Alexis Joly

196
Documents

Publications

Publications

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PlantAIM: A new baseline model integrating global attention and local features for enhanced plant disease identification

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Hervé Goëau , Pierre Bonnet et al.
Smart Agricultural Technology, 2025, 10, pp.100813. ⟨10.1016/j.atech.2025.100813⟩
Article dans une revue hal-05017656 v1
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Cooperative learning of Pl@ntNet's Artificial Intelligence algorithm: how does it work and how can we improve it?

Tanguy Lefort , Antoine Affouard , Benjamin Charlier , Jean-Christophe Lombardo , Mathias Chouet et al.
Methods in Ecology and Evolution, 2025, ⟨10.1111/2041-210X.14486⟩
Article dans une revue hal-04603038 v2

Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images

Vincent Espitalier , Jean-Christophe Lombardo , Hervé Goëau , Christophe Botella , Toke Thomas Høye et al.
Ecological Informatics, In press, pp.103129. ⟨10.1016/j.ecoinf.2025.103129⟩
Article dans une revue hal-05046527 v1

Seatizen Atlas: a collaborative dataset of underwater and aerial marine imagery

Matteo Contini , Victor Illien , Mohan Julien , Mervyn Ravitchandirane , Victor Russias et al.
Scientific Data , 2025, 12 (1), pp.67. ⟨10.1038/s41597-024-04267-z⟩
Article dans une revue hal-04918784 v1
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Predicting species distributions in the open ocean with convolutional neural networks

Gaétan Morand , Alexis Joly , Tristan Rouyer , Titouan Lorieul , Julien Barde
Peer Community Journal, 2024, 4, pp.e93. ⟨10.24072/pcjournal.471⟩
Article dans une revue hal-04754491 v1
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Peerannot: classification for crowdsourced image datasets with Python

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon
Article dans une revue hal-04202889 v1
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Optimal checkpointing for heterogeneous chains: how to train deep neural networks with limited memory Optimal Re-Materialization Strategies for Heterogeneous Chains: How to Train Deep Neural Networks with Limited Memory

Olivier Beaumont , Lionel Eyraud-Dubois , Julien Herrmann , Alexis Joly , Alena Shilova
ACM Transactions on Mathematical Software, 2024, 50 (2), pp.1-38. ⟨10.1145/3648633⟩
Article dans une revue hal-02352969 v2

Identify ambiguous tasks combining crowdsourced labels by weighting Areas Under the Margin

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon
Transactions on Machine Learning Research Journal, 2024
Article dans une revue hal-03812716 v1
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Can we harmonize the monitoring of plants and pollinators?

Emmanuelle Porcher , Pierre Bonnet , Christian Damgaard , Pieter de Frenne , Nicolas Deguines et al.
New Phytologist, 2024, 244 (1), pp.39-42. ⟨10.1111/nph.20038⟩
Article dans une revue hal-04680061 v1

Beyond supervision: Harnessing self-supervised learning in unseen plant disease recognition

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Pierre Bonnet , Alexis Joly
Neurocomputing, 2024, 610, pp.128608. ⟨10.1016/j.neucom.2024.128608⟩
Article dans une revue hal-04815172 v1
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Detecting flowers on imagery with computer vision to improve continental scale grassland biodiversity surveying

Neija Elvekjaer , Laura Martínez-Sanchez , Pierre Bonnet , Alexis Joly , Maria Luisa Paracchini et al.
Ecological Solutions and Evidence, 2024, 5, ⟨10.1002/2688-8319.12324⟩
Article dans une revue hal-04593804 v1
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Mapping global orchid assemblages with deep learning provides novel conservation insights

Joaquim Estopinan , Maximilien Servajean , Pierre Bonnet , Alexis Joly , François Munoz
Ecological Informatics, 2024, 81, pp.102627. ⟨10.1016/j.ecoinf.2024.102627⟩
Article dans une revue hal-04581266 v1
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Revolutionizing Plant Pathogen Conservation: The Past, Present, and Future of AI in Preserving Natural Ecosystems

