Alain Charcosset

287
Documents

Publications

Publications

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Evolution of population structure in a commercial European hybrid dent maize breeding program and consequences on genetic diversity

Romain Kadoumi , Nicolas Heslot , Fabienne Henriot , Alain Murigneux , Mathilde Berton et al.
TAG Theoretical and Applied Genetics, 2025, 138, ⟨10.1007/s00122-025-05008-5⟩
Article dans une revue hal-05331882 v1
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Phylogenetic relationships and genetic diversity of Tunisian maize landraces

Mohamed Dhia Eddine Hammami , Delphine Madur , Zayneb Kthiri , Agustin Galaretto , Stéphane D Nicolas et al.
PLoS ONE, 2025, 20 (1), pp.e0316185. ⟨10.1371/journal.pone.0316185⟩
Article dans une revue hal-05150986 v1
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metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stéphane Nicolas et al.
PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩
Article dans une revue hal-04994005 v1
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Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions

Baber Ali , Tristan Mary‐huard , Alain Charcosset , Laurence Moreau , Renaud Rincent
Plant Genome, 2025, 18 (1), ⟨10.1002/tpg2.20553⟩
Article dans une revue hal-05158192 v1
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Large-scale composite hypothesis testing procedure for omics data analyses

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard
NAR Genomics and Bioinformatics, 2025, 7 (3), ⟨10.1093/nargab/lqaf118⟩
Article dans une revue hal-05291677 v1
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Genomic prediction-aided incorporation of genetic resources into elite breeding: lessons from a collaborative multiparental design in flint maize

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland , Carine Palaffre et al.
TAG Theoretical and Applied Genetics, 2025, 138, pp.262. ⟨10.1007/s00122-025-05034-3⟩
Article dans une revue hal-05331884 v1
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Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression

Laurie C Maistriaux , Maxime J Laurent , Linda Jeanguenin , Santiago Alvarez Prado , Joseph Nader et al.
Plant Physiology, 2024, 196 (1), pp.368-384. ⟨10.1093/plphys/kiae326⟩
Article dans une revue hal-04639221 v1

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

Alizarine Lorenzi , Cyril Bauland , Sophie Pin , Delphine Madur , Valérie Combes et al.
TAG Theoretical and Applied Genetics, 2024, 137 (3), pp.75. ⟨10.1007/s00122-024-04566-4⟩
Article dans une revue hal-05292790 v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli et al.
Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩
Article dans une revue hal-04645117 v1

High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

Baber Ali , Bertrand Huguenin-Bizot , Maxime J Laurent , François Chaumont , Laurie Maistriaux et al.
TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩
Article dans une revue hal-04677733 v1
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize

Dimitri Sanchez , Antoine Allier , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland et al.
TAG Theoretical and Applied Genetics, 2024, 137 (1), pp.19. ⟨10.1007/s00122-023-04509-5⟩
Article dans une revue hal-04401428 v1
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels

Aurélien Beugnot , Tristan Mary-Huard , Cyril Bauland , Valerie Combes , Delphine Madur et al.
TAG Theoretical and Applied Genetics, 2023, 136, pp.219. ⟨10.1007/s00122-023-04431-w⟩
Article dans une revue hal-04295142 v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland et al.
Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩
Article dans une revue hal-04103846 v2
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Improving the use of plant genetic resources to sustain breeding programs’ efficiency

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Antoine Allier , Laurence Moreau et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205780119. ⟨10.1073/pnas.2205780119⟩
Article dans une revue hal-04215595 v1
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Detecting directional and non-directional epistasis in bi-parental populations using genomic data

Simon Rio , Alain Charcosset , Laurence Moreau , Tristan Mary-Huard
Genetics, 2023, 224 (3), pp.iyad089. ⟨10.1093/genetics/iyad089⟩
Article dans une revue hal-04215609 v1

Impact of interpopulation distance on dominance variance and average heterosis in hybrid populations within species

Andrés Legarra , David Omar Gonzalez-Dieguez , Alain Charcosset , Zulma G. Vitezica
Article dans une revue hal-04095875 v1
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Genetic diversity and selection signatures in a gene bank panel of maize inbred lines from Southeast Europe compared with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.
BMC Plant Biology, 2023, 23 (1), pp.315. ⟨10.1186/s12870-023-04336-2⟩
Article dans une revue hal-04189388 v1
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Genetic Variation for Cold Tolerance in Two Nested Association Mapping Populations

Pedro Revilla , Ana Butrón , Víctor Manuel Rodriguez , Renaud Rincent , Alain Charcosset et al.
Agronomy, 2023, 13 (1), pp.195. ⟨10.3390/agronomy13010195⟩
Article dans une revue hal-04160043 v1
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.
Genetics, 2022, 220 (4), pp.1-18. ⟨10.1093/genetics/iyac018⟩
Article dans une revue hal-03659124 v1
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Efficient ReML inference in variance component mixed models using a Min-Max algorithm

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard
PLoS Computational Biology, 2022, 18 (1), pp.e1009659. ⟨10.1371/journal.pcbi.1009659⟩
Article dans une revue hal-04068810 v1
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.
TAG Theoretical and Applied Genetics, 2022, 135 (9), pp.3143 - 3160. ⟨10.1007/s00122-022-04176-y⟩
Article dans une revue hal-04216367 v1
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Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions

Claude Welcker , Nadir Abusamra Spencer , Olivier Turc , Ítalo Stefanine Correia Granato , Romain Chapuis et al.
Nature Communications, 2022, 13, pp.3225. ⟨10.1038/s41467-022-30872-w⟩
Article dans une revue hal-03709268 v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stéphane D. Nicolas , Delphine Madur et al.
PLoS ONE, 2021, 16 (2), pp.e0238334. ⟨10.1371/journal.pone.0238334⟩
Article dans une revue hal-03210018 v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland et al.
Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩
Article dans une revue hal-03368756 v1

Genomic Prediction of Hybrid Crops Allows Disentangling Dominance and Epistasis

David González-Diéguez , Andres Legarra , Alain Charcosset , Laurence Moreau , Christina Lehermeier et al.
Article dans une revue hal-03154408 v1

Concevoir et évaluer les maïs du futur

Alain Charcosset , François Tardieu , Peter Rogowsky , Clémentine Vitte , Catherine Giauffret et al.
Perspectives Agricoles, 2020, 480
Article dans une revue hal-03374756 v1

Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs

A. Seye , C. Bauland , A. Charcosset , Laurence Moreau
TAG Theoretical and Applied Genetics, 2020, 133 (6), pp.1995-2010. ⟨10.1007/s00122-020-03573-5⟩
Article dans une revue hal-04458331 v1
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A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩
Article dans une revue hal-03009577 v1

Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Alain Charcosset , Laurence Moreau
TAG Theoretical and Applied Genetics, 2020, 133 (1), pp.201-215. ⟨10.1007/s00122-019-03451-9⟩
Article dans une revue hal-02958926 v1
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Optimized breeding strategies to harness genetic resources with different performance levels

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Laurence Moreau , Alain Charcosset
BMC Genomics, 2020, 21 (1), pp.349. ⟨10.1186/s12864-020-6756-0⟩
Article dans une revue hal-04328215 v1

Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize

Simon Rio , Laurence Moreau , Alain Charcosset , Tristan Mary-Huard
Genetics, 2020, 216 (1), pp.27-41. ⟨10.1534/genetics.120.303278⟩
Article dans une revue hal-02973043 v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.
PLoS Genetics, 2020, 16 (3), pp.e1008241. ⟨10.1371/journal.pgen.1008241⟩
Article dans une revue hal-02973032 v1
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Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection

Antoine Allier , Christina Lehermeier , Alain Charcosset , Laurence Moreau , Simon Teyssèdre
Frontiers in Genetics, 2019, 10, ⟨10.3389/fgene.2019.01006⟩
Article dans une revue hal-03111538 v1
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Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.
BMC Plant Biology, 2019, 19 (1), ⟨10.1186/s12870-019-1926-4⟩
Article dans une revue hal-02627073 v1

Genomic prediction of maize yield across European environmental conditions

Emilie Millet , Willem Kruijer , Aude Coupel-Ledru , Santiago Alvarez Prado , Llorenç Cabrera Bosquet et al.
Nature Genetics, 2019, 51 (6), pp.952-956. ⟨10.1038/s41588-019-0414-y⟩
Article dans une revue hal-02618545 v1

Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield

Adama I Seye , Cyril Bauland , Héloïse Giraud , Valérie Méchin , Matthieu Reymond et al.
TAG Theoretical and Applied Genetics, 2019, 132 (5), pp.1523-1542. ⟨10.1007/s00122-019-03296-2⟩
Article dans une revue hal-02617673 v1

Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a north european grain maize program

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Bruno Claustres , Stephane Maltese et al.
TAG Theoretical and Applied Genetics, 2019, 132 (5), pp.1321-1334. ⟨10.1007/s00122-019-03280-w⟩
Article dans une revue hal-02627525 v1

Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset
TAG Theoretical and Applied Genetics, 2019, 132 (1), pp.81-96. ⟨10.1007/s00122-018-3196-1⟩
Article dans une revue hal-02625890 v1
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Usefulness criterion and post-selection parental contributions in multi-parental crosses: Application to polygenic trait Introgression

Antoine Allier , Laurence Moreau , Alain Charcosset , Simon Teyssèdre , Christina Lehermeier
G3, 2019, 9 (5), pp.1469-1479. ⟨10.1534/g3.119.400129⟩
Article dans une revue hal-02620266 v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon et al.
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩
Article dans une revue hal-02625253 v1

Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs

Fabien Laporte , Alain Charcosset , Tristan Mary
Biometrics, 2017, ⟨10.1111/biom.12634⟩
Article dans une revue hal-01568867 v1
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Linkage analysis and association mapping QTL detection models for hybrids between multiparental populations from two heterotic groups: application to biomass production in maize (Zea mays L.).

