Alain Charcosset

289
Documents

Publications

Publications

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Phylogenetic relationships and genetic diversity of Tunisian maize landraces

Mohamed Dhia Eddine Hammami , Delphine Madur , Zayneb Kthiri , Agustin Galaretto , Stéphane D Nicolas et al.

PLoS ONE, 2025, 20 (1), pp.e0316185. ⟨10.1371/journal.pone.0316185⟩

Article dans une revue hal-05150986v1
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Evolution of population structure in a commercial European hybrid dent maize breeding program and consequences on genetic diversity

Romain Kadoumi , Nicolas Heslot , Fabienne Henriot , Alain Murigneux , Mathilde Berton et al.

TAG Theoretical and Applied Genetics, 2025, 138, ⟨10.1007/s00122-025-05008-5⟩

Article dans une revue hal-05331882v1
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metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stéphane Nicolas et al.

PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩

Article dans une revue hal-04994005v1

A high-throughput phenotyping dataset for GWAS analysis of maize under combined drought and heat stress

Rongli Shi , Ana López-Malvar , Dominic Knoch , Henning Tschiersch , Marc Heuermann et al.

Data in Brief, 2025, 62, pp.111947. ⟨10.1016/j.dib.2025.111947⟩

Article dans une revue (data paper) hal-05390075v1
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Large-scale composite hypothesis testing procedure for omics data analyses

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard

NAR Genomics and Bioinformatics, 2025, 7 (3), ⟨10.1093/nargab/lqaf118⟩

Article dans une revue hal-05291677v1
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Genomic prediction-aided incorporation of genetic resources into elite breeding: lessons from a collaborative multiparental design in flint maize

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland , Carine Palaffre et al.

TAG Theoretical and Applied Genetics, 2025, 138, pp.262. ⟨10.1007/s00122-025-05034-3⟩

Article dans une revue hal-05331884v1
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Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions

Baber Ali , Tristan Mary‐huard , Alain Charcosset , Laurence Moreau , Renaud Rincent

Plant Genome, 2025, 18 (1), ⟨10.1002/tpg2.20553⟩

Article dans une revue hal-05158192v1

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

Alizarine Lorenzi , Cyril Bauland , Sophie Pin , Delphine Madur , Valérie Combes et al.

TAG Theoretical and Applied Genetics, 2024, 137 (3), pp.75. ⟨10.1007/s00122-024-04566-4⟩

Article dans une revue hal-05292790v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli et al.

Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩

Article dans une revue hal-04645117v1

High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

Baber Ali , Bertrand Huguenin-Bizot , Maxime J Laurent , François Chaumont , Laurie Maistriaux et al.

TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩

Article dans une revue hal-04677733v1
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize

Dimitri Sanchez , Antoine Allier , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland et al.

TAG Theoretical and Applied Genetics, 2024, 137 (1), pp.19. ⟨10.1007/s00122-023-04509-5⟩

Article dans une revue hal-04401428v1
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Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression

Laurie C Maistriaux , Maxime J Laurent , Linda Jeanguenin , Santiago Alvarez Prado , Joseph Nader et al.

Plant Physiology, 2024, 196 (1), pp.368-384. ⟨10.1093/plphys/kiae326⟩

Article dans une revue hal-04639221v1
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Detecting directional and non-directional epistasis in bi-parental populations using genomic data

Simon Rio , Alain Charcosset , Laurence Moreau , Tristan Mary-Huard

Genetics, 2023, 224 (3), pp.iyad089. ⟨10.1093/genetics/iyad089⟩

Article dans une revue hal-04215609v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland et al.

Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩

Article dans une revue hal-04103846v2
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels

Aurélien Beugnot , Tristan Mary-Huard , Cyril Bauland , Valerie Combes , Delphine Madur et al.

TAG Theoretical and Applied Genetics, 2023, 136, pp.219. ⟨10.1007/s00122-023-04431-w⟩

Article dans une revue hal-04295142v1
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Improving the use of plant genetic resources to sustain breeding programs’ efficiency

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Antoine Allier , Laurence Moreau et al.

Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205780119. ⟨10.1073/pnas.2205780119⟩

Article dans une revue hal-04215595v1

Impact of interpopulation distance on dominance variance and average heterosis in hybrid populations within species

Andrés Legarra , David Omar Gonzalez-Dieguez , Alain Charcosset , Zulma G. Vitezica Article dans une revue hal-04095875v1
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Genetic diversity and selection signatures in a gene bank panel of maize inbred lines from Southeast Europe compared with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.

BMC Plant Biology, 2023, 23 (1), pp.315. ⟨10.1186/s12870-023-04336-2⟩

Article dans une revue hal-04189388v1
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Genetic Variation for Cold Tolerance in Two Nested Association Mapping Populations

Pedro Revilla , Ana Butrón , Víctor Manuel Rodriguez , Renaud Rincent , Alain Charcosset et al.

Agronomy, 2023, 13 (1), pp.195. ⟨10.3390/agronomy13010195⟩

Article dans une revue hal-04160043v1
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.

Genetics, 2022, 220 (4), pp.1-18. ⟨10.1093/genetics/iyac018⟩

Article dans une revue hal-03659124v1
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Efficient ReML inference in variance component mixed models using a Min-Max algorithm

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard

PLoS Computational Biology, 2022, 18 (1), pp.e1009659. ⟨10.1371/journal.pcbi.1009659⟩

Article dans une revue hal-04068810v1
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.

TAG Theoretical and Applied Genetics, 2022, 135 (9), pp.3143 - 3160. ⟨10.1007/s00122-022-04176-y⟩

Article dans une revue hal-04216367v1
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Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions

Claude Welcker , Nadir Abusamra Spencer , Olivier Turc , Ítalo Stefanine Correia Granato , Romain Chapuis et al.

Nature Communications, 2022, 13, pp.3225. ⟨10.1038/s41467-022-30872-w⟩

Article dans une revue hal-03709268v1

Genomic Prediction of Hybrid Crops Allows Disentangling Dominance and Epistasis

David González-Diéguez , Andres Legarra , Alain Charcosset , Laurence Moreau , Christina Lehermeier et al. Article dans une revue hal-03154408v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stéphane D. Nicolas , Delphine Madur et al.

PLoS ONE, 2021, 16 (2), pp.e0238334. ⟨10.1371/journal.pone.0238334⟩

Article dans une revue hal-03210018v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland et al.

Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩

Article dans une revue hal-03368756v1

Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs

A. Seye , C. Bauland , A. Charcosset , Laurence Moreau

TAG Theoretical and Applied Genetics, 2020, 133 (6), pp.1995-2010. ⟨10.1007/s00122-020-03573-5⟩

Article dans une revue hal-04458331v1
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A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩

Article dans une revue hal-03009577v1

Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Alain Charcosset , Laurence Moreau

TAG Theoretical and Applied Genetics, 2020, 133 (1), pp.201-215. ⟨10.1007/s00122-019-03451-9⟩

Article dans une revue hal-02958926v1
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Optimized breeding strategies to harness genetic resources with different performance levels

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Laurence Moreau , Alain Charcosset

BMC Genomics, 2020, 21 (1), pp.349. ⟨10.1186/s12864-020-6756-0⟩

Article dans une revue hal-04328215v1

Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize

Simon Rio , Laurence Moreau , Alain Charcosset , Tristan Mary-Huard

Genetics, 2020, 216 (1), pp.27-41. ⟨10.1534/genetics.120.303278⟩

Article dans une revue hal-02973043v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.

PLoS Genetics, 2020, 16 (3), pp.e1008241. ⟨10.1371/journal.pgen.1008241⟩

Article dans une revue hal-02973032v1

Concevoir et évaluer les maïs du futur

Alain Charcosset , François Tardieu , Peter Rogowsky , Clémentine Vitte , Catherine Giauffret et al.

Perspectives Agricoles, 2020, 480

Article dans une revue hal-03374756v1

Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a north european grain maize program

Antoine Allier , Simon Teyssèdre , Christina Lehermeier , Bruno Claustres , Stephane Maltese et al.

TAG Theoretical and Applied Genetics, 2019, 132 (5), pp.1321-1334. ⟨10.1007/s00122-019-03280-w⟩

Article dans une revue hal-02627525v1

Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield

Adama I Seye , Cyril Bauland , Héloïse Giraud , Valérie Méchin , Matthieu Reymond et al.

TAG Theoretical and Applied Genetics, 2019, 132 (5), pp.1523-1542. ⟨10.1007/s00122-019-03296-2⟩

Article dans une revue hal-02617673v1
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Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.

BMC Plant Biology, 2019, 19 (1), ⟨10.1186/s12870-019-1926-4⟩

Article dans une revue hal-02627073v1

Genomic prediction of maize yield across European environmental conditions

Emilie Millet , Willem Kruijer , Aude Coupel-Ledru , Santiago Alvarez Prado , Llorenç Cabrera Bosquet et al.