Sue Han Lee , Zhe Rui Liaw , Yu Hao Chai , Shien Lin Ng , Pierre Bonnet et al.
Biodiversity Information Science and Standards, 2024, 8, pp.e133055. ⟨10.3897/biss.8.133055⟩
Article dans une revue hal-04701227 v1
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A deep-learning framework for enhancing habitat identification based on species composition

César Leblanc , Pierre Bonnet , Maximilien Servajean , Milan Chytrý , Svetlana Aćić et al.
Applied Vegetation Science, 2024, 27 (3), pp.e12802. ⟨10.1111/avsc.12802⟩
Article dans une revue hal-04700157 v1
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Envisaging a global infrastructure to exploit the potential of digitised collections

Quentin Groom , Mathias Dillen , Wouter Addink , Arturo Ariño , Christian Bölling et al.
BDJ Open, 2023, 11, ⟨10.3897/BDJ.11.e109439⟩
Article dans une revue hal-03871553 v1
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Life Science Workflow Services (LifeSWS): motivations and architecture

Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso et al.
Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩
Article dans une revue lirmm-04173545 v1
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Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers

Shamprikta Mehreen , Hervé Goëau , Pierre Bonnet , Sophie Chau , Julien Champ et al.
Plant Phenomics, 2023, 5 (#0112), ⟨10.34133/plantphenomics.0112⟩
Article dans une revue hal-04322179 v1

GeoAI for Marine Ecosystem Monitoring: a Complete Workflow to Generate Maps from AI Model Predictions

Justine Talpaert Daudon , Matteo Contini , Isabel Urbina-Barreto , Brianna Elliott , François Guilhaumon et al.
ISPRS International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, 2023, XLVIII-4/W7-2023, pp.223-230. ⟨10.5194/isprs-archives-XLVIII-4-W7-2023-223-2023⟩
Article dans une revue hal-04204101 v1
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Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Mathias Chouet , Hugo Gresse et al.
Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩
Article dans une revue hal-04430929 v1
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Pl@ntNet Crops: merging citizen science observations and structured survey data to improve crop recognition for agri-food-environment applications

Marijn van Der Velde , Hervé Goëau , Pierre Bonnet , Raphaël d'Andrimont , Martin Yordanov et al.
Environmental Research Letters, 2023, 18 (2), pp.025005. ⟨10.1088/1748-9326/acadf3⟩
Article dans une revue hal-03965684 v1
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Modern Approaches to the Monitoring of Biоdiversity (MAMBO)

Toke Thomas Høye , Tom August , Mario V Balzan , Koos Biesmeijer , Pierre Bonnet et al.
Research Ideas and Outcomes, 2023, 9, pp.e116951. ⟨10.3897/rio.9.e116951⟩
Article dans une revue hal-04405026 v1
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Deep Species Distribution Modeling From Sentinel-2 Image Time-Series: A Global Scale Analysis on the Orchid Family

Joaquim Estopinan , Maximilien Servajean , Pierre Bonnet , François Munoz , Alexis Joly
Frontiers in Plant Science, 2022, 13, pp.839327. ⟨10.3389/fpls.2022.839327⟩
Article dans une revue hal-03693593 v1
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Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion

Christophe Botella , Pierre Bonnet , Cang Hui , Alexis Joly , David M. Richardson
Biology, 2022, 11 (9), pp.1293. ⟨10.3390/biology11091293⟩
Article dans une revue hal-03771760 v1
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Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest

Hervé Goëau , Titouan Lorieul , Patrick Heuret , Alexis Joly , Pierre Bonnet
Plants, 2022, 11 (4), pp.530-552. ⟨10.3390/plants11040530⟩
Article dans une revue hal-03601464 v1
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Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks?

Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz
Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.839279⟩
Article dans une revue hal-03695760 v1
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How Networks of Citizen Observatories Can Increase the Quality and Quantity of Citizen-Science-Generated Data Used to Monitor SDG Indicators

Sasha Woods , Maria Daskolia , Alexis Joly , Pierre Bonnet , Karen Soacha et al.
Sustainability, 2022, 14 (7), ⟨10.3390/su14074078⟩
Article dans une revue hal-03658842 v1
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AI-based Identification of Plant Photographs from Herbarium Specimens

Hervé Goëau , Pierre Bonnet , Alexis Joly
Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73751⟩
Article dans une revue hal-03338823 v1