Héloïse Giraud , Cyril Bauland , Matthieu Falque , Delphine Madur , Valerie Combes et al.
G3, 2017, 7 (11), pp.3649-3657. ⟨10.1534/g3.117.300121⟩
Article dans une revue hal-02617705 v1
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Genetic diversity and population structure of native maize populations in Latin America and the Caribbean

Claudia A. Bedoya , Susanne Dreisigacker , Sarah Hearne , Jorge Franco , Celine Mir et al.
PLoS ONE, 2017, 12 (4), pp.e0173488. ⟨10.1371/journal.pone.0173488⟩
Article dans une revue hal-01568886 v1
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

Jean-Tristan Brandenburg , Tristan Mary , Guillem Rigaill , Sarah J. Hearne , Hélène Corti et al.
PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩
Article dans une revue hal-01605143 v1

Reciprocal genetics: identifying QTL for general and specific combining abilities in hybrids between multiparental populations from two maize (Zea mays L.) heterotic groups

Héloïse Giraud , Cyril Bauland , Matthieu Falque , Delphine Madur , Valerie Combes et al.
Genetics, 2017, 207 (3), pp.1167-1180. ⟨10.1534/genetics.117.300305⟩
Article dans une revue hal-03818440 v1

Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits

Sophie Bouchet , Pascal Bertin , T Presterl , Philippe Jamin , Denis Coubriche et al.
Heredity, 2017, 118 (3), pp.249-259. ⟨10.1038/hdy.2016.88⟩
Article dans une revue hal-01481767 v1

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents

Amandine Lariepe , Laurence Moreau , J. Laborde , Cyril Bauland , S. Mezmouk et al.
TAG Theoretical and Applied Genetics, 2017, 130 (2), pp.403-417. ⟨10.1007/s00122-016-2822-z⟩
Article dans une revue hal-01481772 v1
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Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations

Renaud Rincent , Alain Charcosset , Laurence Moreau
TAG Theoretical and Applied Genetics, 2017, 130 (11), pp.1-17. ⟨10.1007/s00122-017-2956-7⟩
Article dans une revue hal-01583795 v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
TAG Theoretical and Applied Genetics, 2017, 130 (10), ⟨10.1007/s00122-017-2949-6⟩
Article dans une revue hal-01595534 v1
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Fortune telling: metabolic markers of plant performance

Olivier Fernandez , Maria Urrutia , Stéphane Bernillon , Catherine Giauffret , Francois F. Tardieu et al.
Metabolomics, 2016, 12 (10), ⟨10.1007/s11306-016-1099-1⟩
Article dans une revue hal-02637624 v1
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Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla , Victor Manuel Rodriguez , Amando Ordas , Renaud Rincent , Alain Charcosset et al.
BMC Plant Biology, 2016, 16, pp.1-10. ⟨10.1186/s12870-016-0816-2⟩
Article dans une revue hal-02638082 v1

Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios

Emilie Millet , Claude Welcker , Willem Kruijer , Sandra Negro , Aude Coupel-Ledru et al.
Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.00621⟩
Article dans une revue hal-01362496 v1

Study on essential derivation in maize: III. Selection and evaluation of a panel of single nucleotide polymorphism loci for use in European and North American germplasm

Yves Rousselle , Elizabeth Jones , Alain Charcosset , Philippe Moreau , Kelly Robbins et al.
Crop Science, 2015, 55 (3), pp.1170-1180. ⟨10.2135/cropsci2014.09.0627⟩
Article dans une revue hal-01536501 v1
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Cold Tolerance in Two Large Maize Inbred Panels Adapted to European Climates

Pedro Revilla , Victor Manuel Rodriguez , Amando Ordas , Renaud Rincent , Alain Charcosset et al.
Crop Science, 2014, 54 (5), pp.1981 - 1991. ⟨10.2135/cropsci2013.11.0733⟩
Article dans une revue hal-02640160 v1

Usefulness of Multiparental Populations of Maize (Zea mays L.) for Genome-Based Prediction

Christina Lehermeier , Nicole Kraemer , Eva Bauer , Cyril Bauland , Christian Camisan et al.
Genetics, 2014, 198 (1), pp.3 - 16 +. ⟨10.1534/genetics.114.161943⟩
Article dans une revue hal-02636667 v1

Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production

Renaud Rincent , Stephane S. Nicolas , Sophie Bouchet , T. Altmann , Dominique D. Brunel et al.
TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩
Article dans une revue hal-02637142 v1

Mesenchymal stem cell therapy induces glucocorticoid synthesis in colonic mucosa and suppresses radiation-activated T cells New insights into MSC immunomodulation

R. Bessout , A. Semont , C. Demarquay , A. Charcosset , M. Benderitter et al.
Mucosal Immunology, 2014, 7 (3), pp.656-669. ⟨10.1038/mi.2013.85⟩
Article dans une revue hal-02614050 v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger et al.
Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩
Article dans une revue hal-02634244 v1

Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize.

Héloïse Giraud , Christina Lehermeier , Eva Bauer , Matthieu M. Falque , Vincent Segura et al.
Genetics, 2014, 198 (4), pp.1717-1734. ⟨10.1534/genetics.114.169367⟩
Article dans une revue hal-02637060 v1
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Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Sophie Bouchet , Bertrand Servin , Pascal Bertin , Delphine D. Madur , Valerie V. Combes et al.
PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩
Article dans une revue hal-02652500 v1

Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism

Nicolas Bardol , M. Ventelon , Brigitte B. Mangin , Sylvain Jasson , V. Loywick et al.
TAG Theoretical and Applied Genetics, 2013, 126 (11), pp.2717 - 2736. ⟨10.1007/s00122-013-2167-9⟩
Article dans une revue istex hal-02642570 v1

OptiMAS: A Decision Support Tool for Marker-Assisted Assembly of Diverse Alleles

Fabio Valente , Franck Gauthier , Nicolas Bardol , Mathilde Blanc , Johann J. Joets et al.
Journal of Heredity, 2013, 104 (4), pp.586 - 590. ⟨10.1093/jhered/est020⟩
Article dans une revue hal-02646077 v1
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Intraspecific variation of recombination rate in maize

Eva Bauer , Matthieu M. Falque , Hildrun Walter , Cyril Bauland , Christian Camisan et al.
Genome Biology, 2013, 14 (9), ⟨10.1186/gb-2013-14-9-r103⟩
Article dans une revue hal-02649037 v1

Out of America: tracing the genetic footprints of the global diffusion of maize

Celine C. Mir , Tatiana Zerjal , Valerie V. Combes , Fabrice F. Dumas , Delphine D. Madur et al.
TAG Theoretical and Applied Genetics, 2013, 126 (11), pp.2671-2682. ⟨10.1007/s00122-013-2164-z⟩
Article dans une revue istex hal-01000872 v1

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)

Renaud Rincent , Denis Laloë , Stephane Nicolas , T. Altmann , Dominique Brunel et al.
Genetics, 2012, 192 (2), pp.715-728. ⟨10.1534/genetics.112.141473⟩
Article dans une revue hal-01019845 v1

Flowering Time in Maize: Linkage and Epistasis at a Major Effect Locus

Eléonore Durand , Sophie Bouchet , Pascal Bertin , Adrienne Ressayre , Philippe Jamin et al.
Genetics, 2012, 190 (4), pp.1547 - +. ⟨10.1534/genetics.111.136903⟩
Article dans une revue hal-02648939 v1

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

Marion Truntzler , N. Ranc , M. C. Sawkins , Stephane S. Nicolas , Doménica Manicacci et al.
TAG Theoretical and Applied Genetics, 2012, 125 (4), pp.731 - 747. ⟨10.1007/s00122-012-1866-y⟩
Article dans une revue istex hal-02643782 v1
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The genetic basis of heterosis: multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.)