Nature Genetics, 2019, 51 (6), pp.952-956. ⟨10.1038/s41588-019-0414-y⟩

Article dans une revue hal-02618545v1

Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset

TAG Theoretical and Applied Genetics, 2019, 132 (1), pp.81-96. ⟨10.1007/s00122-018-3196-1⟩

Article dans une revue hal-02625890v1
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Usefulness criterion and post-selection parental contributions in multi-parental crosses: Application to polygenic trait Introgression

Antoine Allier , Laurence Moreau , Alain Charcosset , Simon Teyssèdre , Christina Lehermeier

G3, 2019, 9 (5), pp.1469-1479. ⟨10.1534/g3.119.400129⟩

Article dans une revue hal-02620266v1
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Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection

Antoine Allier , Christina Lehermeier , Alain Charcosset , Laurence Moreau , Simon Teyssèdre

Frontiers in Genetics, 2019, 10, ⟨10.3389/fgene.2019.01006⟩

Article dans une revue hal-03111538v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon et al.

BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩

Article dans une revue hal-02625253v1
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Linkage analysis and association mapping QTL detection models for hybrids between multiparental populations from two heterotic groups: application to biomass production in maize (Zea mays L.).

Héloïse Giraud , Cyril Bauland , Matthieu Falque , Delphine Madur , Valerie Combes et al.

G3, 2017, 7 (11), pp.3649-3657. ⟨10.1534/g3.117.300121⟩

Article dans une revue hal-02617705v1

Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs

Fabien Laporte , Alain Charcosset , Tristan Mary

Biometrics, 2017, ⟨10.1111/biom.12634⟩

Article dans une revue hal-01568867v1
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Genetic diversity and population structure of native maize populations in Latin America and the Caribbean

Claudia A. Bedoya , Susanne Dreisigacker , Sarah Hearne , Jorge Franco , Celine Mir et al.

PLoS ONE, 2017, 12 (4), pp.e0173488. ⟨10.1371/journal.pone.0173488⟩

Article dans une revue hal-01568886v1
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

Jean-Tristan Brandenburg , Tristan Mary , Guillem Rigaill , Sarah J. Hearne , Hélène Corti et al.

PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩

Article dans une revue hal-01605143v1

Reciprocal genetics: identifying QTL for general and specific combining abilities in hybrids between multiparental populations from two maize (Zea mays L.) heterotic groups

Héloïse Giraud , Cyril Bauland , Matthieu Falque , Delphine Madur , Valerie Combes et al.

Genetics, 2017, 207 (3), pp.1167-1180. ⟨10.1534/genetics.117.300305⟩

Article dans une revue hal-03818440v1

Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits

Sophie Bouchet , Pascal Bertin , T Presterl , Philippe Jamin , Denis Coubriche et al.

Heredity, 2017, 118 (3), pp.249-259. ⟨10.1038/hdy.2016.88⟩

Article dans une revue hal-01481767v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.

TAG Theoretical and Applied Genetics, 2017, 130 (10), ⟨10.1007/s00122-017-2949-6⟩

Article dans une revue hal-01595534v1
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Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations

Renaud Rincent , Alain Charcosset , Laurence Moreau

TAG Theoretical and Applied Genetics, 2017, 130 (11), pp.1-17. ⟨10.1007/s00122-017-2956-7⟩

Article dans une revue hal-01583795v1

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents

Amandine Lariepe , Laurence Moreau , J. Laborde , Cyril Bauland , S. Mezmouk et al.

TAG Theoretical and Applied Genetics, 2017, 130 (2), pp.403-417. ⟨10.1007/s00122-016-2822-z⟩

Article dans une revue hal-01481772v1

Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios

Emilie Millet , Claude Welcker , Willem Kruijer , Sandra Negro , Aude Coupel-Ledru et al.

Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.00621⟩

Article dans une revue hal-01362496v1
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Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla , Victor Manuel Rodriguez , Amando Ordas , Renaud Rincent , Alain Charcosset et al.

BMC Plant Biology, 2016, 16, pp.1-10. ⟨10.1186/s12870-016-0816-2⟩

Article dans une revue hal-02638082v1
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Fortune telling: metabolic markers of plant performance

Olivier Fernandez , Maria Urrutia , Stéphane Bernillon , Catherine Giauffret , Francois F. Tardieu et al.

Metabolomics, 2016, 12 (10), ⟨10.1007/s11306-016-1099-1⟩

Article dans une revue hal-02637624v1

Study on essential derivation in maize: III. Selection and evaluation of a panel of single nucleotide polymorphism loci for use in European and North American germplasm

Yves Rousselle , Elizabeth Jones , Alain Charcosset , Philippe Moreau , Kelly Robbins et al.

Crop Science, 2015, 55 (3), pp.1170-1180. ⟨10.2135/cropsci2014.09.0627⟩

Article dans une revue hal-01536501v1

Usefulness of Multiparental Populations of Maize (Zea mays L.) for Genome-Based Prediction

Christina Lehermeier , Nicole Kraemer , Eva Bauer , Cyril Bauland , Christian Camisan et al.

Genetics, 2014, 198 (1), pp.3 - 16 +. ⟨10.1534/genetics.114.161943⟩

Article dans une revue hal-02636667v1

Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production

Renaud Rincent , Stephane S. Nicolas , Sophie Bouchet , T. Altmann , Dominique D. Brunel et al.

TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩

Article dans une revue hal-02637142v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger et al.

Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩

Article dans une revue hal-02634244v1

Mesenchymal stem cell therapy induces glucocorticoid synthesis in colonic mucosa and suppresses radiation-activated T cells New insights into MSC immunomodulation

R. Bessout , A. Semont , C. Demarquay , A. Charcosset , M. Benderitter et al.

Mucosal Immunology, 2014, 7 (3), pp.656-669. ⟨10.1038/mi.2013.85⟩

Article dans une revue hal-02614050v1

Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize.

Héloïse Giraud , Christina Lehermeier , Eva Bauer , Matthieu M. Falque , Vincent Segura et al.

Genetics, 2014, 198 (4), pp.1717-1734. ⟨10.1534/genetics.114.169367⟩

Article dans une revue hal-02637060v1
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Cold Tolerance in Two Large Maize Inbred Panels Adapted to European Climates

Pedro Revilla , Victor Manuel Rodriguez , Amando Ordas , Renaud Rincent , Alain Charcosset et al.

Crop Science, 2014, 54 (5), pp.1981 - 1991. ⟨10.2135/cropsci2013.11.0733⟩

Article dans une revue hal-02640160v1
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Intraspecific variation of recombination rate in maize

Eva Bauer , Matthieu M. Falque , Hildrun Walter , Cyril Bauland , Christian Camisan et al.

Genome Biology, 2013, 14 (9), ⟨10.1186/gb-2013-14-9-r103⟩

Article dans une revue hal-02649037v1

Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism

Nicolas Bardol , M. Ventelon , Brigitte B. Mangin , Sylvain Jasson , V. Loywick et al.

TAG Theoretical and Applied Genetics, 2013, 126 (11), pp.2717 - 2736. ⟨10.1007/s00122-013-2167-9⟩

Article dans une revue istex hal-02642570v1
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Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Sophie Bouchet , Bertrand Servin , Pascal Bertin , Delphine D. Madur , Valerie V. Combes et al.

PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩

Article dans une revue hal-02652500v1

OptiMAS: A Decision Support Tool for Marker-Assisted Assembly of Diverse Alleles

Fabio Valente , Franck Gauthier , Nicolas Bardol , Mathilde Blanc , Johann J. Joets et al.

Journal of Heredity, 2013, 104 (4), pp.586 - 590. ⟨10.1093/jhered/est020⟩

Article dans une revue hal-02646077v1

Out of America: tracing the genetic footprints of the global diffusion of maize

Celine C. Mir , Tatiana Zerjal , Valerie V. Combes , Fabrice F. Dumas , Delphine D. Madur et al.

TAG Theoretical and Applied Genetics, 2013, 126 (11), pp.2671-2682. ⟨10.1007/s00122-013-2164-z⟩

Article dans une revue istex hal-01000872v1

Maize genetic diversity and association mapping using transposable element insertion polymorphisms

Tatiana Zerjal , Agnes A. Rousselet , Corinne C. Mhiri , Valerie V. Combes , Delphine D. Madur et al.

TAG Theoretical and Applied Genetics, 2012, 124 (8), pp.1521-1537. ⟨10.1007/s00122-012-1807-9⟩

Article dans une revue istex hal-00999979v1

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

Marion Truntzler , N. Ranc , M. C. Sawkins , Stephane S. Nicolas , Doménica Manicacci et al.

TAG Theoretical and Applied Genetics, 2012, 125 (4), pp.731 - 747. ⟨10.1007/s00122-012-1866-y⟩

Article dans une revue istex hal-02643782v1

Flowering Time in Maize: Linkage and Epistasis at a Major Effect Locus

Eléonore Durand , Sophie Bouchet , Pascal Bertin , Adrienne Ressayre , Philippe Jamin et al.

Genetics, 2012, 190 (4), pp.1547 - +. ⟨10.1534/genetics.111.136903⟩

Article dans une revue hal-02648939v1
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The genetic basis of heterosis: multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.)

Amandine Lariepe , Brigitte Mangin , Sylvain Jasson , Valerie Combes , Fabrice Dumas et al.

Genetics, 2012, 190 (2), pp.795-811. ⟨10.1534/genetics.111.133447⟩

Article dans une revue hal-00986094v1

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

Olivier Sosnowski , Alain A. Charcosset , Johann J. Joets

Bioinformatics, 2012, 28 (15), pp.2082 - 2083. ⟨10.1093/bioinformatics/bts313⟩

Article dans une revue hal-02646731v1

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)

Renaud Rincent , Denis Laloë , Stephane Nicolas , T. Altmann , Dominique Brunel et al.

