Xiaoyi Chen

Identifiants chercheurs

IdHAL :

xiaoyi-chen

Publications

Pré-publication, Document de travail (1)

COBT: A gene-based rare variant burden test for case-only study designs using aggregated genotypes from public reference cohorts Antoine Favier,Stefania Chounta,Alejandro Garcia,Fabienne Jabot-Hanin,Xiaoyi Chenet al. 2025 Pré-publication, Document de travail hal-05368419v1

Article dans une revue (20)

An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse Xiaoyi Chen,Junyuan Wang,Carole Faviez,Xiaomeng Wang,Marc Vincentet al. Studies in Health Technology and Informatics, 2024, Studies in Health Technology and Informatics, 316, pp.1785-1789. ⟨10.3233/SHTI240777⟩ Article dans une revue hal-04726931v1
Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies Carole Faviez,Xiaoyi Chen,Nicolas Garcelon,Mohamad Zaidan,Katy Billotet al. BMC Medical Informatics and Decision Making, 2024, 24 (1), pp.134. ⟨10.1186/s12911-024-02538-8⟩ Article dans une revue hal-04685782v1
Performance and clinical utility of a new supervised machine-learning pipeline in detecting rare ciliopathy patients based on deep phenotyping from electronic health records and semantic similarity Carole Faviez,Marc Vincent,Nicolas Garcelon,Olivia Boyer,Bertrand Knebelmannet al. Orphanet Journal of Rare Diseases, 2024, 19 (1), pp.55. ⟨10.1186/s13023-024-03063-7⟩ Article dans une revue hal-04455861v1
The genetic landscape and clinical spectrum of nephronophthisis and related ciliopathies Friederike Petzold,Katy Billot,Xiaoyi Chen,Charline Henry,Emilie Filholet al. Kidney International, 2023, 104 (2), pp.378-387. ⟨10.1016/j.kint.2023.05.007⟩ Article dans une revue hal-04339478v1
Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives Xiaoyi Chen,Carole Faviez,Marc Vincent,Sophie Saunier,Nicolas Garcelonet al. Studies in Health Technology and Informatics, 2023, Studies in Health Technology and Informatics, ⟨10.3233/SHTI230342⟩ Article dans une revue hal-04339484v1
Assessment of the Early Detection of Anosmia and Ageusia Symptoms in COVID-19 on Twitter: Retrospective Study Carole Faviez,Manissa Talmatkadi,Pierre Foulquié,Adel Mebarki,Stéphane Schücket al. JMIR Infodemiology, 2023, 3, pp.e41863. ⟨10.2196/41863⟩ Article dans une revue hal-04227117v1
A Multi-Omics Common Data Model for Primary Immunodeficiencies Mélanie Buy,William Digan,Xiaoyi Chen,Julien Husson,Mickael Ménageret al. Studies in Health Technology and Informatics, 2022, Studies in Health Technology and Informatics, 290, pp.56-60. ⟨10.3233/SHTI220031⟩ Article dans une revue hal-04032071v1
Patient-Patient Similarity-Based Screening of a Clinical Data Warehouse to Support Ciliopathy Diagnosis Xiaoyi Chen,Carole Faviez,Marc Vincent,Luis Briseño-Roa,Hassan Faouret al. Frontiers in Pharmacology, 2022, 13, ⟨10.3389/fphar.2022.786710⟩ Article dans une revue hal-03629207v1
Differential association between inflammatory cytokines and multiorgan dysfunction in COVID-19 patients with obesity Marie-Agnès Dragon-Durey,Xiaoyi Chen,Amos Kirilovsky,Nadine Ben Hamouda,Carine El Sissyet al. PLoS ONE, 2021, 16 (5), pp.e0252026. ⟨10.1371/journal.pone.0252026⟩ Article dans une revue hal-03239731v1
L'équipe-projet HeKA Adrien Coulet,Stéphanie Allassonniere,François Angoulvant,Anita Burgun,Xiaoyi Chenet al. Bulletin de l'Association Française pour l'Intelligence Artificielle, 2021, 112, pp.29-32 Article dans une revue hal-03485904v1
Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France Carole Faviez,Pierre Foulquié,Xiaoyi Chen,Adel Mebarki,Sophie Quennelleet al. Studies in Health Technology and Informatics, 2021, ⟨10.3233/shti210308⟩ Article dans une revue hal-03253247v1
Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis Xiaoyi Chen,Carole Faviez,Marc Vincent,Nicolas Garcelon,Sophie Saunieret al. Studies in Health Technology and Informatics, 2021, ⟨10.3233/shti210241⟩ Article dans une revue hal-03253313v1
Concerns Discussed on Chinese and French Social Media During the COVID-19 Lockdown: Comparative Infodemiology Study Based on Topic Modeling Stéphane Schück,Pierre Foulquié,Adel Mebarki,Carole Faviez,Mickaïl Khadharet al. JMIR Formative Research, 2021, 5 (4), pp.e23593. ⟨10.2196/23593⟩ Article dans une revue hal-03253371v1
Analytical validation of the Immunoscore and its associated prognostic value in patients with colon cancer. Florence Marliot,Xiaoyi Chen,Amos Kirilovsky,Thomas Sbarrato,Carine El Sissyet al. Journal for Immunotherapy of Cancer, 2020, 8 (1), ⟨10.1136/jitc-2019-000272⟩ Article dans une revue hal-03023246v1
Diagnosis support systems for rare diseases: a scoping review Carole Faviez,Xiaoyi Chen,Nicolas Garcelon,Antoine Neuraz,Bertrand Knebelmannet al. Orphanet Journal of Rare Diseases, 2020, 15 (1), pp.94. ⟨10.1186/s13023-020-01374-z⟩ Article dans une revue hal-02570643v1
The Adverse Drug Reactions From Patient Reports in Social Media Project: Protocol for an Evaluation Against a Gold Standard Armelle Arnoux-Guenegou,Yannick Girardeau,Xiaoyi Chen,Myrtille Deldossi,Rim Aboukhamiset al. JMIR Research Protocols, 2019, 8 (5), pp.e11448. ⟨10.2196/11448⟩ Article dans une revue hal-03253382v1
Phenotypic similarity for rare disease: ciliopathy diagnoses and subtyping Xiaoyi Chen,Nicolas Garcelon,Antoine Neuraz,Katy Billot,Marc Lelargeet al. Journal of Biomedical Informatics, 2019, 100, pp.103308. ⟨10.1016/j.jbi.2019.103308⟩ Article dans une revue hal-02893160v1
Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate Xiaoyi Chen,Carole Faviez,Stéphane Schuck,Agnès Lillo-Le-Louët,Nathalie Texieret al. Frontiers in Pharmacology, 2018, 9, pp.541. ⟨10.3389/fphar.2018.00541⟩ Article dans une revue hal-02103689v1
Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods. Xiaoyi Chen,Myrtille Deldossi,Rim Aboukhamis,Carole Faviez,Badisse Dahamnaet al. Studies in Health Technology and Informatics, 2017, 245, pp.322-326. ⟨10.3233/978-1-61499-830-3-322⟩ Article dans une revue hal-03251581v1
Automated flow cytometric analysis across large numbers of samples and cell types. Xiaoyi Chen,Milena Hasan,Valentina Libri,Alejandra Urrutia,Benoît Beitzet al. Clinical Immunology, 2015, 157 (2), pp.249-60. ⟨10.1016/j.clim.2014.12.009⟩ Article dans une revue pasteur-01341702v1

Chapitre d'ouvrage (2)

Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome Carole Faviez,Marc Vincent,Nicolas Garcelon,Caroline Michot,Genevieve Baujatet al. Challenges of Trustable AI and Added-Value on Health, 294, IOS Press; IOS Press, pp.844-848, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220604⟩ Chapitre d'ouvrage hal-03790710v1
A Multi-Omics Common Data Model for Primary Immunodeficiencies Mélanie Buy,William Digan,Xiaoyi Chen,Julien Husson,Mickael Ménageret al. MEDINFO 2021: One World, One Health – Global Partnership for Digital Innovation, IOS Press, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220031⟩ Chapitre d'ouvrage hal-03880502v1

Thèse (1)

Automated flow cytometric analysis across a large number of samples Xiaoyi Chen Functional Analysis [math.FA]. Université de Cergy Pontoise, 2015. English. ⟨NNT : 2015CERG0777⟩ Thèse tel-01346602v1