Report on the 12th conference and labs of the evaluation forum (CLEF 2021)

K. Selçuk Candan , Guglielmo Faggioli , Nicola Ferro , Lorraine Goeuriot , Bogdan Ionescu et al.
Sigir Forum, 2021, 55 (2), pp.1-12. ⟨10.1145/3527546.3527564⟩
Article dans une revue hal-03869971 v1
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Customized e-floras: How to develop your own project on the Pl@ntNet platform

Antoine Affouard , Mathias Chouet , Jean-Christophe Lombardo , Hugo Gresse , Hervé Goëau et al.
Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73857⟩
Article dans une revue hal-03338811 v1
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Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩
Article dans une revue hal-03150701 v1
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Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment

Benjamin Deneu , Maximilien Servajean , Pierre Bonnet , Christophe Botella , François Munoz et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩
Article dans une revue hal-03220977 v1
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Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of Streptanthus tortuosus

Natalie Love , Pierre Bonnet , Hervé Goëau , Alexis Joly , Susan Mazer
Plants, 2021, 10 (11), pp.2471. ⟨10.3390/plants10112471⟩
Article dans une revue hal-03454183 v1

Identifying gaps in the photographic record of the vascular plant flora of the Americas

Nigel C. A. Pitman , Tomomi Suwa , Carmen Ulloa Ulloa , James Miller , James Solomon et al.
Nature Plants, 2021, 7, pp.1010-1014. ⟨10.1038/s41477-021-00974-2⟩
Article dans une revue hal-03312029 v1
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Pl@ntNet Services, a Contribution to the Monitoring and Sharing of Information on the World Flora

Pierre Bonnet , Julien Champ , Hervé Goëau , Fabian-Robert Stöter , Benjamin Deneu et al.
Biodiversity Information Science and Standards, 2020, 4, pp.e58933. ⟨10.3897/biss.4.58933⟩
Article dans une revue hal-02973673 v1
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A new fine‐grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction

Hervé Goëau , Adán Mora‐fallas , Julien Champ , Natalie Lauren Rossington Love , Susan Mazer et al.
Applications in Plant Sciences, 2020, 8 (6), pp.#e11368. ⟨10.1002/aps3.11368⟩
Article dans une revue hal-02894994 v1
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A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN

Charles C. Davis , Julien Champ , Daniel Park , Ian Breckheimer , Goia Lyra et al.
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.01129⟩
Article dans une revue hal-02909794 v1
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Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection

Christophe Botella , Alexis Joly , Pascal Monestiez , Pierre Bonnet , François Munoz
PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩
Article dans une revue hal-02639237 v1
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Instance segmentation for automated weeds and crops detection in farmlands

Adán Mora-Fallas , Hervé Goëau , Alexis Joly , Pierre Bonnet , Erick Mata-Montero
Revista Tecnología en Marcha, 2020, pp.13-17. ⟨10.18845/tm.v33i5.5069⟩
Article dans une revue hal-02989049 v1
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Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research

Katelin D. Pearson , Gil Nelson , Myla Aronson , Pierre Bonnet , Laura Brenskelle et al.
Bioscience, 2020, 70 (7), pp.610-620. ⟨10.1093/biosci/biaa044⟩
Article dans une revue hal-02573627 v1
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AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery

Tom August , Oliver Pescott , Alexis Joly , Pierre Bonnet
Patterns, 2020, 1 (7), pp.100116. ⟨10.1016/j.patter.2020.100116⟩
Article dans une revue hal-02989043 v1
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Contribution citoyenne au suivi de la flore d'un parc national français, un exemple remarquable à l'échelle du Parc national des Cévennes

Pierre Bonnet , Hervé Goëau , Frantz Hopkins , Errol Véla , Amandine Sahl et al.
Carnets Botaniques, 2020, 21, pp.1-9. ⟨10.34971/zaz0-n247⟩
Article dans une revue hal-02981760 v1
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New perspectives on plant disease characterization based on deep learning

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly
Computers and Electronics in Agriculture, 2020, 170, pp.105220. ⟨10.1016/j.compag.2020.105220⟩
Article dans une revue hal-02470280 v1
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Attention-Based Recurrent Neural Network for Plant Disease Classification

