crecy-Lagard , Robert J. Ross , Marshall Jaroch , Virginie Marchand , Christina Eisenhart
Biomolecules, 2020, 10 (7), pp.977. ⟨10.3390/biom10070977⟩
Journal articles hal-02915956v1
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HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA

Virginie Marchand , Florian Pichot , Paul Neybecker , Lilia Ayadi , Valérie Bourguignon-Igel
Nucleic Acids Research, 2020, 48 (19), pp.e110. ⟨10.1093/nar/gkaa769⟩
Journal articles hal-02957799v1
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Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing

Charif Rashka , Sébastien Hergalant , Natacha Dreumont , Abderrahim Oussalah , Jean-Michel Camadro
Human Molecular Genetics, 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩
Journal articles hal-03100129v1
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2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations

Carole Trzaska , Séverine Amand , Christine Bailly , Catherine Leroy , Virginie Marchand
Nature Communications, 2020, 11 (1), pp.1509. ⟨10.1038/s41467-020-15140-z⟩
Journal articles hal-02515244v1

Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures

Lukas Schmidt , Stephan Werner , Thomas Kemmer , Stefan Niebler , Marco Kristen
Frontiers in Genetics, 2019, 10, pp.876. ⟨10.3389/fgene.2019.00876⟩
Journal articles hal-02317684v1
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FTSJ3 is an RNA 2′-O-methyltransferase recruited by HIV to avoid innate immune sensing

Mathieu Ringeard , Virginie Marchand , Etienne Decroly , Yuri Motorin , Yamina Bennasser
Nature, 2019, 565 (7740), pp.500-504. ⟨10.1038/s41586-018-0841-4⟩
Journal articles hal-01981983v1

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms

Isabel Freund , Daniel Buhl , Sébastien Boutin , Annika Kotter , Florian Pichot
RNA, 2019, 25 (7), pp.869-880. ⟨10.1261/rna.070243.118⟩
Journal articles hal-02113259v1

Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance

Jiajie Wei , Rigel Kishton , Matthew Angel , Crystal Conn , Nicole Dalla Venezia
Journal articles hal-02007743v1
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Diversity and heterogeneity of extracellular RNA in human plasma

Adeline Galvanin , Gabriel Dostert , Lilia Ayadi , Virginie Marchand , Emilie Velot
Biochimie, 2019, 164, pp.22-36. ⟨10.1016/j.biochi.2019.05.011⟩
Journal articles hal-02140106v1

Absolute quantification of noncoding RNA by microscale thermophoresis

Dominik Jacob , Kathrin Thüring , Aurellia Galliot , Virginie Marchand , Adeline Galvanin
Angewandte Chemie International Edition, 2019, 58 (28), pp.9565-9569. ⟨10.1002/anie.201814377⟩
Journal articles hal-02078064v1

A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure

Christina Dal Magro , Patrick Keller , Annika Kotter , Stephan Werner , Victor Duarte
Angewandte Chemie International Edition, 2018, 57 (26), pp.7893-7897. ⟨10.1002/anie.201713188⟩
Journal articles hal-01801500v1
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RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions

Lilia Ayadi , Adeline Galvanin , Florian Pichot , Virginie Marchand , Yuri Motorin
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2018, 1862 (3), pp.253-269. ⟨10.1016/j.bbagrm.2018.11.009⟩
Journal articles hal-01969343v1

Detection and Analysis of RNA Ribose 2′-O-Methylations: Challenges and Solutions

Yuri Motorin , Virginie Marchand
Genes, 2018, 9 (12), pp.642. ⟨10.3390/genes9120642⟩
Journal articles hal-01969342v1
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Double methylation of tRNA-U54 to 2′-O-methylthymidine (Tm) synergistically decreases immune response by Toll-like receptor 7

Patrick Keller , Isabel Freund , Virginie Marchand , Guillaume Bec , Raven Huang
Nucleic Acids Research, 2018, 46 (18), pp.9764-9775. ⟨10.1093/nar/gky644⟩
Journal articles hal-01864193v1

AlkAniline-Seq: Profiling of m 7 G and m 3 C RNA Modifications at Single Nucleotide Resolution

Virginie Marchand , Lilia Ayadi , Felix Ernst , Jasmin Hertler , Valerie Bourguignon-Igel
Angewandte Chemie International Edition, 2018, 57 (51), pp.16785-16790. ⟨10.1002/anie.201810946⟩
Journal articles hal-01928435v1
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A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients

Jean-Louis Guéant , Céline Chery , Abderrahim Oussalah , Javad Nadaf , David Coelho
Nature Communications, 2018, 9 (1), pp.67. ⟨10.1038/s41467-017-02306-5⟩
Journal articles hal-01801484v1

Engineering of a DNA Polymerase for Direct m 6 A Sequencing

Joos Aschenbrenner , Stephan Werner , Virginie Marchand , Martina Adam , Yuri Motorin
Angewandte Chemie International Edition, 2017, 57 (2), pp.417 - 421. ⟨10.1002/anie.201710209⟩
Journal articles hal-01801461v1
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High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol)

Virginie Marchand , Lilia Ayadi , Aseel El Hajj , Florence Blanloeil-Oillo , Mark Helm
Methods in Molecular Biology, 2017, 1562, pp.171-187. ⟨10.1007/978-1-4939-6807-7_12⟩
Journal articles hal-01799289v1

Quantification of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol).

Lilia Ayadi , Yuri Motorin , Virginie Marchand
Methods in Molecular Biology, 2017, pp.29-48. ⟨10.1007/978-1-4939-7213-5_2⟩
Journal articles hal-01661952v1
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Next‐Generation Sequencing‐Based RiboMethSeq Protocol for Analysis of tRNA 2′‐O‐Methylation

Virginie Marchand , Florian Pichot , Kathrin Thüring , Lilia Ayadi , Isabel Freund
Biomolecules, 2017, 7 (1), pp.13. ⟨10.3390/biom7010013⟩
Journal articles hal-01799272v1

Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes

Jenny Erales , Virginie Marchand , Baptiste Panthu , Sandra Gillot , Stéphane Belin
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (49), pp.12934-12939. ⟨10.1073/pnas.1707674114⟩
Journal articles hal-02191312v1
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Identification of sites of 2′-O-methylation vulnerability in human ribosomal RNAs by systematic mapping

Sunny Sharma , Virginie Marchand , Yuri Motorin , Denis Lafontaine
Scientific Reports, 2017, 7 (1), pp.11490. ⟨10.1038/s41598-017-09734-9⟩
Journal articles hal-01799319v1

Multiplexed targeted sequencing of recurrent fusion genes in acute leukaemia

P. Ruminy , V. Marchand , N Buchbinder , T Larson , B Joly
Leukemia, 2016, 30 (3), pp.757-760. ⟨10.1038/leu.2015.177⟩
Journal articles hal-02331597v1

High-throughput sequencing for 1-methyladenosine (m1A) mapping in RNA

Lyudmil Tserovski , Virginie Marchand , Ralf Hauenschild , Florence Blanloeil-Oillo , Mark Helm
Methods, 2016, 107, pp.110-121. ⟨10.1016/j.ymeth.2016.02.012⟩
Journal articles hal-01474109v1

Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA

Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin
Nucleic Acids Research, 2016, 44 (16), ⟨10.1093/nar/gkw547⟩
Journal articles hal-01452312v1

Quantification and quality control of a small non-coding RNA preparation.

V. Marchand , Christiane Branlant
Methods in Molecular Biology, 2015, pp.17-28. ⟨10.1007/978-1-4939-2547-6_3⟩
Journal articles hal-01866546v1

The EJC Binding and Dissociating Activity of PYM Is Regulated in Drosophila

Sanjay Ghosh , Ales Obrdlik , V. Marchand , Anne Ephrussi
PLoS Genetics, 2014, 10 (6), ⟨10.1371/journal.pgen.1004455⟩
Journal articles hal-01866561v1

An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes

V. Marchand , Imre Gaspar , Anne Ephrussi
Current Opinion in Cell Biology, 2012, 24 (2), pp.202 - 210. ⟨10.1016/⟩
Journal articles hal-01866924v1

Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA

Sanjay Ghosh , V. Marchand , Imre Gaspar , Anne Ephrussi
Nature Structural and Molecular Biology, 2012, 19 (4), pp.441 - 449. ⟨10.1038/nsmb.2257⟩
Journal articles hal-01866563v1

Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization

Shih-Jung Fan , V. Marchand , Anne Ephrussi
PLoS ONE, 2011, 6 (5), ⟨10.1371/journal.pone.0020612⟩
Journal articles hal-01866927v1

Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K.