Genetics, 2012, 192 (2), pp.715-728. ⟨10.1534/genetics.112.141473⟩

Article dans une revue hal-01019845v1
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A large maize (Zea mays L.) SNP genotyping array : development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

Martin W. Ganal , Gregor Durstewitz , Andreas Polley , Aurélie A. Berard , Edward S. Buckler et al.

PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028334⟩

Article dans une revue hal-02652466v1

Gene flow among different teosinte taxa and into the domesticated maize gene pool

Marilyn L. Warburton , Garrison Wilkes , S. Taba , Alain A. Charcosset , Celine Mir et al.

Genetic Resources and Crop Evolution, 2011, 58 (8), pp.1243 - 1261. ⟨10.1007/s10722-010-9658-1⟩

Article dans une revue istex hal-02650119v1

A common genetic determinism for sensitivities to soil water deficit and evaporative demand: meta-analysis of quantitative trait loci and introgression lines of maize

Claude Welcker , Walid Sadok , Grégoire Dignat , Morgan Renault , Silvio Salvi et al.

Plant Physiology, 2011, 157 (2), pp.718-729. ⟨10.1104/pp.111.176479⟩

Article dans une revue hal-02651406v1

A European perspective on maize history

Maud M. Tenaillon , Alain A. Charcosset

Comptes Rendus. Biologies, 2011, 334 (3), pp.221 - 228. ⟨10.1016/j.crvi.2010.12.015⟩

Article dans une revue hal-02647592v1
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Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

Sofiane Mezmouk , Pierre Dubreuil , Mickael Bosio , Laurent Decousset , Alain A. Charcosset et al.

TAG Theoretical and Applied Genetics, 2011, 122, pp.1149-1160. ⟨10.1007/s00122-010-1519-y⟩

Article dans une revue hal-02648533v1

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

Martin Ganal , Gregor Durstewitz , Andreas Polley , Aurélie Bérard , Edward Buckler et al.

PLoS ONE, 2011, 6 (12), pp.e28334. ⟨10.1371/journal.pone.0028334⟩

Article dans une revue hal-03818415v1
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Genetic variation for lignin content and cell wall digestibility in early maize lines derived from ancient landraces

Yves Y. Barrière , Alain A. Charcosset , Dominique Dénoue , Delphine D. Madur , Cyril Bauland et al.

Maydica, 2010, 55 (1), pp.65-74

Article dans une revue hal-02666723v1

The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations

Yung-Fen Huang , Delphine Madur , Valérie Combes , Chin-Long Ky , Denis Coubriche et al.

Genetics, 2010, 186 (1), pp.395-404. ⟨10.1534/genetics.110.113878⟩

Article dans une revue hal-02661097v1
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Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds

Eléonore Durand , Maud Tenaillon , Celine Ridel , Denis Coubriche , Philippe Jamin et al.

BMC Evolutionary Biology, 2010, 10 (2), pp.1-21. ⟨10.1186/1471-2148-10-2⟩

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Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes

Marion Truntzler , Yves Y. Barrière , M.C. Sawkins , D. Lespinasse , J. Betran et al.

TAG Theoretical and Applied Genetics, 2010, 121 (8), pp.1465-1482. ⟨10.1007/s00122-010-1402-x⟩

Article dans une revue istex hal-02663445v1
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QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

Valérie Capelle , Carine C. Remoue , Laurence Moreau , Agnes Reyss , Aline Mahé et al.

BMC Plant Biology, 2010, 10 (2), pp.1-22. ⟨10.1186/1471-2229-10-2⟩

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Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10

Sebastien Ducrocq , Catherine Giauffret , Delphine D. Madur , Valerie V. Combes , Fabrice F. Dumas et al.

Genetics, 2009, 183 (4), pp.1555-1563. ⟨10.1534/genetics.109.106922⟩

Article dans une revue hal-02667927v1

Overview of QTL detection in plants and tests for synergistic epistatic interactions

Jean-Luc J.-L. Jannink , Laurence L. Moreau , Gilles Charmet , Alain A. Charcosset

Genetica, 2009, 136 (2), pp.225-236. ⟨10.1007/s10709-008-9306-2⟩

Article dans une revue istex hal-00964463v1

Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene

Létizia Camus-Kulandaivelu , Jean-Baptiste Veyrieras , Delphine D. Madur , Valerie V. Combes , Marie Fourmann et al.

Genetics, 2006, 172 (4), pp.2449-2463. ⟨10.1534/genetics.105.048603⟩

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Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

Antoine Martin , Judy Lee , Thomas Kichey , Denise Gerentes , Michel Zivy et al.

The Plant cell, 2006, 18 (11), pp.3252-74. ⟨10.1105/tpc.106.042689⟩

Article dans une revue hal-01927336v1

The domestification of plants: from the gather to post-genomics

Joseph J. Jahier , Paul P. Chalhoub , Alain A. Charcosset

Biofutur, 2006, 266, pp.28-33

Article dans une revue hal-02656297v1

Heterosis and combining ability for maize adaptation to tropical acid soils: implications for future breeding strategies

Claude Welcker , C. The , B. Andreau , C. de León , S.N. Parentoni et al.

Crop Science, 2005, 45, pp.2405-2413

Article dans une revue hal-02674447v1

Linkage Mapping of 1454 New Maize Candidate Gene Loci

Matthieu Falque , Laurent Décousset , Delphine Dervins , Anne-Marie Jacob , Johann Joets et al.

Genetics, 2005, 170 (4), pp.1957-1966. ⟨10.1534/genetics.104.040204⟩

Article dans une revue hal-03818397v1

BioMercator: integrating genetic maps and QTL towards discovery of candidate genes

A. Arcade , A. Labourdette , Matthieu Falque , Brigitte B. Mangin , Fabien F. Chardon et al.

Bioinformatics, 2005, 20 (14), pp.2324-2326. ⟨10.1093/bioinformatics/bth230⟩

Article dans une revue hal-02680717v1
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European maize landraces : genetic diversity, core collection definition and methodology of use

Brigitte Gouesnard , Jacques Dallard , P. Bertin , Armand Boyat , A. Charcosset

Maydica, 2005, 50 (3/4), pp.225-234

Article dans une revue hal-02675620v1

Experimental evaluation of several cycles of marker-assisted selection in maize

L. Moreau , Alain A. Charcosset , A. Gallais

Euphytica, 2004, 137 (1), pp.111-118

Article dans une revue hal-02669857v1

Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome

Fabien F. Chardon , G. Virlon , L. Moreau , Matthieu Falque , Johann Joets et al.

Genetics, 2004, 168, pp.2169-2185. ⟨10.1534/genetics.104.032375⟩

Article dans une revue hal-02678548v1

Use of molecular markers for the development of new cultivars and the evaluation of genetic diversity

Alain A. Charcosset , L. Moreau

Euphytica, 2004, 137 (1), pp.81-94

Article dans une revue hal-02669609v1

Combining quantitative trait loci analysis and an ecophysiological model to analyse the genetic variability of the responses of maize leaf growth to temperature and water deficit

Matthieu Reymond , Bertrand Muller , Agnès Leonardi , Alain A. Charcosset , Francois F. Tardieu

Plant Physiology, 2003, 131, pp.664-675

Article dans une revue hal-02679444v1

Maize introduction into Europe: the history reviewed in the light of molecular data

C. Rebourg , M. Chastanet , Brigitte Gouesnard , Claude Welcker , Pierre Dubreuil et al.

TAG Theoretical and Applied Genetics, 2003, 106, pp.895-903. ⟨10.1007/s00122-002-1140-9⟩

Article dans une revue istex hal-02678281v1

Analysis of photoperiod sensitivity within a collection of tropical maize populations

Brigitte Gouesnard , C. Rebourg , Claude Welcker , Alain A. Charcosset

Genetic Resources and Crop Evolution, 2002, 49, pp.471-481

Article dans une revue hal-02669289v1

RFLP diversity and relationships among traditional European maize populations

P. Gauthier , Brigitte Gouesnard , J. Dallard , R. Redaelli , C. Rebourg et al.

TAG Theoretical and Applied Genetics, 2002, 105, pp.91-99. ⟨10.1007/s00122-002-0903-7⟩

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Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines

Agnes Bouchez , Frederic F. Hospital , Mathilde M. Causse , A. Gallais , Alain A. Charcosset

Genetics, 2002, 162, pp.1945-1959

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Interpretation of genotype X environment interactions for early maize hybrids over 12 years

C. Epinat-Le Signor , S. Dousse , Josiane Lorgeou , J.B. Denis , Raymond Bonhomme et al.

Crop Science, 2001, 41 (3), pp.663-669

Article dans une revue hal-02679147v1

Large scale molecular analysis of traditional European maize populations. Relationships with morphological variation

C. Rebourg , Brigitte Gouesnard , Alain A. Charcosset

Heredity, 2001, 86, pp.574-587

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Genetic analysis and QTL mapping of cell wall digestibility and lignification in silage maize

Valérie Méchin , O. Argillier , E. Guingo , L. Moreau , Alain A. Charcosset et al.