Amandine Lariepe , Brigitte Mangin , Sylvain Jasson , Valerie Combes , Fabrice Dumas et al.
Genetics, 2012, 190 (2), pp.795-811. ⟨10.1534/genetics.111.133447⟩
Article dans une revue hal-00986094 v1

Maize genetic diversity and association mapping using transposable element insertion polymorphisms

Tatiana Zerjal , Agnes A. Rousselet , Corinne C. Mhiri , Valerie V. Combes , Delphine D. Madur et al.
TAG Theoretical and Applied Genetics, 2012, 124 (8), pp.1521-1537. ⟨10.1007/s00122-012-1807-9⟩
Article dans une revue istex hal-00999979 v1

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

Olivier Sosnowski , Alain A. Charcosset , Johann J. Joets
Bioinformatics, 2012, 28 (15), pp.2082 - 2083. ⟨10.1093/bioinformatics/bts313⟩
Article dans une revue hal-02646731 v1

A common genetic determinism for sensitivities to soil water deficit and evaporative demand: meta-analysis of quantitative trait loci and introgression lines of maize

Claude Welcker , Walid Sadok , Grégoire Dignat , Morgan Renault , Silvio Salvi et al.
Plant Physiology, 2011, 157 (2), pp.718-729. ⟨10.1104/pp.111.176479⟩
Article dans une revue hal-02651406 v1

Gene flow among different teosinte taxa and into the domesticated maize gene pool

Marilyn L. Warburton , Garrison Wilkes , S. Taba , Alain A. Charcosset , Celine Mir et al.
Genetic Resources and Crop Evolution, 2011, 58 (8), pp.1243 - 1261. ⟨10.1007/s10722-010-9658-1⟩
Article dans une revue istex hal-02650119 v1
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A large maize (Zea mays L.) SNP genotyping array : development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

Martin W. Ganal , Gregor Durstewitz , Andreas Polley , Aurélie A. Berard , Edward S. Buckler et al.
PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028334⟩
Article dans une revue hal-02652466 v1

A European perspective on maize history

Maud M. Tenaillon , Alain A. Charcosset
Comptes Rendus. Biologies, 2011, 334 (3), pp.221 - 228. ⟨10.1016/j.crvi.2010.12.015⟩
Article dans une revue hal-02647592 v1
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Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

Sofiane Mezmouk , Pierre Dubreuil , Mickael Bosio , Laurent Decousset , Alain A. Charcosset et al.
TAG Theoretical and Applied Genetics, 2011, 122, pp.1149-1160. ⟨10.1007/s00122-010-1519-y⟩
Article dans une revue hal-02648533 v1

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

Martin Ganal , Gregor Durstewitz , Andreas Polley , Aurélie Bérard , Edward Buckler et al.
PLoS ONE, 2011, 6 (12), pp.e28334. ⟨10.1371/journal.pone.0028334⟩
Article dans une revue hal-03818415 v1
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QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

Valérie Capelle , Carine C. Remoue , Laurence Moreau , Agnes Reyss , Aline Mahé et al.
BMC Plant Biology, 2010, 10 (2), pp.1-22. ⟨10.1186/1471-2229-10-2⟩
Article dans une revue hal-02662839 v1

The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations

Yung-Fen Huang , Delphine Madur , Valérie Combes , Chin-Long Ky , Denis Coubriche et al.
Genetics, 2010, 186 (1), pp.395-404. ⟨10.1534/genetics.110.113878⟩
Article dans une revue hal-02661097 v1
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Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds

Eléonore Durand , Maud Tenaillon , Celine Ridel , Denis Coubriche , Philippe Jamin et al.
BMC Evolutionary Biology, 2010, 10 (2), pp.1-21. ⟨10.1186/1471-2148-10-2⟩
Article dans une revue hal-02662644 v1
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Genetic variation for lignin content and cell wall digestibility in early maize lines derived from ancient landraces

Yves Y. Barrière , Alain A. Charcosset , Dominique Dénoue , Delphine D. Madur , Cyril Bauland et al.
Maydica, 2010, 55 (1), pp.65-74
Article dans une revue hal-02666723 v1

Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes

Marion Truntzler , Yves Y. Barrière , M.C. Sawkins , D. Lespinasse , J. Betran et al.
TAG Theoretical and Applied Genetics, 2010, 121 (8), pp.1465-1482. ⟨10.1007/s00122-010-1402-x⟩
Article dans une revue istex hal-02663445 v1

Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10

Sebastien Ducrocq , Catherine Giauffret , Delphine D. Madur , Valerie V. Combes , Fabrice F. Dumas et al.
Genetics, 2009, 183 (4), pp.1555-1563. ⟨10.1534/genetics.109.106922⟩
Article dans une revue hal-02667927 v1

Overview of QTL detection in plants and tests for synergistic epistatic interactions

Jean-Luc J.-L. Jannink , Laurence L. Moreau , Gilles Charmet , Alain A. Charcosset
Genetica, 2009, 136 (2), pp.225-236. ⟨10.1007/s10709-008-9306-2⟩
Article dans une revue istex hal-00964463 v1

Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene

Létizia Camus-Kulandaivelu , Jean-Baptiste Veyrieras , Delphine D. Madur , Valerie V. Combes , Marie Fourmann et al.
Genetics, 2006, 172 (4), pp.2449-2463. ⟨10.1534/genetics.105.048603⟩
Article dans une revue hal-02664567 v1

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

Antoine Martin , Judy Lee , Thomas Kichey , Denise Gerentes , Michel Zivy et al.
The Plant cell, 2006, 18 (11), pp.3252-74. ⟨10.1105/tpc.106.042689⟩
Article dans une revue hal-01927336 v1

The domestification of plants: from the gather to post-genomics

Joseph J. Jahier , Paul P. Chalhoub , Alain A. Charcosset
Biofutur, 2006, 266, pp.28-33
Article dans une revue hal-02656297 v1

Heterosis and combining ability for maize adaptation to tropical acid soils: implications for future breeding strategies

Claude Welcker , C. The , B. Andreau , C. de León , S.N. Parentoni et al.
Crop Science, 2005, 45, pp.2405-2413
Article dans une revue hal-02674447 v1

Linkage Mapping of 1454 New Maize Candidate Gene Loci

Matthieu Falque , Laurent Décousset , Delphine Dervins , Anne-Marie Jacob , Johann Joets et al.
Genetics, 2005, 170 (4), pp.1957-1966. ⟨10.1534/genetics.104.040204⟩
Article dans une revue hal-03818397 v1

BioMercator: integrating genetic maps and QTL towards discovery of candidate genes

A. Arcade , A. Labourdette , Matthieu Falque , Brigitte B. Mangin , Fabien F. Chardon et al.
Bioinformatics, 2005, 20 (14), pp.2324-2326. ⟨10.1093/bioinformatics/bth230⟩
Article dans une revue hal-02680717 v1
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European maize landraces : genetic diversity, core collection definition and methodology of use

Brigitte Gouesnard , Jacques Dallard , P. Bertin , Armand Boyat , A. Charcosset
Maydica, 2005, 50 (3/4), pp.225-234
Article dans une revue hal-02675620 v1

Experimental evaluation of several cycles of marker-assisted selection in maize

L. Moreau , Alain A. Charcosset , A. Gallais
Euphytica, 2004, 137 (1), pp.111-118
Article dans une revue hal-02669857 v1

Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome

Fabien F. Chardon , G. Virlon , L. Moreau , Matthieu Falque , Johann Joets et al.
Genetics, 2004, 168, pp.2169-2185. ⟨10.1534/genetics.104.032375⟩
Article dans une revue hal-02678548 v1

Use of molecular markers for the development of new cultivars and the evaluation of genetic diversity

Alain A. Charcosset , L. Moreau
Euphytica, 2004, 137 (1), pp.81-94
Article dans une revue hal-02669609 v1

Combining quantitative trait loci analysis and an ecophysiological model to analyse the genetic variability of the responses of maize leaf growth to temperature and water deficit

Matthieu Reymond , Bertrand Muller , Agnès Leonardi , Alain A. Charcosset , Francois F. Tardieu
Plant Physiology, 2003, 131, pp.664-675
Article dans une revue hal-02679444 v1

Maize introduction into Europe: the history reviewed in the light of molecular data

C. Rebourg , M. Chastanet , Brigitte Gouesnard , Claude Welcker , Pierre Dubreuil et al.
TAG Theoretical and Applied Genetics, 2003, 106, pp.895-903. ⟨10.1007/s00122-002-1140-9⟩
Article dans une revue istex hal-02678281 v1

Analysis of photoperiod sensitivity within a collection of tropical maize populations

Brigitte Gouesnard , C. Rebourg , Claude Welcker , Alain A. Charcosset
Genetic Resources and Crop Evolution, 2002, 49, pp.471-481
Article dans une revue hal-02669289 v1

RFLP diversity and relationships among traditional European maize populations

P. Gauthier , Brigitte Gouesnard , J. Dallard , R. Redaelli , C. Rebourg et al.
TAG Theoretical and Applied Genetics, 2002, 105, pp.91-99. ⟨10.1007/s00122-002-0903-7⟩
Article dans une revue istex hal-02675524 v1

Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines

Agnes Bouchez , Frederic F. Hospital , Mathilde M. Causse , A. Gallais , Alain A. Charcosset
Genetics, 2002, 162, pp.1945-1959
Article dans une revue hal-02670246 v1

Genetic analysis and QTL mapping of cell wall digestibility and lignification in silage maize

Valérie Méchin , O. Argillier , E. Guingo , L. Moreau , Alain A. Charcosset et al.
Crop Science, 2001, 41 (3), pp.690-697
Article dans une revue hal-02672001 v1

Etude de l'efficacité de la sélection assistée par marqueurs par rapport à la sélection classique

L. Moreau , Alain A. Charcosset , A. Gallais
Oléagineux, Corps Gras, Lipides, 2001, 8 (5), pp.496-501
Article dans une revue hal-02672153 v1