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.601250⟩
Article dans une revue hal-03064464 v1
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How citizen scientists contribute to monitor protected areas thanks to automatic plant identification tools

Pierre Bonnet , Alexis Joly , Jean-Michel Faton , Susan Brown , David Kimiti et al.
Ecological Solutions and Evidence, 2020, 1 (2), ⟨10.1002/2688-8319.12023⟩
Article dans une revue hal-02937618 v1
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Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots

Julien Champ , Adán Mora‐fallas , Hervé Goëau , Erick Mata‐montero , Pierre Bonnet et al.
Applications in Plant Sciences, 2020, 8 (7), pp.e11373. ⟨10.1002/aps3.11373⟩
Article dans une revue hal-02910844 v1
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Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

Titouan Lorieul , Katelin D. Pearson , Elizabeth R. Ellwood , Hervé Goëau , Jean‐francois Molino et al.
Applications in Plant Sciences, 2019, 7 (3), pp.e01233. ⟨10.1002/aps3.1233⟩
Article dans une revue hal-02137748 v1
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DZI: An Air Index for Spatial Queries in One-dimensional Channels

Kwangjin Park , Alexis Joly , Patrick Valduriez
Data and Knowledge Engineering, 2019, 124, pp.101748. ⟨10.1016/j.datak.2019.101748⟩
Article dans une revue lirmm-02386429 v1
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Au-delà de la collecte des données dans les projets de sciences citoyennes : ouvrir le champ de l’analyse et de l’interprétation des données aux citoyens.

Sylvie Blangy , Valentin Lhoste , Céline Arnal , Jennifer Carré , Anaïs Chapot et al.
Technologie et innovation, 2018, 18- 3 (Innovations citoyennes), ⟨10.21494/ISTE.OP.2018.0289⟩
Article dans une revue hal-01824900 v1
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Species distribution modeling based on the automated identification of citizen observations

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal P. Monestiez , François Munoz
Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩
Article dans une revue hal-01739481 v1
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Non-parametric Bayesian annotator combination

Maximilien Servajean , Romain Chailan , Alexis Joly
Information Sciences, 2018, 436-437, pp.131-145. ⟨10.1016/j.ins.2018.01.020⟩
Article dans une revue lirmm-01703020 v1
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Crowdsourcing Thousands of Specialized Labels: A Bayesian Active Training Approach

Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti
IEEE Transactions on Multimedia, 2017, 19 (6), pp.1376-1391. ⟨10.1109/TMM.2017.2653763⟩
Article dans une revue hal-01629149 v1
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Going deeper in the automated identification of Herbarium specimens

Jose Carranza-Rojas , Hervé Goëau , Pierre Bonnet , Erick Mata-Montero , Alexis Joly
BMC Evolutionary Biology, 2017, 17 (1), pp.181. ⟨10.1186/s12862-017-1014-z⟩
Article dans une revue hal-01580070 v1

Guest Editorial: Environmental Multimedia Retrieval

Stefanos Vrochidis , Kostas D. Karatzas , Ari Karppinen , Alexis Joly
Multimedia Tools and Applications, 2016, 75 (3), pp.1557-1562. ⟨10.1007/s11042-016-3256-y⟩
Article dans une revue hal-01373782 v1
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A look inside the Pl@ntNet experience

Alexis Joly , Pierre Bonnet , Hervé Goëau , Julien Barbe , Souheil Selmi et al.
Multimedia Systems, 2016, 22 (6), pp.751-766. ⟨10.1007/s00530-015-0462-9⟩
Article dans une revue hal-01182775 v1
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Categorizing plant images at the variety level: Did you say fine-grained?