Crop Science, 2001, 41 (3), pp.690-697

Article dans une revue hal-02672001v1

Etude de l'efficacité de la sélection assistée par marqueurs par rapport à la sélection classique

L. Moreau , Alain A. Charcosset , A. Gallais

Oléagineux, Corps Gras, Lipides, 2001, 8 (5), pp.496-501

Article dans une revue hal-02672153v1
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Economic efficiency of one cycle of marker-assisted selection

L. Moreau , Stephane Lemarié , Alain A. Charcosset , A. Gallais

Crop Science, 2000, 40 (2), pp.329-337. ⟨10.2135/cropsci2000.402329x⟩

Article dans une revue hal-02687413v1

Relationships among maize inbred lines and populations from European and North-American origins as estimated using RFLP markers

Pierre Dubreuil , Alain A. Charcosset

TAG Theoretical and Applied Genetics, 1999, 99, pp.473-480

Article dans une revue hal-02693895v1

Evaluation of a DNA pooled-sampling strategy for estimating the RFLP diversity of maize populations

Pierre Dubreuil , C. Rebourg , Marielle Merlino , Alain A. Charcosset

Plant Molecular Biology Reporter, 1999, 17, pp.123-138

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Apport des marqueurs moléculaires pour l'analyse et l'exploitation des ressources génétiques: exemple des populations de maïs

C. Rebourg , Alain A. Charcosset

Sélectionneur Français, 1999, 50, pp.21-32

Article dans une revue hal-02690906v1

Genetic diversity among maize populations: bulk RFLP analysis of 65 accessions

C. Rebourg , Pierre Dubreuil , Alain A. Charcosset

Maydica, 1999, 44, pp.237-249

Article dans une revue hal-02691452v1

Marker-assisted selection with spatial analysis of unreplicated field trials

L. Moreau , Herve Monod , Alain A. Charcosset , A. Gallais

TAG Theoretical and Applied Genetics, 1999, 98, pp.234-242

Article dans une revue hal-02686218v1

Economic efficiency of one cycle of marker-assisted selection

L. Moreau , S. Lemarie , Alain A. Charcosset , A. Gallais

Crop Science, 1999, 2, pp.329-337

Article dans une revue hal-02693348v1

Genetic diversity within and among maize populations: a comparison between isozyme and nuclear RFLP loci

Pierre Dubreuil , Alain A. Charcosset

TAG Theoretical and Applied Genetics, 1998, 96, pp.577-587

Article dans une revue hal-02697447v1
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First results from a pyramidal recurrent selection system for breeding maize silage

Christine Epinat-Le Signor , Alain Charcosset , Yves Barrière , Cyril Bauland , Maurice Derieux et al.

Agronomie, 1998, 18 (10), pp.649-657

Article dans une revue hal-00885865v1

Marker-assisted selection efficiency in populations of finite size

L. Moreau , Alain A. Charcosset , Frederic F. Hospital , A. Gallais

Genetics, 1998, 148 (03), pp.1353-1365

Article dans une revue hal-02685315v1
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Genetic analysis of root traits in maize

Emmanuelle Guingo , Yannick Hébert , Alain Charcosset

Agronomie, 1998, 18 (3), pp.225-235

Article dans une revue hal-00885882v1

Prediction of maize hybrid silage performance using marker data : comparison of several models for specific combining ability

Alain A. Charcosset , B. Bonnisseau , O. Touchebeuf , Judith Burstin , Pierre Dubreuil et al.

Crop Science, 1998, 38 (1), pp.38-44

Article dans une revue hal-02686886v1
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Genetic analysis of root traits in maize

E. Guingo , Alain A. Charcosset

Agronomie, 1998, 18 (3), pp.225-235

Article dans une revue hal-02689474v1
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First results from a pyramidal recurrent selection system for breeding maize silage

C. Epinat-Le Signor , Alain A. Charcosset , Yves Y. Barrière , Cyril Bauland , M. Derieux et al.

Agronomie, 1998, 18 (10), pp.649-657

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Comparison of RFLP and morphological distances between maize Zea mays L. inbred lines. Consequences for germplasm protection purposes

C. Dillmann , A. Bar-Hen , D. Guerin , Alain A. Charcosset , Alain Murigneux

TAG Theoretical and Applied Genetics, 1997, 95, pp.92-102

Article dans une revue hal-02685480v1

More on the efficiency of marker-assisted selection

Frederic F. Hospital , L. Moreau , F. Lacoudre , Alain A. Charcosset , A. Gallais

TAG Theoretical and Applied Genetics, 1997, 95, 9 p

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Relationship between phenotypic and marker distances: theoretical and experimental investigations

Judith Burstin , A. Charcosset

Heredity, 1997, 79 (5), pp.477-483

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Marker-assisted introgression of quantitative trait loci

Frederic F. Hospital , Alain A. Charcosset

Genetics, 1997, 147, pp.1469-1485

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A composite map of expressed sequences in maize

Mathilde M. Causse , Sylvain Santoni , C. Damerval , Aurélie Maurice , Alain A. Charcosset et al.

Genome, 1996, 39, pp.418-432

Article dans une revue hal-02685489v1

Sampling problems with nested mating designs for estimating epistatic variance components in testcrosses of maize

Christine Epinat , Agnes Bouchez , Alain A. Charcosset , A. Gallais

Maydica, 1996, 41, pp.287-293

Article dans une revue hal-02686996v1

L'identification de locus affectant des caractères quantitatifs (QTL) à l'aide de marqueurs génétiques est-elle justifiée pour la sélection ?

Alain A. Charcosset

Sélectionneur Français, 1996, 46, pp.35-45

Article dans une revue hal-02684493v1

Estimation of the contribution of quantitative trait loci (QTL) to the variance of a quantitative trait by means of genetic markers

Alain A. Charcosset , A. Gallais

TAG Theoretical and Applied Genetics, 1996, 93, pp.1193-1201

Article dans une revue hal-02684444v1

Organization of RFLP diversity among inbred lines of maize representing the most significant heterotic groups

Pierre Dubreuil , P. Dufour , E. Krejci , Mathilde M. Causse , D. de Vienne et al.

Crop Science, 1996, 36 (3), pp.790-799

Article dans une revue hal-02687395v1

Molecular markers and protein quantities as genetic descriptors in maize. II. Prediction of performance of hybrids for forage traits

Judith Burstin , Alain A. Charcosset , Yves Y. Barrière , D. de Vienne , C. Darmerval

Plant Breeding, 1995, 114, pp.427-433

Article dans une revue hal-02702703v1

Relationship between genetic markers and morphological traits in a maize inbred lines collection

A. Bar-Hen , Alain A. Charcosset , Mireille Bourgoin , J. Guiard

Euphytica, 1995, 84, pp.145-154

Article dans une revue hal-02710527v1

Genetic dissection of the relationship between carbon metabolism and early growth in maize, with emphasis on key-enzyme loci

Mathilde M. Causse , J.P. Rocher , Amelia Henry , Alain A. Charcosset , J.L. Prioul et al.

Molecular Breeding, 1995, 1 (3), pp.259-272

Article dans une revue hal-02704624v1

Investigation of the effect of genetic background on QTL expression using three connected RIL populations

Alain A. Charcosset , Mathilde M. Causse , A. Gallais

Maize Genetics Cooperation Newsletter, 1994, 68, pp.44

Article dans une revue hal-02703876v1

The effect of population structure on the relationship between heterosis and heterozygosity at marker loci

Alain A. Charcosset , L. Essioux

TAG Theoretical and Applied Genetics, 1994, 89 (2-3), pp.336-343

Article dans une revue hal-02701885v1

A composite map of expressed sequences, based on four individual maps

Mathilde M. Causse , C. Damerval , Aurélie Maurice , Alain A. Charcosset , Sylvain Santoni et al.

Maize Genetics Cooperation Newsletter, 1994, 68, pp.42-44

Article dans une revue hal-02709431v1
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Methodes mathematiques pour l'etude des genes controlant des caracteres quantitatifs

Bruno B. Goffinet , Jacques Beckmann , Didier Boichard , Mathilde M. Causse , Alain A. Charcosset et al.

Genetics Selection Evolution, 1994, 26 (suppl. 1), pp.9s-20s

Article dans une revue hal-02712662v1

Utilisation des techniques de marquage génétique pour l'analyse de la variabilité génétique et la prédiction du phénomène d'hétérosis

Alain A. Charcosset , Pierre Dubreuil , L. Essioux , A. Gallais

Sélectionneur Français, 1994, 44, pp.3-13

Article dans une revue hal-02701953v1
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Marquage et expression du genome chez le mais

Dominique de Vienne , J.M. Josse , Aurélie Maurice , Mathilde M. Causse , Agnès Leonardi et al.

Genetics Selection Evolution, 1994, 26 (suppl. 1), pp.21s-34s

Article dans une revue hal-02716205v1
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Modelling interaction from top-cross design data and prediction of F1 hybrid value

Alain A. Charcosset , J.B. Denis , M. Lefort-Buson , A. Gallais

Agronomie, 1993, 13 (7), pp.597-608

Article dans une revue hal-02705574v1

Relationship between heterosis and heterozygosity at marker loci : a theoretical computation

Alain A. Charcosset , M. Lefort-Buson , A. Gallais

TAG Theoretical and Applied Genetics, 1991, 81, pp.571-575

Article dans une revue hal-02715163v1

Genetic variability among populations of maize germplasm.1 : comparative analysis of top cross values and per se values of populations

Vincent Lavergne , M. Lefort-Buson , J.J. Daudin , Alain A. Charcosset , J.P. Sampoux et al.