Large scale molecular analysis of traditional European maize populations. Relationships with morphological variation

C. Rebourg , Brigitte Gouesnard , Alain A. Charcosset
Heredity, 2001, 86, pp.574-587
Article dans une revue hal-02669618 v1

Interpretation of genotype X environment interactions for early maize hybrids over 12 years

C. Epinat-Le Signor , S. Dousse , Josiane Lorgeou , J.B. Denis , Raymond Bonhomme et al.
Crop Science, 2001, 41 (3), pp.663-669
Article dans une revue hal-02679147 v1
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Economic efficiency of one cycle of marker-assisted selection

L. Moreau , Stephane Lemarié , Alain A. Charcosset , A. Gallais
Crop Science, 2000, 40 (2), pp.329-337. ⟨10.2135/cropsci2000.402329x⟩
Article dans une revue hal-02687413 v1

Economic efficiency of one cycle of marker-assisted selection

L. Moreau , S. Lemarie , Alain A. Charcosset , A. Gallais
Crop Science, 1999, 2, pp.329-337
Article dans une revue hal-02693348 v1

Relationships among maize inbred lines and populations from European and North-American origins as estimated using RFLP markers

Pierre Dubreuil , Alain A. Charcosset
TAG Theoretical and Applied Genetics, 1999, 99, pp.473-480
Article dans une revue hal-02693895 v1

Evaluation of a DNA pooled-sampling strategy for estimating the RFLP diversity of maize populations

Pierre Dubreuil , C. Rebourg , Marielle Merlino , Alain A. Charcosset
Plant Molecular Biology Reporter, 1999, 17, pp.123-138
Article dans une revue hal-02691451 v1

Genetic diversity among maize populations: bulk RFLP analysis of 65 accessions

C. Rebourg , Pierre Dubreuil , Alain A. Charcosset
Maydica, 1999, 44, pp.237-249
Article dans une revue hal-02691452 v1

Apport des marqueurs moléculaires pour l'analyse et l'exploitation des ressources génétiques: exemple des populations de maïs

C. Rebourg , Alain A. Charcosset
Sélectionneur Français, 1999, 50, pp.21-32
Article dans une revue hal-02690906 v1

Marker-assisted selection with spatial analysis of unreplicated field trials

L. Moreau , Herve Monod , Alain A. Charcosset , A. Gallais
TAG Theoretical and Applied Genetics, 1999, 98, pp.234-242
Article dans une revue hal-02686218 v1
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First results from a pyramidal recurrent selection system for breeding maize silage

C. Epinat-Le Signor , Alain A. Charcosset , Yves Y. Barrière , Cyril Bauland , M. Derieux et al.
Agronomie, 1998, 18 (10), pp.649-657
Article dans une revue hal-02695294 v1
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Genetic analysis of root traits in maize

E. Guingo , Alain A. Charcosset
Agronomie, 1998, 18 (3), pp.225-235
Article dans une revue hal-02689474 v1

Genetic diversity within and among maize populations: a comparison between isozyme and nuclear RFLP loci

Pierre Dubreuil , Alain A. Charcosset
TAG Theoretical and Applied Genetics, 1998, 96, pp.577-587
Article dans une revue hal-02697447 v1
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First results from a pyramidal recurrent selection system for breeding maize silage

Christine Epinat-Le Signor , Alain Charcosset , Yves Barrière , Cyril Bauland , Maurice Derieux et al.
Agronomie, 1998, 18 (10), pp.649-657
Article dans une revue hal-00885865 v1

Marker-assisted selection efficiency in populations of finite size

L. Moreau , Alain A. Charcosset , Frederic F. Hospital , A. Gallais
Genetics, 1998, 148 (03), pp.1353-1365
Article dans une revue hal-02685315 v1

Prediction of maize hybrid silage performance using marker data : comparison of several models for specific combining ability

Alain A. Charcosset , B. Bonnisseau , O. Touchebeuf , Judith Burstin , Pierre Dubreuil et al.
Crop Science, 1998, 38 (1), pp.38-44
Article dans une revue hal-02686886 v1
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Genetic analysis of root traits in maize

Emmanuelle Guingo , Yannick Hébert , Alain Charcosset
Agronomie, 1998, 18 (3), pp.225-235
Article dans une revue hal-00885882 v1

Comparison of RFLP and morphological distances between maize Zea mays L. inbred lines. Consequences for germplasm protection purposes

C. Dillmann , A. Bar-Hen , D. Guerin , Alain A. Charcosset , Alain Murigneux
TAG Theoretical and Applied Genetics, 1997, 95, pp.92-102
Article dans une revue hal-02685480 v1

Relationship between phenotypic and marker distances: theoretical and experimental investigations

Judith Burstin , A. Charcosset
Heredity, 1997, 79 (5), pp.477-483
Article dans une revue hal-02688663 v1

More on the efficiency of marker-assisted selection

Frederic F. Hospital , L. Moreau , F. Lacoudre , Alain A. Charcosset , A. Gallais
TAG Theoretical and Applied Genetics, 1997, 95, 9 p
Article dans une revue hal-02688314 v1

Marker-assisted introgression of quantitative trait loci

Frederic F. Hospital , Alain A. Charcosset
Genetics, 1997, 147, pp.1469-1485
Article dans une revue hal-02685248 v1

Sampling problems with nested mating designs for estimating epistatic variance components in testcrosses of maize

Christine Epinat , Agnes Bouchez , Alain A. Charcosset , A. Gallais
Maydica, 1996, 41, pp.287-293
Article dans une revue hal-02686996 v1

A composite map of expressed sequences in maize

Mathilde M. Causse , Sylvain Santoni , C. Damerval , Aurélie Maurice , Alain A. Charcosset et al.
Genome, 1996, 39, pp.418-432
Article dans une revue hal-02685489 v1

Organization of RFLP diversity among inbred lines of maize representing the most significant heterotic groups

Pierre Dubreuil , P. Dufour , E. Krejci , Mathilde M. Causse , D. de Vienne et al.
Crop Science, 1996, 36 (3), pp.790-799
Article dans une revue hal-02687395 v1

Estimation of the contribution of quantitative trait loci (QTL) to the variance of a quantitative trait by means of genetic markers

Alain A. Charcosset , A. Gallais
TAG Theoretical and Applied Genetics, 1996, 93, pp.1193-1201
Article dans une revue hal-02684444 v1

L'identification de locus affectant des caractères quantitatifs (QTL) à l'aide de marqueurs génétiques est-elle justifiée pour la sélection ?

Alain A. Charcosset
Sélectionneur Français, 1996, 46, pp.35-45
Article dans une revue hal-02684493 v1

Molecular markers and protein quantities as genetic descriptors in maize. II. Prediction of performance of hybrids for forage traits

Judith Burstin , Alain A. Charcosset , Yves Y. Barrière , D. de Vienne , C. Darmerval
Plant Breeding, 1995, 114, pp.427-433
Article dans une revue hal-02702703 v1

Relationship between genetic markers and morphological traits in a maize inbred lines collection

A. Bar-Hen , Alain A. Charcosset , Mireille Bourgoin , J. Guiard
Euphytica, 1995, 84, pp.145-154
Article dans une revue hal-02710527 v1

Genetic dissection of the relationship between carbon metabolism and early growth in maize, with emphasis on key-enzyme loci

Mathilde M. Causse , J.P. Rocher , Amelia Henry , Alain A. Charcosset , J.L. Prioul et al.
Molecular Breeding, 1995, 1 (3), pp.259-272
Article dans une revue hal-02704624 v1

Utilisation des techniques de marquage génétique pour l'analyse de la variabilité génétique et la prédiction du phénomène d'hétérosis

Alain A. Charcosset , Pierre Dubreuil , L. Essioux , A. Gallais
Sélectionneur Français, 1994, 44, pp.3-13
Article dans une revue hal-02701953 v1
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Methodes mathematiques pour l'etude des genes controlant des caracteres quantitatifs

Bruno B. Goffinet , Jacques Beckmann , Didier Boichard , Mathilde M. Causse , Alain A. Charcosset et al.
Genetics Selection Evolution, 1994, 26 (suppl. 1), pp.9s-20s
Article dans une revue hal-02712662 v1
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Marquage et expression du genome chez le mais

Dominique de Vienne , J.M. Josse , Aurélie Maurice , Mathilde M. Causse , Agnès Leonardi et al.
Genetics Selection Evolution, 1994, 26 (suppl. 1), pp.21s-34s
Article dans une revue hal-02716205 v1

The effect of population structure on the relationship between heterosis and heterozygosity at marker loci

Alain A. Charcosset , L. Essioux
TAG Theoretical and Applied Genetics, 1994, 89 (2-3), pp.336-343
Article dans une revue hal-02701885 v1

A composite map of expressed sequences, based on four individual maps

Mathilde M. Causse , C. Damerval , Aurélie Maurice , Alain A. Charcosset , Sylvain Santoni et al.
Maize Genetics Cooperation Newsletter, 1994, 68, pp.42-44
Article dans une revue hal-02709431 v1

Investigation of the effect of genetic background on QTL expression using three connected RIL populations