Julien Champ , Titouan Lorieul , Pierre Bonnet , Najate Maghnaoui , Christophe Sereno et al.
Pattern Recognition Letters, 2016, 81, pp.71-79. ⟨10.1016/j.patrec.2016.05.022⟩
Article dans une revue lirmm-01348914 v1
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Plant identification: Man vs. Machine

Pierre Bonnet , Alexis Joly , Hervé Goëau , Julien Champ , Christel Vignau et al.
Multimedia Tools and Applications, 2016, LifeCLEF 2014 plant identification challenge, 75 (3), pp.1647-1665. ⟨10.1007/s11042-015-2607-4⟩
Article dans une revue hal-01182778 v1

Interactive plant identification based on social image data

Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Julien Barbe et al.
Ecological Informatics, 2014, 23, pp.22-34. ⟨10.1016/j.ecoinf.2013.07.006⟩
Article dans une revue hal-00908872 v2

Pl@ntNet, un réseau et des outils pour une recherche participative

Alexis Joly , Pierre Bonnet , Hervé Goëau
Interstices, 2014
Article dans une revue hal-01350266 v1

Object-based visual query suggestion

Amel Hamzaoui , Pierre Letessier , Alexis Joly , Olivier Buisson , Nozha Boujemaa
Multimedia Tools and Applications, 2014, Multimedia Tools and Applications, 68 (2), pp.429-454. ⟨10.1007/s11042-012-1340-5⟩
Article dans une revue hal-00806635 v1

BLasso for object categorization and retrieval: Towards interpretable visual models

Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa
Pattern Recognition, 2012, 45 (6), pp.2377-2389. ⟨10.1016/j.patcog.2011.11.022⟩
Article dans une revue istex hal-00739706 v1
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Content-based Copy Retrieval using Distortion-based Probabilistic Similarity Search

Alexis Joly , Olivier Buisson , Carl Frélicot
IEEE Transactions on Multimedia, 2008, ⟨10.1109/TMM.2006.886278⟩
Article dans une revue hal-02420864 v1
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Overview of BirdCLEF 2024: Acoustic Identification of Under-studied Bird Species in the Western Ghats

Stefan Kahl , Tom Denton , Holger Klinck , Vijay Ramesh , Viral Joshi et al.
CLEF 2024 Working Notes - 25. Conference and Labs of the Evaluation Forum, Sep 2024, Grenoble, France. pp.1948-1957
Communication dans un congrès hal-04719578 v1

Can Language Improve Visual Features For Distinguishing Unseen Plant Diseases?

Jerad Zherui Liaw , Abel Yu Hao Chai , Sue Han Lee , Pierre Bonnet , Alexis Joly
ICPR 2024 - 27. International Conference on Pattern Recognition, Dec 2024, Kolkata, India. pp.296-311, ⟨10.1007/978-3-031-78113-1_20⟩
Communication dans un congrès hal-04851648 v1

GeoPlant: Spatial Plant Species Prediction Dataset

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.
NeurIPS 2024 - 38th Annual Conference on Neural Information Processing Systems, Dec 2024, Vancouver, Canada
Communication dans un congrès hal-04852083 v1
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Overview of GeoLifeCLEF 2024: Species Composition Prediction with High Spatial Resolution at Continental Scale using Remote Sensing

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.
CLEF 2024 Working Notes - 25. Conference and Labs of the Evaluation Forum, Sep 2024, Grenoble, France. pp.1966-1977
Communication dans un congrès hal-04720817 v1
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Overview of LifeCLEF 2024 Teaser : Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.
ECIR 2024 - 46. European Conference on Information Retrieval, Mar 2024, Glasgow, United Kingdom. pp.19-27, ⟨10.1007/978-3-031-56072-9_3⟩
Communication dans un congrès hal-04667635 v1
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Overview of PlantCLEF 2024: multi-species plant identification in vegetation plot images

Hervé Goëau , Vincent Espitalier , Pierre Bonnet , Alexis Joly
CLEF 2024 Working Notes - 25. Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Petra Galuščáková; Alba García Seco de Herrera, Sep 2024, Grenoble, France. pp.1978-1988
Communication dans un congrès hal-04806900 v1
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Weighted majority vote using Shapley values in crowdsourcing

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon
CAp-RFIAP 2024 - Conférences jointes sur l'Apprentissage automatique et la Reconnaissance des Formes, l’Image, l’Apprentissage, la Perception, Jul 2024, Lille, France
Communication dans un congrès hal-04573727 v1
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Overview of LifeCLEF 2024: Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.
CLEF 2024 - 15th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2024, Grenoble, France. pp.183-207, ⟨10.1007/978-3-031-71908-0_9⟩
Communication dans un congrès hal-04830385 v1
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Biodiversity Data Cubes for Cross-Cutting Science and Policy