Maydica, 1991, 36, pp.227-236

Article dans une revue hal-02709324v1

Genetic variability among populations of maize germplasm. 2. Enzymatic polymorphism and its relationship to quantitative trait diversity

M. Lefort-Buson , Vincent Lavergne , J.J. Daudin , Alain A. Charcosset , J.P. Sampoux et al.

Maydica, 1991, 36 (3), pp.237-246

Article dans une revue hal-02708959v1

De nouvelles perspectives pour l'analyse genetique des caracteres quantitatifs. 1 : a la recherche des locus importants

M. Lefort-Buson , F. Rodolphe , Alain A. Charcosset

Biofutur, 1990, 6, pp.30-37

Article dans une revue hal-02707596v1

Use of top-cross designs for predicting performance of maize single cross hybrids

Alain A. Charcosset , M. Lefort-Buson , A. Gallais

Maydica, 1990, 35, pp.23-27

Article dans une revue hal-02703788v1

De nouvelles perspectives pour l'analyse genetique des caracteres quantitatifs. 2 : la selection assistee par marqueurs

M. Lefort-Buson , F. Rodolphe , Alain A. Charcosset

Biofutur, 1990, 7-8, pp.42-47

Article dans une revue hal-02713223v1

Charaterization of maize landraces to identify source of diversity

Stephane Nicolas , Sarah Ben-Sadoun , Mariangela Arca , Galaretto Agustin Oscar , Mary-Huard Tristan et al.

26. EUCARPIA Maize and Sorghum Conference, Silvio Salvi; Francesco Camerlengo; Elisabetta Frascaroli; Marco Maccaferri; Cristian Forestan; Roberto Tuberosa, Jun 2025, Bologna, Italy

Communication dans un congrès hal-05302662v1

A Composite Hypothesis Testing Approach to Detect Pleiotropic Genomic Regions

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard

Eucarpia Biometrics in Plant Breeding 2025, Sep 2025, Edimbourg (GB), United Kingdom

Communication dans un congrès hal-05292851v1

Predicting seed composition and agronomic traits in maize genetic resources using phenomic selection based on near-infrared spectra

Stéphane D Nicolas , Sarah Ben-Sadoun , Renaud Rincent , Moreau Laurence , Alain Charcosset et al.

Joint PRO-GRACE/EMPHASIS policy symposium and workshop about plant genetic resources and phenotyping, Euroseeds, Jun 2024, Brussels, Belgium

Communication dans un congrès hal-04807968v1

Exploring European maize genetic resources for adaptation using high-throughout genotyping, genomic prediction and landscape genomics

Galaretto Agustin Oscar , Carlotta Balconi , Rosa Ana Malvar , Rita Redaelli , Violeta Andjelkovic et al.

22. EUCARPIA General Congress, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Aug 2024, Leizpig, Germany

Communication dans un congrès hal-04807689v1

Complementing genomics with platform omics help decipher the genetic architecture of in-field productivity in the presence of genotype by Environment interactions.

Baber Ali , Stephane Nicolas , Melisande Blein-Nicolas , Tristan Mary-Huard , Alain Charcosset et al.

3rd GxExM Symposium, Oct 2024, Wageningen, Netherlands

Communication dans un congrès hal-05201495v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto et al.

Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France

Communication dans un congrès hal-04225361v1

Genomic selection and Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stephane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Tristan Mary-Huard et al.

2. Colloque INRAE Genomics, INRAE Genomics, Nov 2023, Bordeaux, France

Communication dans un congrès hal-04808004v1

Proteomics-based systems approach of maize response to water deficit

Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas et al.

5. INPPO International Plant Proteomics Organization, May 2023, Thessaloniki, Greece

Communication dans un congrès hal-04302629v1

Improving genomic predictions with inbreeding and non-additive effects in two admixed maize hybrid populations in single and multi-environment contexts

Laurence Moreau , Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Alain Charcosset et al.

XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia

Communication dans un congrès hal-04458027v1

Développement d'une puce de génotypage haut débit des Insertions/Délétions chez le maïs : Application aux études d'associations pangénomiques

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Pirani et al.

Rencontre Science et Parteneriat Plant2Pro, Plant2Pro, Jun 2022, Paris, France

Communication dans un congrès hal-04807992v1

Caractériser la diversité génétique et application à l’étude de caractères

Stephane Nicolas , Mariagela Arca , Yacine Diaw , Antoine Roux , Romane Guilbaud et al.

1. Carrefour de la sélection du Maïs, Pro Maïs; INRAE, Nov 2022, Montpellier, France

Communication dans un congrès hal-04808039v1

Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Piranni et al.

XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding, May 2022, Belgrade, Serbia

Communication dans un congrès hal-04225603v1
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Integrated acclimation responses of maize root hydraulic architecture to water deficit

Protto Virginia , Bauget Fabrice , Rishmawi Louai , Tournaire-Roux Colette , Boursiac Yann et al.

EMBO Workshop - Molecular responses of plants facing climate change, Jun 2022, Montpellier, France

Communication dans un congrès hal-04010083v1

Studying G×E to dissect plant responses to environmental changes: integration of methods and data

Emilie J Millet , Diana Pérez-Valencia , María Rodríguez-Álvarez , Martin Boer , Andreas Hund et al.

18. Eucarpia Biometrics in Plant Breeding Conference, Hans-Peter Piepho; Laurence Moreau; Tristan Mary-Huard, Sep 2022, Gif-sur-Yvette, France

Communication dans un congrès hal-04154352v1

Advances in maize genetic resources characterisation and use

Antoine Allier , Simon Rio , Mariangela Arca , Laurence Moreau , Simon Teyssèdre et al.

Frontiers of Science and Technology in Crop Breeding and Production, MRIZP, Jun 2021, Belgrade, Serbia

Communication dans un congrès hal-04463167v1

A systems approach of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.

AMAIZING Final Conference, Sep 2021, Online, France

Communication dans un congrès hal-03879824v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker et al.

Journée SPS-CLAND, Sep 2021, Online, France

Communication dans un congrès hal-03879816v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro et al.

Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France

Communication dans un congrès hal-03879809v1

Des modèles pour répondre à quels besoins de R&D ? Les besoins du généticien

Jacques Le Gouis , Renaud Rincent , Alain Charcosset

Animation scientifique GIS-BV : Modèle de culture et autres modèles prédictifs pour la R&D en biologie végétale, Jun 2020, Paris, France

Communication dans un congrès hal-02917480v1

Levier génétique et stress abiotiques : principaux acquis et perspectives des projets nationaux BreedWheat (blé) et Amaizing (maïs)

Jacques Le Gouis , Alain Charcosset

Phloème 2020 : biennales de l’innovation céréalière, Arvalis - Institut du Végétal, Jan 2020, Paris, France

Communication dans un congrès hal-02917466v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom

Communication dans un congrès hal-03879843v1

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.

Journée SFEAP-SFSM, Apr 2019, Paris, France

Communication dans un congrès hal-03879865v1

Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stéphane Nicolas , Sandra Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.

24. Eucarpia Maize and Sorghum Conference, Oct 2019, Freising, Germany

Communication dans un congrès hal-03368737v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France

Communication dans un congrès hal-03368726v1

Genomic prediction in early stages of a maize breeding program: comparison of testcross and factorial design

Laurence Moreau , Adama Innocent Seye , Héloïse Giraud , Alizarine Lorenzi , Cyril Bauland et al.

XXIVth Eucarpia Maize and Sorghum conference, TUM, Oct 2019, Freising, Germany

Communication dans un congrès hal-04458192v1
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Dissecting G×E and QTL×E of maize yield in contrasting scenarios of light, heat and water deficit

Emilie J. Millet , Willem Kruijer , Santiago Alvarez Prado , Llorenç Cabrera-Bosquet , Aude Coupel-Ledru et al.

24. Eucarpia Maize and Sorghum Conference, TUM School of Life Sciences Weihenstephan, Oct 2019, Freising, Germany

Communication dans un congrès hal-04154261v1

Systems genetics of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

Symposium GisBV, Oct 2019, Paris, France

Communication dans un congrès hal-03879857v1

Contribution des Insertion/Délétions à la variations des caractères, l’adaptation et aux performances hybrides au moyen d’une puce de génotypage haut débit

Clément Mabire , Jorge Duarte , Johann Joets , Julie B Fiévet , Romane Guilbaud et al.

Colloque GIS-BV, Jul 2019, Paris, France

Communication dans un congrès hal-02787704v1

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stephane S. Nicolas , Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.

European maize meeting, May 2019, Montpellier, France

Communication dans un congrès hal-02788231v1
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Regulation of aquaporin expression in maize: proximal and distal eQTLs

Laurie C Maistriaux , Linda Jeanguenin , Santiago Alvarez Prado , Stephane S. Nicolas , Claude Welcker et al.