Alain A. Charcosset , Mathilde M. Causse , A. Gallais
Maize Genetics Cooperation Newsletter, 1994, 68, pp.44
Article dans une revue hal-02703876 v1
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Modelling interaction from top-cross design data and prediction of F1 hybrid value

Alain A. Charcosset , J.B. Denis , M. Lefort-Buson , A. Gallais
Agronomie, 1993, 13 (7), pp.597-608
Article dans une revue hal-02705574 v1

Genetic variability among populations of maize germplasm. 2. Enzymatic polymorphism and its relationship to quantitative trait diversity

M. Lefort-Buson , Vincent Lavergne , J.J. Daudin , Alain A. Charcosset , J.P. Sampoux et al.
Maydica, 1991, 36 (3), pp.237-246
Article dans une revue hal-02708959 v1

Relationship between heterosis and heterozygosity at marker loci : a theoretical computation

Alain A. Charcosset , M. Lefort-Buson , A. Gallais
TAG Theoretical and Applied Genetics, 1991, 81, pp.571-575
Article dans une revue hal-02715163 v1

Genetic variability among populations of maize germplasm.1 : comparative analysis of top cross values and per se values of populations

Vincent Lavergne , M. Lefort-Buson , J.J. Daudin , Alain A. Charcosset , J.P. Sampoux et al.
Maydica, 1991, 36, pp.227-236
Article dans une revue hal-02709324 v1

De nouvelles perspectives pour l'analyse genetique des caracteres quantitatifs. 1 : a la recherche des locus importants

M. Lefort-Buson , F. Rodolphe , Alain A. Charcosset
Biofutur, 1990, 6, pp.30-37
Article dans une revue hal-02707596 v1

Use of top-cross designs for predicting performance of maize single cross hybrids

Alain A. Charcosset , M. Lefort-Buson , A. Gallais
Maydica, 1990, 35, pp.23-27
Article dans une revue hal-02703788 v1

De nouvelles perspectives pour l'analyse genetique des caracteres quantitatifs. 2 : la selection assistee par marqueurs

M. Lefort-Buson , F. Rodolphe , Alain A. Charcosset
Biofutur, 1990, 7-8, pp.42-47
Article dans une revue hal-02713223 v1

Charaterization of maize landraces to identify source of diversity

Stephane Nicolas , Sarah Ben-Sadoun , Mariangela Arca , Galaretto Agustin Oscar , Mary-Huard Tristan et al.
26. EUCARPIA Maize and Sorghum Conference, Silvio Salvi; Francesco Camerlengo; Elisabetta Frascaroli; Marco Maccaferri; Cristian Forestan; Roberto Tuberosa, Jun 2025, Bologna, Italy
Communication dans un congrès hal-05302662 v1

A Composite Hypothesis Testing Approach to Detect Pleiotropic Genomic Regions

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard
Eucarpia Biometrics in Plant Breeding 2025, Sep 2025, Edimbourg (GB), United Kingdom
Communication dans un congrès hal-05292851 v1

Complementing genomics with platform omics help decipher the genetic architecture of in-field productivity in the presence of genotype by Environment interactions.

Baber Ali , Stephane Nicolas , Melisande Blein-Nicolas , Tristan Mary-Huard , Alain Charcosset et al.
3rd GxExM Symposium, Oct 2024, Wageningen, Netherlands
Communication dans un congrès hal-05201495 v1

Exploring European maize genetic resources for adaptation using high-throughout genotyping, genomic prediction and landscape genomics

Galaretto Agustin Oscar , Carlotta Balconi , Rosa Ana Malvar , Rita Redaelli , Violeta Andjelkovic et al.
22. EUCARPIA General Congress, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Aug 2024, Leizpig, Germany
Communication dans un congrès hal-04807689 v1

Predicting seed composition and agronomic traits in maize genetic resources using phenomic selection based on near-infrared spectra

Stéphane D Nicolas , Sarah Ben-Sadoun , Renaud Rincent , Moreau Laurence , Alain Charcosset et al.
Joint PRO-GRACE/EMPHASIS policy symposium and workshop about plant genetic resources and phenotyping, Euroseeds, Jun 2024, Brussels, Belgium
Communication dans un congrès hal-04807968 v1

Proteomics-based systems approach of maize response to water deficit

Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas et al.
5. INPPO International Plant Proteomics Organization, May 2023, Thessaloniki, Greece
Communication dans un congrès hal-04302629 v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto et al.
Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France
Communication dans un congrès hal-04225361 v1

Genomic selection and Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stephane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Tristan Mary-Huard et al.
2. Colloque INRAE Genomics, INRAE Genomics, Nov 2023, Bordeaux, France
Communication dans un congrès hal-04808004 v1

Studying G×E to dissect plant responses to environmental changes: integration of methods and data

Emilie J Millet , Diana Pérez-Valencia , María Rodríguez-Álvarez , Martin Boer , Andreas Hund et al.
18. Eucarpia Biometrics in Plant Breeding Conference, Hans-Peter Piepho; Laurence Moreau; Tristan Mary-Huard, Sep 2022, Gif-sur-Yvette, France
Communication dans un congrès hal-04154352 v1

Développement d'une puce de génotypage haut débit des Insertions/Délétions chez le maïs : Application aux études d'associations pangénomiques

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Pirani et al.
Rencontre Science et Parteneriat Plant2Pro, Plant2Pro, Jun 2022, Paris, France
Communication dans un congrès hal-04807992 v1

Caractériser la diversité génétique et application à l’étude de caractères

Stephane Nicolas , Mariagela Arca , Yacine Diaw , Antoine Roux , Romane Guilbaud et al.
1. Carrefour de la sélection du Maïs, Pro Maïs; INRAE, Nov 2022, Montpellier, France
Communication dans un congrès hal-04808039 v1

Improving genomic predictions with inbreeding and non-additive effects in two admixed maize hybrid populations in single and multi-environment contexts

Laurence Moreau , Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Alain Charcosset et al.
XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia
Communication dans un congrès hal-04458027 v1

Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Piranni et al.
XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding, May 2022, Belgrade, Serbia
Communication dans un congrès hal-04225603 v1
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Integrated acclimation responses of maize root hydraulic architecture to water deficit

Protto Virginia , Bauget Fabrice , Rishmawi Louai , Tournaire-Roux Colette , Boursiac Yann et al.
EMBO Workshop - Molecular responses of plants facing climate change, Jun 2022, Montpellier, France
Communication dans un congrès hal-04010083 v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro et al.
Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France
Communication dans un congrès hal-03879809 v1

Advances in maize genetic resources characterisation and use

Antoine Allier , Simon Rio , Mariangela Arca , Laurence Moreau , Simon Teyssèdre et al.
Frontiers of Science and Technology in Crop Breeding and Production, MRIZP, Jun 2021, Belgrade, Serbia
Communication dans un congrès hal-04463167 v1

A systems approach of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.
AMAIZING Final Conference, Sep 2021, Online, France
Communication dans un congrès hal-03879824 v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker et al.
Journée SPS-CLAND, Sep 2021, Online, France
Communication dans un congrès hal-03879816 v1

Des modèles pour répondre à quels besoins de R&D ? Les besoins du généticien

Jacques Le Gouis , Renaud Rincent , Alain Charcosset
Animation scientifique GIS-BV : Modèle de culture et autres modèles prédictifs pour la R&D en biologie végétale, Jun 2020, Paris, France
Communication dans un congrès hal-02917480 v1

Levier génétique et stress abiotiques : principaux acquis et perspectives des projets nationaux BreedWheat (blé) et Amaizing (maïs)

Jacques Le Gouis , Alain Charcosset
Phloème 2020 : biennales de l’innovation céréalière, Arvalis - Institut du Végétal, Jan 2020, Paris, France
Communication dans un congrès hal-02917466 v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom
Communication dans un congrès hal-03879843 v1

Contribution des Insertion/Délétions à la variations des caractères, l’adaptation et aux performances hybrides au moyen d’une puce de génotypage haut débit

Clément Mabire , Jorge Duarte , Johann Joets , Julie B Fiévet , Romane Guilbaud et al.
Colloque GIS-BV, Jul 2019, Paris, France
Communication dans un congrès hal-02787704 v1

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stephane S. Nicolas , Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.
European maize meeting, May 2019, Montpellier, France
Communication dans un congrès hal-02788231 v1

Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stéphane Nicolas , Sandra Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.
24. Eucarpia Maize and Sorghum Conference, Oct 2019, Freising, Germany
Communication dans un congrès hal-03368737 v1

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.
Journée SFEAP-SFSM, Apr 2019, Paris, France
Communication dans un congrès hal-03879865 v1

Genomic prediction in early stages of a maize breeding program: comparison of testcross and factorial design

Laurence Moreau , Adama Innocent Seye , Héloïse Giraud , Alizarine Lorenzi , Cyril Bauland et al.
XXIVth Eucarpia Maize and Sorghum conference, TUM, Oct 2019, Freising, Germany
Communication dans un congrès hal-04458192 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France
Communication dans un congrès hal-03368726 v1

Systems genetics of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Symposium GisBV, Oct 2019, Paris, France
Communication dans un congrès hal-03879857 v1
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Dissecting G×E and QTL×E of maize yield in contrasting scenarios of light, heat and water deficit

