Yann Audic

Publications

Article dans une revue (37)

Transcriptome Meta-Analysis Uncovers Cell-Specific Regulatory Relationships in Embryonic, Juvenile, Adult, and Aged Mouse Lens Epithelium and Fibers Matthieu Duot,Sarah Y. Coomson,Sanjaya K. Shrestha,M. V. Murali Krishna Nagulla,Yann Audicet al. Investigative Ophthalmology & Visual Science, 2025, 66 (4), pp.42-42. ⟨10.1167/iovs.66.4.42⟩ Article dans une revue hal-05063645v1
Insights into the Evolution and Regulation of Hybrid Internal-Terminal Exons from Tropomyosin Exon 9A in Xenopus laevis Agnès Méreau,Hubert Lerivray,Justine Viet,Serge Hardy,Luc Paillardet al. Biochimie, 2025, 238, part A, pp.29-42. ⟨10.1016/j.biochi.2025.07.009⟩ Article dans une revue hal-05235669v1
Fully in vitro iterative construction of a 24 kb-long artificial DNA sequence to store digital information Julien Leblanc,Olivier Boulle,Emeline Roux,Jacques Nicolas,Dominique Lavenieret al. Biotechniques, 2024, 76 (5), pp.203-215. ⟨10.2144/btn-2023-0109⟩ Article dans une revue hal-04567229v1
Neuroinflammation as a cause of differential Müller cell regenerative responses to retinal injury Diana García-García,Lorena Vidal-Gil,Karine Parain,Jingxian Lun,Yann Audicet al. Science Advances , 2024, 10 (40), eadp7916. ⟨10.1126/sciadv.adp7916⟩ Article dans une revue hal-04723396v1
Gene-gene functional relationships in Alzheimer’s disease: CELF1 regulates KLC1 alternative splicing Masataka Kikuchi,Justine Viet,Kenichi Nagata,Masahiro Sato,Geraldine Davidet al. Biochemical and Biophysical Research Communications, 2024, 721, pp.150025. ⟨10.1016/j.bbrc.2024.150025⟩ Article dans une revue hal-04567328v1
High-Throughput Transcriptomics of Celf1 Conditional Knockout Lens Identifies Downstream Networks Linked to Cataract Pathology Archana D. Siddam,Matthieu Duot,Sarah Y. Coomson,Deepti Anand,Sandeep Aryalet al. Cells, 2023, 12 (7), ⟨10.3390/cells12071070⟩ Article dans une revue hal-04093501v1
The RNA-binding proteins CELF1 and ELAVL1 cooperatively control the alternative splicing of CD44 Géraldine David,David Reboutier,Stéphane Deschamps,Agnès Méreau,William Tayloret al. Biochemical and Biophysical Research Communications, 2022, 626, pp.79-84. ⟨10.1016/j.bbrc.2022.07.073⟩ Article dans une revue hal-03757363v1
The Splicing Factor PTBP1 Represses TP63 γ Isoform Production in Squamous Cell Carcinoma William Taylor,Stéphane Deschamps,David Reboutier,Luc Paillard,Agnès Méreauet al. Cancer Research Communications, 2022, 2 (12), pp.1669-1683. ⟨10.1158/2767-9764.CRC-22-0350⟩ Article dans une revue hal-04100176v1
DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity Amandine Duchemin,Tina O’grady,Sarah Hanache,Agnès Méreau,Marc Thiryet al. Nature Communications, 2021, 12 (1), pp.6648. ⟨10.1038/s41467-021-26932-2⟩ Article dans une revue hal-03442150v1
Xenopus Resources Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support Marko Horb,Marcin Wlizia,Anita Abu-Daya,Sean Mcnamara,Dominika Gajdasiket al. Frontiers in Physiology, 2019, 10, pp.387. ⟨10.3389/fphys.2019.00387⟩ Article dans une revue hal-02156285v1
RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect Claire Domenger,Marine Allais,Virginie François,Adrien Leger,Emilie Lecomteet al. Molecular Therapy - Nucleic Acids, 2018, 10, pp.277 - 291. ⟨10.1016/j.omtn.2017.12.008⟩ Article dans une revue inserm-01734756v1
Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis Maud Noiret,Agnès Méreau,Gaelle Angrand,Marion Bervas,Carole Gautier-Courteilleet al. Developmental Biology, 2017, 426 (2), pp.449-459. ⟨10.1016/j.ydbio.2016.08.021⟩ Article dans une revue hal-01533247v1
Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells Olivier Le Tonquèze,Bernhard Gschloessl,Vincent Legagneux,Luc Paillard,Yann Audic Genomics Data, 2016, 8, pp.97-103. ⟨10.1016/j.gdata.2016.04.009⟩ Article dans une revue hal-01304359v1
Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways Maud Noiret,Stéphanie Mottier,Gaelle Angrand,Carole Gautier-Courteille,Hubert Lerivrayet al. Developmental Biology, 2016, 409 (2), pp.489-501. ⟨10.1016/j.ydbio.2015.11.002⟩ Article dans une revue hal-01225487v1
A post-transcriptional mechanism that controls ptbp1 abundance in the Xenopus epidermis. Agnès Méreau,Vincent Anquetil,Hubert Lerivray,Justine Viet,Claire Schirmeret al. Molecular and Cellular Biology, 2015, 35 (4), pp.758-68. ⟨10.1128/MCB.01040-14⟩ Article dans une revue hal-01117168v1
zfp36 expression delineates both myeloid cells and cells localized to the fusing neural folds in Xenopus tropicalis Maud Noiret,Serge Hardy,Yann Audic International Journal of Developmental Biology, 2014, 58 (10-12), pp.751--755. ⟨10.1387/ijdb.140264ya⟩ Article dans une revue hal-01313754v1
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Jérôme Saulière,Valentine Murigneux,Zhen Wang,Emélie Marquenet,Isabelle Barbosaet al. Nature Structural and Molecular Biology, 2012, 19 (11), pp.1124-31. ⟨10.1038/nsmb.2420⟩ Article dans une revue istex hal-00982626v1
Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis. Maud Noiret,Yann Audic,Serge Hardy International Journal of Developmental Biology, 2012, 56 (9), pp.747-53. ⟨10.1387/ijdb.120017sh⟩ Article dans une revue inserm-00870920v1
Inactivation of the Celf1 gene that encodes an RNA-binding protein delays the first wave of spermatogenesis in mice. Marie Cibois,Gaëlla Boulanger,Yann Audic,Luc Paillard,Carole Gautier-Courteille PLoS ONE, 2012, 7 (10), pp.e46337. ⟨10.1371/journal.pone.0046337⟩ Article dans une revue inserm-00869961v1
Chromosome wide analysis of CUGBP1 binding sites identifies the tetraspanin CD9 mRNA as a target for CUGBP1-mediated down-regulation. Olivier Le Tonquèze,Bernhard Gschloessl,Allen Namanda-Vanderbeken,Vincent Legagneux,Luc Paillardet al. Biochemical and Biophysical Research Communications, 2010, 394 (4), pp.884-9. ⟨10.1016/j.bbrc.2010.03.020⟩ Article dans une revue istex inserm-00466153v1
Reverse genetics in eukaryotes. Serge Hardy,Vincent Legagneux,Yann Audic,Luc Paillard Biology of the Cell, 2010, 102 (10), pp.561-80. ⟨10.1042/BC20100038⟩ Article dans une revue inserm-00511685v1
Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis. Antoine Graindorge,Olivier Le Tonquèze,Raphaël Thuret,Nicolas Pollet,Howard Beverley Osborneet al. Nucleic Acids Research, 2008, 36 (6), pp.1861-70. ⟨10.1093/nar/gkn031⟩ Article dans une revue hal-00277442v1
ElrA and AUF1 differentially bind cyclin B2 mRNA. Xun Guo,Francoise Gourronc,Yann Audic,Gillian Lyons-Levy,Therese Mitchellet al. Biochemical and Biophysical Research Communications, 2008, 377 (2), pp.653-7. ⟨10.1016/j.bbrc.2008.10.029⟩ Article dans une revue inserm-00353157v1
Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray. Antoine Graindorge,Raphaël Thuret,Nicolas Pollet,Howard Beverley Osborne,Yann Audic Nucleic Acids Research, 2006, 34 (3), pp.986-95. ⟨10.1093/nar/gkj492⟩ Article dans une revue hal-00289723v1
CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding Julien Marquis,Luc Paillard,Yann Audic,Bertrand Cosson,Olivier Danoset al. Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩ Article dans une revue hal-00478569v1
CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Julien Marquis,Luc Paillard,Yann Audic,Bertrand Cosson,Olivier Danoset al. Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩ Article dans une revue inserm-00292923v1
Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP. Howard Beverley Osborne,Carole Gautier-Courteille,Antoine Graindorge,Carine Barreau,Yann Audicet al. Biochemical Society Transactions, 2005, 33 (Pt 6), pp.1541-3. ⟨10.1042/BST20051541⟩ Article dans une revue inserm-00292938v1
EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation. Carole Gautier-Courteille,Christophe Le Clainche,Carine Barreau,Yann Audic,Antoine Graindorgeet al. Development (Cambridge, England), 2004, 131 (24), pp.6107-17. ⟨10.1242/dev.01528⟩ Article dans une revue inserm-00292940v1
Post-transcriptional regulation in cancer Yann Audic,Rebecca S Hartley Biology of the Cell, 2004, 96 (7), pp.479-498. ⟨10.1016/j.biolcel.2004.05.002⟩ Article dans une revue hal-02323363v1
An analysis of the sequence requirements of EDEN-BP for specific RNA binding. Sylvie Bonnet-Corven,Yann Audic,Francis Omilli,Howard Beverley Osborne Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩ Article dans une revue inserm-02325407v1
An analysis of the sequence requirements of EDEN-BP for specific RNA binding. Sylvie Bonnet-Corven,Yann Audic,Francis Omilli,Howard Beverley Osborne Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩ Article dans une revue inserm-00292945v1
Zygotic control of maternal cyclin A1 translation and mRNA stability Yann Audic,Mark Garbrecht,Brian Fritz,Michael Sheets,Rebecca S Hartley Developmental Dynamics, 2002, 225 (4), pp.511-521. ⟨10.1002/dvdy.10191⟩ Article dans une revue hal-02325355v1
Cyclin E morpholino delays embryogenesis in Xenopus. Yann Audic,B Boyle,M Slevin,Rebecca S Hartley Genesis - The Journal of Genetics and Development, 2001, 30 (3), pp.107-9 Article dans une revue hal-02325458v1
Zygotic Regulation of Maternal Cyclin A1 and B2 mRNAs Yann Audic,C. Anderson,R. Bhatty,Rebecca S Hartley Molecular and Cellular Biology, 2001, 21 (5), pp.1662-1671. ⟨10.1128/MCB.21.5.1662-1671.2001⟩ Article dans une revue hal-02325473v1
Embryo Deadenylation Element-Dependent Deadenylation Is Enhanced by a cis Element Containing AUU Repeats Yann Audic,Francis Omilli,H. Beverley Osborne Molecular and Cellular Biology, 1998, 18 (12), pp.6879-6884. ⟨10.1128/mcb.18.12.6879⟩ Article dans une revue hal-02325486v1
Postfertilization deadenylation of mRNAs in Xenopus laevis embryos is sufficient to cause their degradation at the blastula stage. Y. Audic,F. Omilli,H. B. Osborne Molecular and Cellular Biology, 1997, 17 (1), pp.209-18 Article dans une revue hal-00315978v1
Design and use of easily made RNA size markers. Yann Audic,Francis Omilli,Howard Beverley Osborne,Laetieia Landais Biotechniques, 1997, 23 (4), pp.612-4, 616 Article dans une revue hal-00293007v1