60. Maize Genetics Conference, Mar 2018, Saint-Malo, France

Communication dans un congrès hal-02737313v1

Revisiting hybrid breeding designs using genomic predictions calibrated on factorials between segregating families: a simulation study

Adama Innocent Seye , Cyril Bauland , Alain Charcosset , Laurence Moreau

XVII Eucarpia biometrics in plant breeding, Sep 2018, Ghent, Belgium

Communication dans un congrès hal-04458147v1

Twenty years of divergent selection for flowering time from maize inbred lines

Christine Dillmann , Adrienne Ressayre , Elodie Marchadier , Alain Charcosset , Inoussa Sanané et al.

60th Annual Maize Genetics Conference, MaizeGDB.org, Mar 2018, Saint Malo (FR), France

Communication dans un congrès hal-04458116v1

Deciphering the interest of integrating PAV genomic information in genetic analysis by investigating the extent of linkage disequilibrium

Clément Mabire , Jorge Duarte , Delphine Madur , Valerie Combes , Johann Joets et al.

Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jun 2018, Rennes, France

Communication dans un congrès hal-02786354v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany

Communication dans un congrès hal-02785295v1

Heterosis in maize : intermated recombinant inbred lines and their immortalized F2 reveal QTLs with dominant effects but no overdominance

Julie Fievet , Sarah Ben Sadoun , Tristan Mary , Stephane Nicolas , Matthieu Falque et al.

59. Maize Genetics Conference, Mar 2017, Saint-Louis, United States

Communication dans un congrès hal-01569899v1

GWAS for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker et al.

Journées du Protéome Vert, Mar 2017, Paris, France

Communication dans un congrès hal-03879954v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier et al.

1. German-French Maize Breeders School, May 2017, Hohenheim, Germany

Communication dans un congrès hal-02786301v1

Genome-wide association study between 60 000 Present/Absent Variants and 29 agronomic traits using a new high throughput genotyping array

Clément Mabire , Jorge Duarte , Jean-Philippe Pichon , Johann Joets , Aude Darracq et al.

Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jul 2016, Paris, France

Communication dans un congrès hal-02795575v1

Optimization of the calibration set in genomic selection

Renaud Rincent , Alain Charcosset , Laurence Moreau

IUFRO international Conference Genomics and forest tree Genetics, May 2016, Arcachon, France

Communication dans un congrès hal-03332466v1

Association mapping for transition to autotrophic growth under chilling conditions in maize

Christophe Clipet , J.F. Hû , Renaud Rincent , Sandrine Negro , Stephane Nicolas et al.

Eucarpia 2016. Plant Breeding: the Art of Bringing Science to Life, Aug 2016, Zürich, Switzerland

Communication dans un congrès hal-01603576v1

A new algorithm for GWAS panel optimization, applications in plant genetics

Tristan Mary-Huard , Renaud Rincent , Alain Charcosset , Laurence Moreau

XXVIII. International Biometric Conference (IBC 2016), Dec 2017, Victoria, Canada

Communication dans un congrès hal-02739985v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland et al.

23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France

Communication dans un congrès hal-02799117v1
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Genetic variability of the sensitivity of grain number to drought and high temperature in maize

Emilie Millet , Sandra Silvia Negro , Willem Kruijer , Stephane S. Nicolas , Fred van Eeuwijk et al.

Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France

Communication dans un congrès hal-02740735v1

Effect of structuration and relatedness on power in Genome Wide Association Studies

Renaud Rincent , Laurence Moreau , Tristan Mary-Huard , Alain Charcosset

23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Jun 2015, Montpellier, France

Communication dans un congrès hal-02795514v1
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Relatedness distribution estimation between individuals in multi-population panels

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard

43rd European Mathematical Genetics Meeting (EMGM), Apr 2015, Brest, France. pp.1

Communication dans un congrès hal-01197652v1

Ongoing activities within the project DIVERZEATY - Genetic diversity of Serbian maize local landraces and inbred lines

Sanja Mikić , Brigitte Gouesnard , Violeta Andelkovic , Stanisavljević Dušan , Anne Zanetto et al.

23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France

Communication dans un congrès hal-02739392v1

BioMercator 4 : A complete framework to integrate QTL, meta-QTL, and genome annotation.

Yannick de Oliveira , Olivier Sosnowski , Alain Charcosset , Johann Joets

European Conference on Computational Biology 2014, Sep 2014, Strasbourg, France

Communication dans un congrès hal-02417526v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.

Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France

Communication dans un congrès hal-01268379v1

Genetic architecture of European maize: multiparental QTL mapping and insights into heterosis

Amandine Lariepe , Laurence Moreau , Julie Fievet , Brigitte Mangin , Sylvain Jasson et al.

Meeting of working Group Medicago sativa, Jan 2012, San Diego, United States

Communication dans un congrès hal-01569916v1

Genetic architecture of European maize: multiparental QTL mapping and insights into heterosis

Amandine Lariepe , Laurence Moreau , Julie Fievet , Brigitte Mangin , Sylvain Jasson et al.

54. Maize Genetics Conference, Mar 2012, Portland, United States

Communication dans un congrès hal-01569900v1

Overview of QTL detection in plants and tests for synergistic epistatic interactions

Jean-Luc J.-L. Jannink , Laurence L. Moreau , Gilles Charmet , Alain A. Charcosset

3. International Conference of Quantitative Genetics, Aug 2007, Hangzhou, China

Communication dans un congrès hal-00964414v1
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Etude de la diversité génétique du maïs en Europe : analyse d'ADN ancien à partir d'échantillons d'herbier et confrontation avec l'analyse moléculaire à grande échelle de collections de populations

Brigitte Gouesnard , Monique Chastanet , Christine Tollon-Cordet , Pierre Dubreuil , Armand Boyat et al.

Un dialogue pour la diversité génétique, 2004, Lyon, France. pp.345-356

Communication dans un congrès halshs-00566286v1

Heterosis in maize investigated using connected RIL populations

Alain A. Charcosset , Brigitte B. Mangin , L. Moreau , L. Combes , M.F. Jourjon et al.

11. Meeting of the Eucarpia section biometrics in plant breeding, Aug 2000, Paris, France

Communication dans un congrès hal-02762934v1

Au delà des QTLs : deux approches d'utilisation des marqueurs en sélection

Alain A. Charcosset , Frederic F. Hospital , L. Moreau , Agnes Bouchez , Aurélie Maurice et al.

Séminaire du groupe de travail "Génomes végétaux", Apr 1997, Méribel-les-Allues, France

Communication dans un congrès hal-02765840v1

Best linear unbiased estimator of the molecular genetic distance between inbred lines

C. Dillmann , Alain A. Charcosset , Bruno Goffinet , J.S.C. Smith

10. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, May 1997, Poznan, Poland

Communication dans un congrès hal-02765804v1

Comparison of sever al approaches for predicting maize hybrid performance using marker data

J.B. Denis , Alain A. Charcosset , B. Bonnisseau , O. Touchebeuf , Judith Burstin et al.

10. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, May 1997, Poznan, Poland

Communication dans un congrès hal-02771638v1

Bases génétiques et physiologiques de l'efficacité d'utilisation de la fumure azotée chez le maïs

P. Bertin , Alain A. Charcosset , A. Gallais

Colloque AGPM, 1996, France

Communication dans un congrès hal-02764620v1

Construction de génotypes assistée par marqueurs chez le maïs. Poster

A. Gallais , Aurélie Maurice , Agnes Bouchez , Alain A. Charcosset , Mathilde M. Causse et al.

Séminaire, Oct 1996, Toulouse, France

Communication dans un congrès hal-02765460v1

Utilisation des techniques de marquage génétique pour l'analyse de la variabilité génétique et la prédiction du phénomène d'hétérosis

Alain A. Charcosset , Pierre Dubreuil , L. Essioux , A. Gallais

Journée ASF (Association des sélectionneurs français), Feb 1992, France

Communication dans un congrès hal-02846126v1

Structuration of genetic variability revealed by RFLPs among a set of inbred lines of maize (Zea mays L.) including the most important heterotic groups for modern hybrid maize seed industry

Pierre Dubreuil , P. Dufour , E. Krejci , Mathilde M. Causse , Sylvain Santoni et al.

Genetic resources section meeting of Eucarpia, Mar 1994, Clermont-Ferrand, France

Communication dans un congrès hal-02775312v1

Efficiency of marker-assisted selection

A. Gallais , Alain A. Charcosset

9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands

Communication dans un congrès hal-02773324v1

Investigation into the effect of genetic background on QTL expression using three connected maize recombinant inbred lines (RIL) populations

Alain A. Charcosset , Mathilde M. Causse , L. Moreau , A. Gallais

9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands

Communication dans un congrès hal-02773329v1
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Methodes mathematiques pour l'etude des genes controlant des caracteres quantitatifs

Bruno B. Goffinet , Jacques Beckmann , Didier Boichard , Mathilde M. Causse , Alain A. Charcosset et al.

Colloque BRG/INRA. Ressources génétiques animales et végétales. Méthodologies d'étude et de gestion, Sep 1993, Montpellier, France

Communication dans un congrès hal-02848407v1
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Marquage et expression du genome chez le mais

Dominique de Vienne , J.M. Josse , Aurélie Maurice , Mathilde M. Causse , Agnès Leonardi et al.