Emilie J. Millet , Willem Kruijer , Santiago Alvarez Prado , Llorenç Cabrera-Bosquet , Aude Coupel-Ledru et al.
24. Eucarpia Maize and Sorghum Conference, TUM School of Life Sciences Weihenstephan, Oct 2019, Freising, Germany
Communication dans un congrès hal-04154261 v1

Deciphering the interest of integrating PAV genomic information in genetic analysis by investigating the extent of linkage disequilibrium

Clément Mabire , Jorge Duarte , Delphine Madur , Valerie Combes , Johann Joets et al.
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jun 2018, Rennes, France
Communication dans un congrès hal-02786354 v1
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Regulation of aquaporin expression in maize: proximal and distal eQTLs

Laurie C Maistriaux , Linda Jeanguenin , Santiago Alvarez Prado , Stephane S. Nicolas , Claude Welcker et al.
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France
Communication dans un congrès hal-02737313 v1

Revisiting hybrid breeding designs using genomic predictions calibrated on factorials between segregating families: a simulation study

Adama Innocent Seye , Cyril Bauland , Alain Charcosset , Laurence Moreau
XVII Eucarpia biometrics in plant breeding, Sep 2018, Ghent, Belgium
Communication dans un congrès hal-04458147 v1

Twenty years of divergent selection for flowering time from maize inbred lines

Christine Dillmann , Adrienne Ressayre , Elodie Marchadier , Alain Charcosset , Inoussa Sanané et al.
60th Annual Maize Genetics Conference, MaizeGDB.org, Mar 2018, Saint Malo (FR), France
Communication dans un congrès hal-04458116 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany
Communication dans un congrès hal-02785295 v1

Heterosis in maize : intermated recombinant inbred lines and their immortalized F2 reveal QTLs with dominant effects but no overdominance

Julie Fievet , Sarah Ben Sadoun , Tristan Mary , Stephane Nicolas , Matthieu Falque et al.
59. Maize Genetics Conference, Mar 2017, Saint-Louis, United States
Communication dans un congrès hal-01569899 v1

GWAS for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker et al.
Journées du Protéome Vert, Mar 2017, Paris, France
Communication dans un congrès hal-03879954 v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier et al.
1. German-French Maize Breeders School, May 2017, Hohenheim, Germany
Communication dans un congrès hal-02786301 v1

Genome-wide association study between 60 000 Present/Absent Variants and 29 agronomic traits using a new high throughput genotyping array

Clément Mabire , Jorge Duarte , Jean-Philippe Pichon , Johann Joets , Aude Darracq et al.
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jul 2016, Paris, France
Communication dans un congrès hal-02795575 v1

Optimization of the calibration set in genomic selection

Renaud Rincent , Alain Charcosset , Laurence Moreau
IUFRO international Conference Genomics and forest tree Genetics, May 2016, Arcachon, France
Communication dans un congrès hal-03332466 v1

Association mapping for transition to autotrophic growth under chilling conditions in maize

Christophe Clipet , J.F. Hû , Renaud Rincent , Sandrine Negro , Stephane Nicolas et al.
Eucarpia 2016. Plant Breeding: the Art of Bringing Science to Life, Aug 2016, Zürich, Switzerland
Communication dans un congrès hal-01603576 v1

A new algorithm for GWAS panel optimization, applications in plant genetics

Tristan Mary-Huard , Renaud Rincent , Alain Charcosset , Laurence Moreau
XXVIII. International Biometric Conference (IBC 2016), Dec 2017, Victoria, Canada
Communication dans un congrès hal-02739985 v1

Ongoing activities within the project DIVERZEATY - Genetic diversity of Serbian maize local landraces and inbred lines

Sanja Mikić , Brigitte Gouesnard , Violeta Andelkovic , Stanisavljević Dušan , Anne Zanetto et al.
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France
Communication dans un congrès hal-02739392 v1
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Genetic variability of the sensitivity of grain number to drought and high temperature in maize

Emilie Millet , Sandra Silvia Negro , Willem Kruijer , Stephane S. Nicolas , Fred van Eeuwijk et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France
Communication dans un congrès hal-02740735 v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland et al.
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France
Communication dans un congrès hal-02799117 v1

Effect of structuration and relatedness on power in Genome Wide Association Studies

Renaud Rincent , Laurence Moreau , Tristan Mary-Huard , Alain Charcosset
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Jun 2015, Montpellier, France
Communication dans un congrès hal-02795514 v1
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Relatedness distribution estimation between individuals in multi-population panels

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard
43rd European Mathematical Genetics Meeting (EMGM), Apr 2015, Brest, France. pp.1
Communication dans un congrès hal-01197652 v1

BioMercator 4 : A complete framework to integrate QTL, meta-QTL, and genome annotation.

Yannick de Oliveira , Olivier Sosnowski , Alain Charcosset , Johann Joets
European Conference on Computational Biology 2014, Sep 2014, Strasbourg, France
Communication dans un congrès hal-02417526 v1

Genetic architecture of European maize: multiparental QTL mapping and insights into heterosis

Amandine Lariepe , Laurence Moreau , Julie Fievet , Brigitte Mangin , Sylvain Jasson et al.
54. Maize Genetics Conference, Mar 2012, Portland, United States
Communication dans un congrès hal-01569900 v1

Genetic architecture of European maize: multiparental QTL mapping and insights into heterosis

Amandine Lariepe , Laurence Moreau , Julie Fievet , Brigitte Mangin , Sylvain Jasson et al.
Meeting of working Group Medicago sativa, Jan 2012, San Diego, United States
Communication dans un congrès hal-01569916 v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.
Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France
Communication dans un congrès hal-01268379 v1

Overview of QTL detection in plants and tests for synergistic epistatic interactions

Jean-Luc J.-L. Jannink , Laurence L. Moreau , Gilles Charmet , Alain A. Charcosset
3. International Conference of Quantitative Genetics, Aug 2007, Hangzhou, China
Communication dans un congrès hal-00964414 v1
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Etude de la diversité génétique du maïs en Europe : analyse d'ADN ancien à partir d'échantillons d'herbier et confrontation avec l'analyse moléculaire à grande échelle de collections de populations

Brigitte Gouesnard , Monique Chastanet , Christine Tollon-Cordet , Pierre Dubreuil , Armand Boyat et al.
Un dialogue pour la diversité génétique, 2004, Lyon, France. pp.345-356
Communication dans un congrès halshs-00566286 v1

Heterosis in maize investigated using connected RIL populations

Alain A. Charcosset , Brigitte B. Mangin , L. Moreau , L. Combes , M.F. Jourjon et al.
11. Meeting of the Eucarpia section biometrics in plant breeding, Aug 2000, Paris, France
Communication dans un congrès hal-02762934 v1

Comparison of sever al approaches for predicting maize hybrid performance using marker data

J.B. Denis , Alain A. Charcosset , B. Bonnisseau , O. Touchebeuf , Judith Burstin et al.
10. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, May 1997, Poznan, Poland
Communication dans un congrès hal-02771638 v1

Au delà des QTLs : deux approches d'utilisation des marqueurs en sélection

Alain A. Charcosset , Frederic F. Hospital , L. Moreau , Agnes Bouchez , Aurélie Maurice et al.
Séminaire du groupe de travail "Génomes végétaux", Apr 1997, Méribel-les-Allues, France
Communication dans un congrès hal-02765840 v1

Best linear unbiased estimator of the molecular genetic distance between inbred lines

C. Dillmann , Alain A. Charcosset , Bruno Goffinet , J.S.C. Smith
10. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, May 1997, Poznan, Poland
Communication dans un congrès hal-02765804 v1

Construction de génotypes assistée par marqueurs chez le maïs. Poster

A. Gallais , Aurélie Maurice , Agnes Bouchez , Alain A. Charcosset , Mathilde M. Causse et al.
Séminaire, Oct 1996, Toulouse, France
Communication dans un congrès hal-02765460 v1

Bases génétiques et physiologiques de l'efficacité d'utilisation de la fumure azotée chez le maïs

P. Bertin , Alain A. Charcosset , A. Gallais
Colloque AGPM, 1996, France
Communication dans un congrès hal-02764620 v1

Relationship between molecular and morphological distances in a maize inbred lines collection. Application for breeders'rights protection

A. Bar-Hen , Alain A. Charcosset
9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands
Communication dans un congrès hal-02773330 v1

Investigation into the effect of genetic background on QTL expression using three connected maize recombinant inbred lines (RIL) populations

Alain A. Charcosset , Mathilde M. Causse , L. Moreau , A. Gallais
9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands
Communication dans un congrès hal-02773329 v1
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Methodes mathematiques pour l'etude des genes controlant des caracteres quantitatifs

Bruno B. Goffinet , Jacques Beckmann , Didier Boichard , Mathilde M. Causse , Alain A. Charcosset et al.
Colloque BRG/INRA. Ressources génétiques animales et végétales. Méthodologies d'étude et de gestion, Sep 1993, Montpellier, France
Communication dans un congrès hal-02848407 v1
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Marquage et expression du genome chez le mais