V. Marchand , Maryline Santerre , Christelle Aigueperse , Laetitia Fouillen , Jean-Michel Saliou
RNA Biology, 2011, pp.325-42
Journal articles hal-01866938v1

Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein

Aileen Bar , Virginie Marchand , Georges Khoury , Natacha Dreumont , Annie Mougin
Nucleic Acids Research, 2011, 39 (8), pp.3388-3403. ⟨10.1093/nar/gkq1114⟩
Journal articles hal-02270591v1

Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action

Jamal Tazi , Nadia Bakkour , V. Marchand , Lilia Ayadi , Amina Aboufirassi
FEBS Journal, 2010, 277 (4), pp.867 - 876. ⟨10.1111/j.1742-4658.2009.07522.x⟩
Journal articles hal-01866941v1
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2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association

Sylvain Maenner , Magali Blaud , Laetitia Fouillen , Anne Savoye , Virginie Marchand
PLoS Biology, 2010, 8 (1), pp.e1000276. ⟨10.1371/journal.pbio.1000276⟩
Journal articles hal-01715217v1

Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation.

Florence Besse , Sonia López de Quinto , Virginie Marchand , Alvar Trucco , Anne Ephrussi
Genes and Development, 2009, 23 (2), pp.195-207. ⟨10.1101/gad.505709⟩
Journal articles hal-00437642v1

Role of RNA structure and protein factors in the control of HIV-1 splicing

Jean-Michel Saliou , Cyril Bourgeois , L. Ayadi-Ben Mena , Delphine Ropers , S. Jacquenet
Frontiers in Bioscience-Landmark, 2009, 14, pp.2714-2729
Journal articles hal-00793011v1

Early specific free radical-related cytotoxicity of gas phase cigarette smoke an its paradoxical temporary inhibition of tar. An EPR study with the spin trap DEPMPO .

M. Culcasi , A. Müller , A. Mercier , Clément J.-L. , O. Payet
Chemico-Biological Interactions, 2006, 164, pp.215-231
Journal articles hal-00145404v1

Loss of containment: experimental aerosol rain-out assessment

Jérôme Hocquet , J.C Adrian , M. Godeau , V. Marchand , Jean-Pierre Bigot
Journal of Hazardous Materials, 2002, 93 (1), pp.67-76. ⟨10.1016/S0304-3894(02)00039-0⟩
Journal articles emse-00506600v1

A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding.

V. Marchand , Agnès Méreau , Sandrine Jacquenet , Denise Thomas , Annie Mougin
Journal of Molecular Biology, 2002, pp.629-52. ⟨10.1016/S0022-2836(02)00967-1⟩
Journal articles hal-01866980v1

Epitranscriptomic mapping of rRNA methylation for the characterization of chondrogenic differentiation of synovial fluid MSCs

Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille
Congrès anniversaire du réseau cartilage de la Grande Région, Sep 2023, Sarrebruck, Germany
Conference papers hal-04231176v1

Contribution of epitranscriptomics in the characterization of chondrogenic differentiation of synovial fluid MSCs

Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille
Journée scientifique de l'ED BioSE 2023, May 2023, Vandoeuvre lès Nancy, France
Conference papers hal-04231079v1

Molecular dissection of lncRNA activities: ANRIL as Model System

Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant
Bermuda Principles: Impact on Splicing 3rd Annual Conference, Feb 2019, Southampton, Bermuda
Conference papers hal-02968414v1

Molecular dissection of lncRNA activities: ANRIL as Model System

Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant
11th sifrARN, Nov 2018, Vandoeuvre-les-Nancy, France
Conference papers hal-02968425v1

High-throughput profiling of tRNA 2'-O-methylation in Bacteria

Virginie Marchand , Alexander Dalpke , Mark Helm , Yuri Motorin
Conference Nucleic Acids and Immunity, Jun 2017, Brno, Czech Republic
Conference papers hal-02946396v1

High-throughput analysis and biomedical applications of extracellular RNAs

A. Galvanin , G. Dostert , V. Marchand , P. Menu , É. Velot
1er Congrès de la French Society of Extracellular Vesicles (FSEV), Nov 2017, Paris, France
Conference papers hal-03368989v1


P. Ruminy , F. Drieux , A. Abdel Sater , V. Fataccioli , V. Marchand
14th International Conference on Malignant Lymphoma, Jun 2017, Lugano, Switzerland. pp.74-75, ⟨10.1002/hon.2437_62⟩
Conference papers hal-02484212v1
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SpinalCOM: Ambulatory monitoring of the Spinal Cord

Olivier Tsiakaka , Mehdi Terosiet , Olivier Romain , H Benali , V Marchand
Colloque du GDR SoC-SiP, Jun 2016, Nantes, France
Conference papers hal-01337125v1

Valeur pronostique de la classification GCB/ABC déterminée par RT-MLPA associée à la TEP dans les lymphomes B diffus à grandes cellules