Lina M Estupinan Suarez , Laura Abraham , Tim Adriaens , Lissa Breugelmans , David A Clarke et al.
EGU 2024 - General Assembly of European Geosciences Union, Apr 2024, Vienna, Austria. ⟨10.5194/egusphere-egu24-6353⟩
Communication dans un congrès lirmm-04834859 v1
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Cooperative learning of Pl@ntNet’s Artificial Intelligence algorithm using label aggregation

Tanguy Lefort , Antoine Affouard , Pierre Bonnet , Benjamin Charlier , Alexis Joly et al.
JDS 2024 - 55. Journées de Statistique, Société Française de Statistique, May 2024, Bordeaux, France. pp.35-44
Communication dans un congrès hal-04574223 v1
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Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi

Alexis Joly , Christophe Botella , Lukáš Picek , Stefan Kahl , Hervé Goëau et al.
CLEF 2023 - 14th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2023, Thessalokini, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩
Communication dans un congrès hal-04322219 v1
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Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing

Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Théo Larcher et al.
CLEF 2023 Working Notes - 24th Conference and Labs of the Evaluation Forum, Sep 2023, Thessalokini, Greece. pp.1954-1971
Communication dans un congrès hal-04322255 v1
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Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2023 Working Notes - 24th Conference and Labs of the Evaluation Forum, Mohammad Aliannejadi; Guglielmo Faggioli; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessalonique, Greece. pp.1972-1981
Communication dans un congrès hal-04345310 v1
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LifeCLEF 2023 teaser: Species Identification and Prediction Challenges

Alexis Joly , Stefan Kahl , Lukáš Picek , Christophe Botella , Diego Marcos et al.
ECIR 2023 - 45th European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩
Communication dans un congrès hal-04204378 v1

Pairwise Feature Learning for Unseen Plant Disease Recognition

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Yi Lung Then , Hervé Goëau et al.
ICIP 2023 - 30th IEEE International Conference on Image Processing, Thie Institute of Electrical and Electronics Engineers; Signal Processing Society, Oct 2023, Kuala Lumpur, Malaysia. pp.306-310, ⟨10.1109/ICIP49359.2023.10222401⟩
Communication dans un congrès hal-04214623 v1
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Overview of BirdCLEF 2023: Automated Bird Species Identification in Eastern Africa

Stefan Kahl , Tom Denton , Holger Klinck , Hendrik Reers , Francis Cherutich et al.
CLEF 2023 Working Notes - 24th Conference and Labs of the Evaluation Forum, Mohammad Aliannejadi; Guglielmo Faggiol; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessalonique, Greece. pp.1934-1942
Communication dans un congrès hal-04345437 v1
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Weighting Areas Under the Margin in crowdsourced datasets

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon
JDS 2023 - 54es Journées de Statistique, Société Française de Statistique (SFdS), Jul 2023, Bruxelles, Belgium
Communication dans un congrès hal-04562515 v1
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Species Distribution Modeling based on aerial images and environmental features with Convolutional Neural Networks

César Leblanc , Alexis Joly , Titouan Lorieul , Maximilien Servajean , Pierre Bonnet
CLEF 2022 Working Notes - 23rd Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Allan Hanbury; Martin Potthast, Sep 2022, Bologne, Italy. pp.2123-2150
Communication dans un congrès hal-03817452 v1

Overview of LifeCLEF 2022: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.
CLEF 2022 - 13th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2022, Bologna, Italy. pp.257-285, ⟨10.1007/978-3-031-13643-6_19⟩
Communication dans un congrès hal-03807746 v1
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Overview of PlantCLEF 2022: Image-based plant identification at global scale

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2022 Working Notes - 23rd Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1916-1928
Communication dans un congrès lirmm-03793591 v1
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Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings

Stefan Kahl , Amanda Navine , Tom Denton , Holger Klinck , Patrick Hart et al.
CLEF 2022 Working Notes - 23rd Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1929-1939
Communication dans un congrès hal-03791428 v1
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Crowdsourcing label noise simulation on image classification tasks