Dominique de Vienne , J.M. Josse , Aurélie Maurice , Mathilde M. Causse , Agnès Leonardi et al.
Colloque BRG/INRA. Ressources génétiques animales et végétales. Méthodologie d'étude et de gestion, Sep 1993, Montpellier, France
Communication dans un congrès hal-02852369 v1

Relationship between molecular and morphological distances in a maize inbred lines collection. Application for breeders'rights protection

A. Bar-Hen , Alain A. Charcosset
9. Meeting of the EUCARPIA, Jul 1994, Wageningen, Netherlands
Communication dans un congrès hal-02773378 v1

Structuration of genetic variability revealed by RFLPs among a set of inbred lines of maize (Zea mays L.) including the most important heterotic groups for modern hybrid maize seed industry

Pierre Dubreuil , P. Dufour , E. Krejci , Mathilde M. Causse , Sylvain Santoni et al.
Genetic resources section meeting of Eucarpia, Mar 1994, Clermont-Ferrand, France
Communication dans un congrès hal-02775312 v1

Utilisation des techniques de marquage génétique pour l'analyse de la variabilité génétique et la prédiction du phénomène d'hétérosis

Alain A. Charcosset , Pierre Dubreuil , L. Essioux , A. Gallais
Journée ASF (Association des sélectionneurs français), Feb 1992, France
Communication dans un congrès hal-02846126 v1

Efficiency of marker-assisted selection

A. Gallais , Alain A. Charcosset
9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands
Communication dans un congrès hal-02773324 v1

Influence du fond génétique sur l'expression de QTLs de précocité chez le maïs

Alain A. Charcosset , Mathilde M. Causse , Sylvain Santoni
Réunion du groupe de travail marqueurs moléculaires chez les végétaux, Mar 1993, Meribel, France
Communication dans un congrès hal-02773596 v1

Un exemple de gestion des ressources genetiques en vue de la selection

A. Gallais , Henri Duval , Pauline Garnier‐géré , Alain A. Charcosset
Colloque international en hommage a Jean Pernes, Jan 1992, Paris, France
Communication dans un congrès hal-02774046 v1

Prediction of heterosis

Alain A. Charcosset
13. EUCARPIA Congress, Jul 1992, Angers, France
Communication dans un congrès hal-02775556 v1

Place des marqueurs dans une strategie de prediction de la valeur d'hybrides F1

Alain A. Charcosset
Meribel 91. Seminaire du Departement de Genetique et d'Amelioration des Plantes, Mar 1991, Meribel, France
Communication dans un congrès hal-02773305 v1

Marquage moleculaire et amelioration des plantes

Alain A. Charcosset
Seminaire international INRA-ICARDA, Nov 1991, Montpellier, France
Communication dans un congrès hal-02772682 v1

Synthese

Alain A. Charcosset , Jean Michel J. M. Elsen , Brigitte B. Mangin
Meribel 91. Seminaire du Departement de Genetique et d'Amelioration des Plantes, Mar 1991, Meribel, France
Communication dans un congrès hal-02773436 v1

Performance prediction of maize single cross hybrids

Alain A. Charcosset , J.B. Denis , M. Lefort-Buson
15. Conference, Jun 1990, Budapest, Hungary
Communication dans un congrès hal-02778025 v1

Prediction de l'heterosis a partir de plans de croisements top-cros : interet de la distance de Hanson et Casas

Alain A. Charcosset , M. Lefort-Buson , A. Gallais
Meribel 88, Mar 1988, Meribel, France
Communication dans un congrès hal-02783020 v1
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Mining Allelic diversity of maize landraces for abiotic and biotic stresses

Nicolas Stéphane D. , Balconi Carlotta , Ana Ana Butron , Chaumont François , Gouesnard Brigitte et al.
26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy
Poster de conférence hal-05302651 v1
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ÉVALUATION DU COMPORTEMENT DE 50 POPULATIONS FERMIÈRES DE MAIS RICHES EN PROTÉINES EN CONDITIONS D’AGRICULTURE BIOLOGIQUE DANS LE NORD FINISTÈRE (Projet ABIM)

Jean-Eric Chauvin , Nathalie Moutier , Dominique Kermarrec , Bernard Gesret , Cyril Bauland et al.
1. Journée de la Recherche Bio Bretonne, Nov 2025, Loudéac, France. ⟨10.18167/infrastructure/00007⟩
Poster de conférence hal-05337456 v1
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Reintroducing French High-Protein Landrace Maize Populations to Support Autonomy in Brittany's Pig Farming Sector

Cyril Bauland , Bernard Gesret , Dominique Kermarrec , Alain Charcosset , Brigitte Gouesnard et al.
Scientific Conference on Breeding to meet environmental and societal challenges, May 2025, Coimbra (PT), Portugal. , EUCARPIA Scientific Conference on Breeding to meet environmental and societal challenges, May 26-29, 2025, Abstract e-Book, pp.94, 2025
Poster de conférence hal-05090453 v1
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Predicting adaptation of maize landraces from genebanks by combining DNA-pool genotyping, genomic prediction and genomic offset

Oscar Galaretto Agustin , Ana Malvar Rosa , Brigitte Gouesnard , Carlotta Balconi , Delphine Madur, et al.
26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy
Poster de conférence hal-05302702 v1
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Genomic predictions and Genome-wide association studies on DNA pools to characterize traditional maize landraces and identify genomic regions associated with agronomic traits and environmental adaptation

Sarah Ben-Sadoun , Agustin Oscar Galaretto , Antoine Roux , Brigitte Gouesnard , Alain Charcosset et al.
7. International Conference of Quantitative Genetics (ICQG7), Jul 2024, Vienna, Austria.
Poster de conférence hal-04807728 v1

Natural variation in maize root hydraulic architecture may offer new insights into plant drought responses

Oh Jeonghwa , Louai Rishmawi , Tournaire-Roux Colette , Cyril Bauland , Laura Gallo et al.
66. Annual Maize Genetics Meeting, Feb 2024, Raleigh, United States.
Poster de conférence hal-04519703 v1
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A combination of quantitative trait locus mapping and transcriptome analysis reveals a cluster of three MYC2-and jasmonic acid-dependent genes associated with long-term chilling tolerance in maize

Catalina Duran Garzon , Claire Chemin , Andrea Rau , Benoît Decaux , Hélène Sellier-Richard et al.
65th Annual Maize Genetics Meeting, Mar 2023, Saint-Louis (Missouri), United States. , 2023
Poster de conférence hal-05161618 v1

Genomic prediction and landscape genomics in a large maize landraces collection using high-throughput pool genotyping identifies promising sources of diversity for prebreeding

Agustin O. Galaretto , Brigitte Gouesnard , Delphine Madur , Sarah Ben-Sadoun , Sarah Hearne et al.
Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France
Poster de conférence hal-04225415 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , J Oh , Xuelian Li , Laura Gallo et al.
10. International Symposium on Root Development, May 2023, Ghent, Belgium.
Poster de conférence hal-04466536 v1
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Improving genomic predictions with inbreeding and non-additive effects using two hybrid admixed populations in maize

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.
Eucarpia Biometrics, Sep 2022, Gif-sur-Yvette, France. 2022
Poster de conférence hal-04132668 v1

Genomic prediction across two breeding cycles in maize silage using a factorial approach

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.
XVIII Eucarpia biometrics in plant breeding conference, Sep 2022, GIF-SUR-YVETTE, France
Poster de conférence hal-04458114 v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.
Congrès Analytics 2022, Sep 2022, Nantes, France.
Poster de conférence hal-03879730 v1
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Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541379 v1

De novo assembling 19 maize inbred lines of importance for European breeding

C. Vitte , C. Eché , C. Lampietro , E. Denis , C. Birbes et al.
63rd Annual Maize Genetics Conference, Mar 2021, Visio conference, United States
Poster de conférence hal-04478806 v1
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De novo assembling 19 maize inbred lines of the European germplasm

Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis et al.
63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence hal-03539396 v1
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Structural variants detection and de novo genome assembly of a Maize line

Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541316 v1

Genetic variability of the expression of plasma membrane aquaporins in maize leaves: from eQTLs to characterization of cis-and trans-acting regulatory factors

Laurie Maistriaux , Maxime J. Laurent , Estelle Teirlinckx , Linda Jeanguenin , Santiago Alvarez Prado et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States
Poster de conférence hal-03368769 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.
63. Annual Maize Genetics Meeting, Mar 2021, Online, United States.
Poster de conférence hal-03368767 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.
ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online, United States.
Poster de conférence hal-04167184 v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States
Poster de conférence hal-03368764 v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence hal-02947690 v1

Expanding european flint maize panels for genome-wide association and genomic selection studies

Alain Charcosset , Stephane S. Nicolas , Delphine Madur , Valerie Combes , Sophie Pin et al.
61. Annual maize genetics conference, Mar 2019, St Louis, United States. , 335 p., 2019, 61st Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02735057 v1
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Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France.
Poster de conférence hal-03879878 v1

Responses to selection for adaptation to temperate conditions in tropical drought tolerant maize production

Brigitte Gouesnard , Anne Zanetto , Carine Palaffre , Romain Chapuis , Mariangela Arca et al.
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Poster de conférence hal-02736402 v1

Diversity of maize landraces from south-west of France: origin and morphological differentiation analyzes