Colloque BRG/INRA. Ressources génétiques animales et végétales. Méthodologie d'étude et de gestion, Sep 1993, Montpellier, France

Communication dans un congrès hal-02852369v1

Relationship between molecular and morphological distances in a maize inbred lines collection. Application for breeders'rights protection

A. Bar-Hen , Alain A. Charcosset

9. Meeting of the EUCARPIA, Jul 1994, Wageningen, Netherlands

Communication dans un congrès hal-02773378v1

Relationship between molecular and morphological distances in a maize inbred lines collection. Application for breeders'rights protection

A. Bar-Hen , Alain A. Charcosset

9. Meeting of the EUCARPIA section biometrics in plant breeding, Jul 1994, Wageningen, Netherlands

Communication dans un congrès hal-02773330v1

Influence du fond génétique sur l'expression de QTLs de précocité chez le maïs

Alain A. Charcosset , Mathilde M. Causse , Sylvain Santoni

Réunion du groupe de travail marqueurs moléculaires chez les végétaux, Mar 1993, Meribel, France

Communication dans un congrès hal-02773596v1

Un exemple de gestion des ressources genetiques en vue de la selection

A. Gallais , Henri Duval , Pauline Garnier‐géré , Alain A. Charcosset

Colloque international en hommage a Jean Pernes, Jan 1992, Paris, France

Communication dans un congrès hal-02774046v1

Prediction of heterosis

Alain A. Charcosset

13. EUCARPIA Congress, Jul 1992, Angers, France

Communication dans un congrès hal-02775556v1

Marquage moleculaire et amelioration des plantes

Alain A. Charcosset

Seminaire international INRA-ICARDA, Nov 1991, Montpellier, France

Communication dans un congrès hal-02772682v1

Synthese

Alain A. Charcosset , Jean Michel J. M. Elsen , Brigitte B. Mangin

Meribel 91. Seminaire du Departement de Genetique et d'Amelioration des Plantes, Mar 1991, Meribel, France

Communication dans un congrès hal-02773436v1

Place des marqueurs dans une strategie de prediction de la valeur d'hybrides F1

Alain A. Charcosset

Meribel 91. Seminaire du Departement de Genetique et d'Amelioration des Plantes, Mar 1991, Meribel, France

Communication dans un congrès hal-02773305v1

Performance prediction of maize single cross hybrids

Alain A. Charcosset , J.B. Denis , M. Lefort-Buson

15. Conference, Jun 1990, Budapest, Hungary

Communication dans un congrès hal-02778025v1

Prediction de l'heterosis a partir de plans de croisements top-cros : interet de la distance de Hanson et Casas

Alain A. Charcosset , M. Lefort-Buson , A. Gallais

Meribel 88, Mar 1988, Meribel, France

Communication dans un congrès hal-02783020v1
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Reintroducing French High-Protein Landrace Maize Populations to Support Autonomy in Brittany's Pig Farming Sector

Cyril Bauland , Bernard Gesret , Dominique Kermarrec , Alain Charcosset , Brigitte Gouesnard et al.

Scientific Conference on Breeding to meet environmental and societal challenges, May 2025, Coimbra (PT), Portugal. , EUCARPIA Scientific Conference on Breeding to meet environmental and societal challenges, May 26-29, 2025, Abstract e-Book, pp.94, 2025

Poster de conférence hal-05090453v1
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Mining Allelic diversity of maize landraces for abiotic and biotic stresses

Nicolas Stéphane D. , Balconi Carlotta , Ana Ana Butron , Chaumont François , Gouesnard Brigitte et al.

26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy

Poster de conférence hal-05302651v1
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ÉVALUATION DU COMPORTEMENT DE 50 POPULATIONS FERMIÈRES DE MAIS RICHES EN PROTÉINES EN CONDITIONS D’AGRICULTURE BIOLOGIQUE DANS LE NORD FINISTÈRE (Projet ABIM)

Jean-Eric Chauvin , Nathalie Moutier , Dominique Kermarrec , Bernard Gesret , Cyril Bauland et al.

1. Journée de la Recherche Bio Bretonne, Nov 2025, Loudéac, France. ⟨10.18167/infrastructure/00007⟩

Poster de conférence hal-05337456v1
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Predicting adaptation of maize landraces from genebanks by combining DNA-pool genotyping, genomic prediction and genomic offset

Oscar Galaretto Agustin , Ana Malvar Rosa , Brigitte Gouesnard , Carlotta Balconi , Delphine Madur, et al.

26. EUCARPIA Maize and Sorghum Conference, Jun 2025, Bologna, Italy

Poster de conférence hal-05302702v1
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Genomic predictions and Genome-wide association studies on DNA pools to characterize traditional maize landraces and identify genomic regions associated with agronomic traits and environmental adaptation

Sarah Ben-Sadoun , Agustin Oscar Galaretto , Antoine Roux , Brigitte Gouesnard , Alain Charcosset et al.

7. International Conference of Quantitative Genetics (ICQG7), Jul 2024, Vienna, Austria.

Poster de conférence hal-04807728v1

Natural variation in maize root hydraulic architecture may offer new insights into plant drought responses

Oh Jeonghwa , Louai Rishmawi , Tournaire-Roux Colette , Cyril Bauland , Laura Gallo et al.

66. Annual Maize Genetics Meeting, Feb 2024, Raleigh, United States.

Poster de conférence hal-04519703v1

Genomic prediction and landscape genomics in a large maize landraces collection using high-throughput pool genotyping identifies promising sources of diversity for prebreeding

Agustin O. Galaretto , Brigitte Gouesnard , Delphine Madur , Sarah Ben-Sadoun , Sarah Hearne et al.

Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France

Poster de conférence hal-04225415v1
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A combination of quantitative trait locus mapping and transcriptome analysis reveals a cluster of three MYC2-and jasmonic acid-dependent genes associated with long-term chilling tolerance in maize

Catalina Duran Garzon , Claire Chemin , Andrea Rau , Benoît Decaux , Hélène Sellier-Richard et al.

65th Annual Maize Genetics Meeting, Mar 2023, Saint-Louis (Missouri), United States. , 2023

Poster de conférence hal-05161618v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , J Oh , Xuelian Li , Laura Gallo et al.

10. International Symposium on Root Development, May 2023, Ghent, Belgium.

Poster de conférence hal-04466536v1
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Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau et al.

Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States

Poster de conférence hal-03541379v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.

Congrès Analytics 2022, Sep 2022, Nantes, France.

Poster de conférence hal-03879730v1

Genomic prediction across two breeding cycles in maize silage using a factorial approach

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.

XVIII Eucarpia biometrics in plant breeding conference, Sep 2022, GIF-SUR-YVETTE, France

Poster de conférence hal-04458114v1
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Improving genomic predictions with inbreeding and non-additive effects using two hybrid admixed populations in maize

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.

Eucarpia Biometrics, Sep 2022, Gif-sur-Yvette, France. 2022

Poster de conférence hal-04132668v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.

ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online, United States.

Poster de conférence hal-04167184v1

De novo assembling 19 maize inbred lines of importance for European breeding

C. Vitte , C. Eché , C. Lampietro , E. Denis , C. Birbes et al.

63rd Annual Maize Genetics Conference, Mar 2021, Visio conference, United States

Poster de conférence hal-04478806v1
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De novo assembling 19 maize inbred lines of the European germplasm

Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis et al.

63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States

Poster de conférence hal-03539396v1

Genetic variability of the expression of plasma membrane aquaporins in maize leaves: from eQTLs to characterization of cis-and trans-acting regulatory factors

Laurie Maistriaux , Maxime J. Laurent , Estelle Teirlinckx , Linda Jeanguenin , Santiago Alvarez Prado et al.

63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States

Poster de conférence hal-03368769v1
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Structural variants detection and de novo genome assembly of a Maize line

Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau et al.

SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands

Poster de conférence hal-03541316v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.

63. Annual Maize Genetics Meeting, Mar 2021, Online, United States.

Poster de conférence hal-03368767v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.

63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States

Poster de conférence hal-03368764v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.

PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020

Poster de conférence hal-02947690v1

Responses to selection for adaptation to temperate conditions in tropical drought tolerant maize production

Brigitte Gouesnard , Anne Zanetto , Carine Palaffre , Romain Chapuis , Mariangela Arca et al.

3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources

Poster de conférence hal-02736402v1

Expanding european flint maize panels for genome-wide association and genomic selection studies

Alain Charcosset , Stephane S. Nicolas , Delphine Madur , Valerie Combes , Sophie Pin et al.

61. Annual maize genetics conference, Mar 2019, St Louis, United States. , 335 p., 2019, 61st Annual Maize Genetics Conference Program and Abstracts

Poster de conférence hal-02735057v1
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Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France.

Poster de conférence hal-03879878v1

Diversity of maize landraces from south-west of France: origin and morphological differentiation analyzes

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Jacques David et al.

3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources

Poster de conférence hal-02735058v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , A.E. Melchinger et al.

3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources

Poster de conférence hal-02734558v1
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The Zea French Biological Resource Centre: conservation and utilization of maize genetic resources in France

Anne Zanetto , Carine Palaffre , Cyril Bauland , Jean Beigbeder , Stéphanie Castel et al.

60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018

Poster de conférence hal-02738291v1

Diversity of maize landraces from south-west of France: origin and morphological differentiation analyzes

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Jacques David et al.