Communication dans un congrès (3)

Identification of alternative spliced RNA targets of the cataract-linked RNA-binding protein CELF1: use of an multi-omics approach based an iCLIP-seq and RNA-seq Matthieu Duot,Carole Gautier-Courteille,Yann Audic,Agnès Méreau,Archana Siddamet al. Annual Meeting of the Association-for-Research-in-Vision-and-Ophthalmology (ARVO) 2023, Apr 2023, New Orleans, United States. pp.1946 Communication dans un congrès hal-04286997v1
An integrative analysis using iCLIP-seq and RNA-Seq to identify genes post-transcriptionally regulated by the cataract-linked RNA-binding protein CELF1 in the lens Matthieu Duot,Yann Audic,Agnès Méreau,Archana Siddam,Deepti Anandet al. ARVO Annual Meeting 2022, May 2022, Denver, United States. pp.647 Communication dans un congrès hal-03798672v1
Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs Carmen Maria Livi,Luc Paillard,Enrico Blanzieri,Yann Audic 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, Mar 2012, Salamanca, Spain. pp.33-41, ⟨10.1007/978-3-642-28839-5_4⟩ Communication dans un congrès istex hal-01117163v1

Poster de conférence (1)

Storing the declaration of human rights on one data DNA molecule Gouenou Coatrieux,Chloé Berton,Elsa Dupraz,Belaid Hamoum,Thomas Derrienet al. CominLabs day 2022, Oct 2022, Rennes, France. pp.1-1 Poster de conférence hal-03817852v1

Pré-publication, Document de travail (4)

In vitro construction and long read sequencing analysis of a 24 kb long artificial DNA sequence encoding the Universal Declaration of the Rights of Man and of the Citizen Julien Leblanc,Olivier Boulle,Emeline Roux,Nicolas Jacques,Dominique Lavenieret al. 2023 Pré-publication, Document de travail hal-04357386v1
EXONIZATION BY THE EMERGENCE OF A CLEAVAGE-POLYADENYLATION SITE Agnès Méreau,Hubert Lerivray,Justine Viet,Serge Hardy,Luc Paillardet al. 2022 Pré-publication, Document de travail hal-03867257v1
THE SPLICING FACTOR PTBP1 REPRESSES TP63 γ ISOFORM PRODUCTION IN SQUAMOUS CELL CARCINOMA William Taylor,David Reboutier,Luc Paillard,Agnès Méreau,Yann Audic 2021 Pré-publication, Document de travail hal-03442152v1
The RNA-binding proteins CELF1 and ELAVL1 cooperatively control RNA isoform production Géraldine David,David Reboutier,Stéphane Deschamps,Agnès Méreau,William Tayloret al. 2020 Pré-publication, Document de travail hal-03085917v1