A. Labois , P. Ruminy , S. Becker , H. Lanic , S. Mareschal
Société Française d’Hématologie, Mar 2016, Paris, France
Conference papers hal-01658125v1

Comprehensive characterization of human extracellular RNAs (exRNAs) in plasma by high- throughput sequencing

Virginie Marchand , Emilie Velot , Yuri Motorin
GBM Meeting 2016 CONGRES RNA BIOCHEMIE A BONN, Oct 2016, Bonn, Germany
Conference papers hal-02946341v1

Non-coding RNAs and mRNA splicing events as biomarkers of diseases and cell control quality tools, application to heart failure prevention

Virginie Marchand , Valentin Vautrot , Gired Nicolas , Faiez Zannad , Patrick Rossignol
6th International Symposium Europe-China, Jul 2016, Nancy, France
Conference papers hal-02968456v1

High-throughput mapping of 2'-O-methylated residues in RNA by next- generation sequencing RNA modification; methylation; high-throughput sequencing; pathology

Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin
10th SifrARN Meeting 2016 SFBBM Toulouse, Mar 2016, Toulouse, France
Conference papers hal-02946334v1

Loss of containment: experimental aerosol rain-out assessment

J.C Adrian , R. Lerible , V. Marchand , Jérôme Hocquet , Jean-Pierre Bigot
10th International Symposium on Loss Prevention and Safety Promotion in the Process Industries, 2001, Stockholm, Sweden. ⟨10.1016/B978-044450699-3/50022-7⟩
Conference papers hal-01350641v1

Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq

Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin
Computational Epigenomics and Epitranscriptomics, 2624, Springer US, pp.207-223, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2962-8_14⟩
Book sections hal-03971146v1

Quantitative and Qualitative Assessment of Small RNA Preparations

Virginie Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Yuri Motorin
Small Non-Coding RNAs, 2300, pp.17-29, 2021, ⟨10.1007/978-1-0716-1386-3_3⟩
Book sections hal-03190561v1

AlkAniline-Seq: A Highly Sensitive and Specific Method for Simultaneous Mapping of 7-Methyl-guanosine (m7G) and 3-Methyl-cytosine (m3C) in RNAs by High-Throughput Sequencing

V. Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Methods Mol Biol, 2298, pp.77-95, 2021, ⟨10.1007/978-1-0716-1374-0_5⟩
Book sections hal-03266408v1

Mapping of 7-methylguanosine (m7G), 3-methylcytidine (m3C), dihydrouridine (D) and 5-hydroxycytidine (ho5C) RNA modifications by AlkAniline-Seq

Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin
Methods in Enzymology, pp.25-47, 2021, ⟨10.1016/bs.mie.2021.06.001⟩
Book sections hal-03344110v1

Isolation, Extraction and Deep-Sequencing Analysis of Extracellular RNAs (exRNAs) from Human Plasma

Virginie Marchand , Adeline Galvanin , Yuri Motorin
Small Non-Coding RNAs, pp.165-182, 2021, ⟨10.1007/978-1-0716-1386-3_15⟩
Book sections hal-03190554v1

Mapping and Quantification of tRNA 2′-O-Methylation by RiboMethSeq

Adeline Galvanin , Lilia Ayadi , Mark Helm , Yuri Motorin , Virginie Marchand
Methods Mol Biol, pp.273-295, 2019, ⟨10.1007/978-1-4939-8808-2_21⟩
Book sections hal-01957102v1

Study of RNA-Protein Interactions and RNA Structure in Ribonucleoprotein Particles (RNPs)

Virginie Marchand , Annie Mougin , Agnès Méreau , Isabelle Behm-Ansmant , Yuri Motorin
Roland K. Hartmann; Albrecht Bindereif; Astrid Schön; Eric Westhof. Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, Wiley-VCH Verlag GmbH & Co. KGaA, pp.975-1016, 2014, 9783527327645. ⟨10.1002/9783527647064.ch44⟩
Book sections hal-01957954v1

Study of RNA-protein interactions and RNA structure in ribonucleoprotein particles (RNP).

Virginie Marchand , Annie Mougin , Agnes Mereau , Christiane Branlant
Prof. Dr. Roland K. Hartmann; Prof. Dr. Albrecht Bindereif; Dr. Astrid Schön; Prof. Dr. Eric Westhof. Handbook on RNA biochemistry, Wiley, pp.172-204, 2005, 9783527308262. ⟨10.1002/9783527619504.ch11⟩
Book sections hal-02202223v1