60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts

Poster de conférence hal-02733632v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.

60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts

Poster de conférence hal-02734953v1
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Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data

Johann J. Joets , Sylvie Coursol , Olivier Turc , Llorenç Cabrera-Bosquet , Marie-Laure Magniette Martin-Magniette et al.

First International Plant Systems Biology meeting, Sep 2018, Roscoff, France

Poster de conférence hal-02955192v1

Efficient ReML inference in the Variance Component Mixed Models using Min-Max procedures

Tristan Mary-Huard , Fabien Laporte , Alain Charcosset

17. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2018

Poster de conférence hal-02736285v1

Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

A. Darracq , Clémentine Vitte , S. Nicolas , J. Duarte , J.P. Pichon et al.

60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France

Poster de conférence hal-04478798v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

60th Annual Maize Genetics Conference, Mar 2018, Paris, France

Poster de conférence hal-03879934v1
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Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data

Johann Joets , Sylvie Coursol , Olivier Turc , Llorenç Cabrera Bosquet , Marie-Laure Martin-Magniette et al.

60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018

Poster de conférence hal-02738241v1

AMAIZING, a project on Maize Integrative Genomics supported by the French program “Investments for the Future”.

A. Charcosset , J. Joets , Clémentine Vitte , L. Moreau , C. Giauffret et al.

60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France

Poster de conférence hal-04478799v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts

Poster de conférence hal-02733631v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.

60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts

Poster de conférence hal-02734955v1

Identifiability and Inference of Relatedness between Individuals

Tristan Mary-Huard , Alain Charcosset , Fabien Laporte

11. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2015

Poster de conférence hal-02740107v1
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Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.

Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France.

Poster de conférence hal-03879943v1
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Exploring QTLxE in a network of fields: identification of QTLs associated with scenarios of heat and drought for predicting yields in future climates

Emilie Millet , W. Kruijer , Stephane Nicolas , Aude Coupel-Ledru , Alain Charcosset et al.

Interdrought V, Feb 2017, Hyderabad, India. 2017

Poster de conférence hal-01605102v1

Analysis and structuration of the genetic diversity of Pyrenean maize populations with a 50K SNP array by a bulk and an one individual plant approach

Yacine Diaw , Christine Tollon-Cordet , Anne Zanetto , Alain Charcosset , Brigitte Gouesnard

EUCARPIA Genetic Resources 2017 - Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. 2017

Poster de conférence hal-02785296v1

Diversity analysis within a collection of 1191 Flint collection using Genotyping By Sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.

4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany. , 2017

Poster de conférence hal-02789732v1
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BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

Yannick de Oliveira , Lydia Ait-Braham , Johann Joets , Clément Mabire , Sandra Negro et al.

5ième meeting annuel d’AMAIZING, Nov 2016, Paris, France

Poster de conférence hal-01404747v1

Comparison of High-Throughput Genotyping Technologies in Maize: Increase in number of regions detected in association genetics

Sandra Silvia Negro , Emilie Millet , W. Kruijer , Delphine Madur , Marie-Christine Le Paslier et al.

Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015

Poster de conférence hal-01535330v1
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Thaliadb : A database dedicated to association genetics in plants

Guy-Ross Assoumou-Ella , Yannick de Oliveira , Johann Joets , Alain Charcosset

Journées Ouvertes en Biologie, Informatique & Mathématiques 2015, Jul 2015, Clermont-Ferrand, France

Poster de conférence hal-02417610v1

Adaptation to temperate conditions of sub-tropical drought tolerant maize populations

Brigitte Gouesnard , Anne Zanetto , Mariangela Arca , Stephane S. Nicolas , Alain A. Charcosset et al.

Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015

Poster de conférence hal-02743412v1
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Thaliadb : A database dedicated to association genetic in plants

Yannick de Oliveira , Guy-Ross Assoumou-Ella , Alain Charcosset , Johann Joets

European Conference on Computational Biology 2014, Sep 2014, Strasbourg, France

Poster de conférence hal-02417594v1
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Thaliadb A database dedicated to association genetics in plants

Yannick de Oliveira , Julien Cornouiller , Guy-Ross Assoumou-Ella , Johann Joets , Alain Charcosset

Journées Ouvertes en Biologie, Informatique & Mathématiques 2012, Jul 2012, Rennes, France

Poster de conférence hal-02417582v1
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Journées Scientifiques du Département Sciences de la Vie et Santé - AgroParisTech

Carmen Bessa-Gomes , Anaïs Cazals , Blanche Collard , François Chiron , Matthieu Jules et al.

Journées Scientifiques du Département Sciences de la Vie et Santé - AgroParisTech, Apr 2024, Palaiseau, France. 2025

Proceedings/Recueil des communications hal-05339375v1
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Building a calibration set for genomic prediction, characteristics to be considered, and optimization approaches

Simon Rio , Alain Charcosset , Tristan Mary-Huard , Laurence Moreau , Renaud Rincent

Ahmadi Nourollah (ed.); Bartholomé Jérôme (ed.). Genomic prediction of complex traits: methods and protocols, 2467 (2467), Humana Press; Springer, pp.77-112, 2022, Methods in Molecular Biology, 978-1-0716-2204-9. ⟨10.1007/978-1-0716-2205-6_3⟩

Chapitre d'ouvrage hal-04343930v1
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Les mélanges de variétés ont contribué à l’expansion géographique mondiale d’une espèce cultivée, le maïs

Maud Tenaillon , Alain Charcosset

101 secrets de l’ADN, 2019

Chapitre d'ouvrage hal-02345700v1

OptiMAS: a decision support tool to conduct marker-assisted selection programs

Fabio Valente , Franck Gauthier , Nicolas Bardol , Guylaine Blanc , Johann J. Joets et al.

Crop Breeding, 1145, Humana Press Inc., 20 p., 2014, Methods in Molecular Biology, 978-1-4939-0446-4 978-1-4939-0445-7. ⟨10.1007/978-1-4939-0446-4_9⟩

Chapitre d'ouvrage hal-02796957v1
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L'histoire européenne du maïs revisitée à la lumière de la génétique : la contribution de la côte est de l'Amérique du Nord

Monique Chastanet , Alain Charcosset

TREMBLAY Roland (éd.). Les Iroquoiens du Saint-Laurent, peuple du maïs volume en anglais : The Saint Lawrence Iroquoians, Corn People, Musée d'Archéologie et d'Histoire de Montréal/Les Editions de l'Homme, p. 50-51 et 137, 2007

Chapitre d'ouvrage halshs-00687756v1

Le maïs et le blé, céréales modèles pour la recherche en biologie intégrative et son application à la sélection

Bertrand Hirel , Jacques Le Gouis , P. Perez , Matthieu Falque , Francis Quétier et al.

La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5

Chapitre d'ouvrage hal-02832017v1

Evolution moléculaire et validation de gènes candidats

Domenica Manicacci , Alain A. Charcosset

La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5

Chapitre d'ouvrage hal-02828064v1

Progress and prospects for marker-assisted selection

A. Gallais , Alain A. Charcosset , Isabelle I. Goldringer , Frederic F. Hospital , L. Moreau

Quantitative genetics and breeding methods: the way ahead, 96, INRA Editions, 2001, Colloques de l'INRA, 2-7380-0952-2

Chapitre d'ouvrage hal-02833774v1

A French cooperative programme for management and utilization of maize genetic resources.

A. Gallais , A. Barrière , A. Boyat , A. Charcosset , J. Dallard et al.

Broadening the Genetic Base of Crop Production, International Plant Genetic Resources Institute (IPGRI) Food and Agriculture Organization of the United Nations (FAO) CABI, pp.331-340, 2000, ⟨10.1079/9780851994116.0331⟩

Chapitre d'ouvrage hal-04300838v1

Intérêts des marqueurs en sélection

Alain A. Charcosset , A. Gallais

Les marqueurs moléculaires en génétique et biotechnologies végétales, INRA Editions, 1999

Chapitre d'ouvrage hal-02835772v1

Large-scale composite hypothesis testing for omics analyses.

Annaïg de Walsche , Franck Gauthier , Alain Charcosset , Tristan Mary-Huard

2024

Pré-publication, Document de travail hal-04508559v1

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

Alizarine Lorenzi , Cyril Bauland , Sophie Pin , Delphine Madur , Valérie Combes et al.

2023

Pré-publication, Document de travail hal-04351595v1
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metaGE: Investigating Genotype × Environment interactions through meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stephane Nicolas et al.

2024

Pré-publication, Document de travail hal-04507780v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stephane Nicolas , Delphine Madur et al.

2020

Pré-publication, Document de travail (preprint/prepublication) hal-02965051v1

Diversity patterns and selective sweeps in a Southeast European panel of maize inbred lines as combined with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.

2021

Pré-publication, Document de travail hal-03372006v1
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Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool

Mariangela Arca , Brigitte Gouesnard , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

2020

Pré-publication, Document de travail (preprint/prepublication) hal-02965049v1
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Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca

Mariangela Arca , Tristan Mary-Huard , Cyril Bauland , Brigitte Gouesnard , Aurélie Berard et al.

2020

Pré-publication, Document de travail (preprint/prepublication) hal-02965048v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: an application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02789968v1
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Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02788569v1
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Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02786986v1