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Jacques David et al.
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Poster de conférence hal-02735058 v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , A.E. Melchinger et al.
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Poster de conférence hal-02734558 v1

Identifiability and Inference of Relatedness between Individuals

Tristan Mary-Huard , Alain Charcosset , Fabien Laporte
11. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2015
Poster de conférence hal-02740107 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02733631 v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02734955 v1
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Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data

Johann J. Joets , Sylvie Coursol , Olivier Turc , Llorenç Cabrera-Bosquet , Marie-Laure Magniette Martin-Magniette et al.
First International Plant Systems Biology meeting, Sep 2018, Roscoff, France
Poster de conférence hal-02955192 v1

Efficient ReML inference in the Variance Component Mixed Models using Min-Max procedures

Tristan Mary-Huard , Fabien Laporte , Alain Charcosset
17. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2018
Poster de conférence hal-02736285 v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02734953 v1

Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

A. Darracq , Clémentine Vitte , S. Nicolas , J. Duarte , J.P. Pichon et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478798 v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
60th Annual Maize Genetics Conference, Mar 2018, Paris, France
Poster de conférence hal-03879934 v1

Diversity of maize landraces from south-west of France: origin and morphological differentiation analyzes

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Jacques David et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02733632 v1
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The Zea French Biological Resource Centre: conservation and utilization of maize genetic resources in France

Anne Zanetto , Carine Palaffre , Cyril Bauland , Jean Beigbeder , Stéphanie Castel et al.
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018
Poster de conférence hal-02738291 v1
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Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data

Johann Joets , Sylvie Coursol , Olivier Turc , Llorenç Cabrera Bosquet , Marie-Laure Martin-Magniette et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018
Poster de conférence hal-02738241 v1

AMAIZING, a project on Maize Integrative Genomics supported by the French program “Investments for the Future”.

A. Charcosset , J. Joets , Clémentine Vitte , L. Moreau , C. Giauffret et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478799 v1
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Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France.
Poster de conférence hal-03879943 v1
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Exploring QTLxE in a network of fields: identification of QTLs associated with scenarios of heat and drought for predicting yields in future climates

Emilie Millet , W. Kruijer , Stephane Nicolas , Aude Coupel-Ledru , Alain Charcosset et al.
Interdrought V, Feb 2017, Hyderabad, India. 2017
Poster de conférence hal-01605102 v1

Analysis and structuration of the genetic diversity of Pyrenean maize populations with a 50K SNP array by a bulk and an one individual plant approach

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Brigitte Gouesnard
EUCARPIA Genetic Resources 2017 - Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. 2017
Poster de conférence hal-02785296 v1

Diversity analysis within a collection of 1191 Flint collection using Genotyping By Sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany. , 2017
Poster de conférence hal-02789732 v1
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BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

Yannick de Oliveira , Lydia Ait-Braham , Johann Joets , Clément Mabire , Sandra Negro et al.
5ième meeting annuel d’AMAIZING, Nov 2016, Paris, France
Poster de conférence hal-01404747 v1

Comparison of High-Throughput Genotyping Technologies in Maize: Increase in number of regions detected in association genetics

Sandra Silvia Negro , Emilie Millet , W. Kruijer , Delphine Madur , Marie-Christine Le Paslier et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Poster de conférence hal-01535330 v1
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Thaliadb : A database dedicated to association genetics in plants

Guy-Ross Assoumou-Ella , Yannick de Oliveira , Johann Joets , Alain Charcosset
Journées Ouvertes en Biologie, Informatique & Mathématiques 2015, Jul 2015, Clermont-Ferrand, France
Poster de conférence hal-02417610 v1

Adaptation to temperate conditions of sub-tropical drought tolerant maize populations

Brigitte Gouesnard , Anne Zanetto , Mariangela Arca , Stephane S. Nicolas , Alain A. Charcosset et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Poster de conférence hal-02743412 v1
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Thaliadb : A database dedicated to association genetic in plants

Yannick de Oliveira , Guy-Ross Assoumou-Ella , Alain Charcosset , Johann Joets
European Conference on Computational Biology 2014, Sep 2014, Strasbourg, France
Poster de conférence hal-02417594 v1
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Thaliadb A database dedicated to association genetics in plants

Yannick de Oliveira , Julien Cornouiller , Guy-Ross Assoumou-Ella , Johann Joets , Alain Charcosset
Journées Ouvertes en Biologie, Informatique & Mathématiques 2012, Jul 2012, Rennes, France
Poster de conférence hal-02417582 v1
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Journées Scientifiques du Département Sciences de la Vie et Santé - AgroParisTech

Carmen Bessa-Gomes , Anaïs Cazals , Blanche Collard , François Chiron , Matthieu Jules et al.
Journées Scientifiques du Département Sciences de la Vie et Santé - AgroParisTech, Apr 2024, Palaiseau, France. 2025
Proceedings/Recueil des communications hal-05339375 v1
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Building a calibration set for genomic prediction, characteristics to be considered, and optimization approaches

Simon Rio , Alain Charcosset , Tristan Mary-Huard , Laurence Moreau , Renaud Rincent
Ahmadi Nourollah (ed.); Bartholomé Jérôme (ed.). Genomic prediction of complex traits: methods and protocols, 2467 (2467), Humana Press; Springer, pp.77-112, 2022, Methods in Molecular Biology, 978-1-0716-2204-9. ⟨10.1007/978-1-0716-2205-6_3⟩
Chapitre d'ouvrage hal-04343930 v1
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Les mélanges de variétés ont contribué à l’expansion géographique mondiale d’une espèce cultivée, le maïs

Maud Tenaillon , Alain Charcosset
101 secrets de l’ADN, 2019
Chapitre d'ouvrage hal-02345700 v1

OptiMAS: a decision support tool to conduct marker-assisted selection programs

Fabio Valente , Franck Gauthier , Nicolas Bardol , Guylaine Blanc , Johann J. Joets et al.
Crop Breeding, 1145, Humana Press Inc., 20 p., 2014, Methods in Molecular Biology, 978-1-4939-0446-4 978-1-4939-0445-7. ⟨10.1007/978-1-4939-0446-4_9⟩
Chapitre d'ouvrage hal-02796957 v1
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L'histoire européenne du maïs revisitée à la lumière de la génétique : la contribution de la côte est de l'Amérique du Nord

Monique Chastanet , Alain Charcosset
TREMBLAY Roland (éd.). Les Iroquoiens du Saint-Laurent, peuple du maïs volume en anglais : The Saint Lawrence Iroquoians, Corn People, Musée d'Archéologie et d'Histoire de Montréal/Les Editions de l'Homme, p. 50-51 et 137, 2007
Chapitre d'ouvrage halshs-00687756 v1

Le maïs et le blé, céréales modèles pour la recherche en biologie intégrative et son application à la sélection

Bertrand Hirel , Jacques Le Gouis , P. Perez , Matthieu Falque , Francis Quétier et al.
La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Chapitre d'ouvrage hal-02832017 v1

Evolution moléculaire et validation de gènes candidats

Domenica Manicacci , Alain A. Charcosset
La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Chapitre d'ouvrage hal-02828064 v1

Progress and prospects for marker-assisted selection

A. Gallais , Alain A. Charcosset , Isabelle I. Goldringer , Frederic F. Hospital , L. Moreau
Quantitative genetics and breeding methods: the way ahead, 96, INRA Editions, 2001, Colloques de l'INRA, 2-7380-0952-2
Chapitre d'ouvrage hal-02833774 v1

A French cooperative programme for management and utilization of maize genetic resources.

A. Gallais , A. Barrière , A. Boyat , A. Charcosset , J. Dallard et al.
Broadening the Genetic Base of Crop Production, International Plant Genetic Resources Institute (IPGRI) Food and Agriculture Organization of the United Nations (FAO) CABI, pp.331-340, 2000, ⟨10.1079/9780851994116.0331⟩
Chapitre d'ouvrage hal-04300838 v1

Intérêts des marqueurs en sélection

Alain A. Charcosset , A. Gallais
Les marqueurs moléculaires en génétique et biotechnologies végétales, INRA Editions, 1999
Chapitre d'ouvrage hal-02835772 v1

Large-scale composite hypothesis testing for omics analyses.

Annaïg de Walsche , Franck Gauthier , Alain Charcosset , Tristan Mary-Huard
2024
Pré-publication, Document de travail hal-04508559 v1

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

Alizarine Lorenzi , Cyril Bauland , Sophie Pin , Delphine Madur , Valérie Combes et al.
2023
Pré-publication, Document de travail hal-04351595 v1
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metaGE: Investigating Genotype × Environment interactions through meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stephane Nicolas et al.
2024
Pré-publication, Document de travail hal-04507780 v1
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Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca

Mariangela Arca , Tristan Mary-Huard , Cyril Bauland , Brigitte Gouesnard , Aurélie Berard et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965048 v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stephane Nicolas , Delphine Madur et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965051 v1

Diversity patterns and selective sweeps in a Southeast European panel of maize inbred lines as combined with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.
2021
Pré-publication, Document de travail hal-03372006 v1
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Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool

Mariangela Arca , Brigitte Gouesnard , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965049 v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: an application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02789968 v1
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Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788569 v1
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Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02786986 v1