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon
JDS 2022 - 53es Journées de Statistique, Jun 2022, Lyon, France. pp.1063-1065
Communication dans un congrès hal-04562503 v1
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LifeCLEF 2022 Teaser: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.
ECIR 2022 - 44th European Conference on Information Retrieval Research, Apr 2022, Stavanger, Norway. pp.390-399, ⟨10.1007/978-3-030-99739-7_49⟩
Communication dans un congrès hal-03641389 v1
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Stochastic smoothing of the top-K calibrated hinge loss for deep imbalanced classification

Camille Garcin , Maximilien Servajean , Alexis Joly , Joseph Salmon
ICML 2022 - 39th International Conference on Machine Learning, Jul 2022, Baltimore, United States. pp.7208-7222
Communication dans un congrès hal-03828747 v1
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Integrating Citizen Observatories into School Environmental Education for Sustainability: Design and Evaluation of a Case Study Engaging Students with Pl@Ntnet and Odourcollect

Maria Daskolia , Matrona Pappa , Alexis Joly , Pierre Bonnet , Rosa Arias et al.
ICERI 2022 - 15th International Conference of Education, Research and Innovation, Nov 2022, Seville, Spain. pp.5479-5489, ⟨10.21125/iceri.2022.1345⟩
Communication dans un congrès hal-04613924 v1
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Overview of GeoLifeCLEF 2022: Predicting species presence from multi-modal remote sensing, bioclimatic and pedologic data

Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet et al.
CLEF 2022 Working Notes - 23rd Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1940-1956
Communication dans un congrès lirmm-03793595 v1
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How Do Deep Convolutional SDM Trained on Satellite Images Unravel Vegetation Ecology ?

Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz
ICPR 2020 - 25th International Conference on Pattern Recognition, Alberto Del Bimbo; Rita Cucchiara; Stan Sclaroff; Giovanni Maria Farinella; Tao Mei; Marco Bertini; Hugo Jair Escalante; Roberto Vezzani, Jan 2021, Milan / Virtual, Italy. pp.148-158, ⟨10.1007/978-3-030-68780-9_15⟩
Communication dans un congrès hal-03167637 v1
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Pl@ntNet-300K: a plant image dataset with high label ambiguity and a long-tailed distribution

Camille Garcin , Alexis Joly , Pierre Bonnet , Jean-Christophe Lombardo , Antoine Affouard et al.
NeurIPS 2021 - 35th Conference on Neural Information Processing Systems, Dec 2021, Virtual Conference, France. ⟨10.5281/zenodo.5645731⟩
Communication dans un congrès hal-03474556 v2

Pl@ntNet, la science des données au service de la biodiversité végétale

Alexis Joly
EGC 2021 - 21e Conférence Extraction et Gestion des Connaissances, Jan 2021, Montpellier, France. pp.5-6
Communication dans un congrès lirmm-03965364 v1
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Overview of LifeCLEF 2021: an evaluation of Machine-Learning based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.
CLEF 2021 - 12th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2021, Virtual Event, France. pp.371-393, ⟨10.1007/978-3-030-85251-1_24⟩
Communication dans un congrès hal-03415990 v1
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Overview of PlantCLEF 2021: cross-domain plant identification

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2021 Working Notes - 22nd Conference and Labs of the Evaluation Forum, Sep 2021, Bucarest, Romania. pp.1422-1436
Communication dans un congrès hal-03353469 v1

WeedElec: a robotic research platform for individual weed detection and selective electrical weeding

Florent Abdelghafour , Florian Rançon , Shiyu Liu , Julien Champ , Vincent de Rudnicki et al.
EPCA 2021 - 13th European Conference on Precision Agriculture, Jul 2021, Budapest, Hungary. pp.695-702, ⟨10.3920/978-90-8686-916-9_83⟩
Communication dans un congrès hal-03325689 v1
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Overview of GeoLifeCLEF 2021: Predicting species distribution from 2 million remote sensing images

Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet et al.
CLEF 2021 Working Notes - 22nd Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Alexis Joly; Maria Maistro; Florina Piroi, Sep 2021, Bucarest, Romania. pp.1451-1462, ⟨10.1109/ICPR48806.2021.9412643⟩
Communication dans un congrès hal-03353487 v1
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Conditional Multi-Task learning for Plant Disease Identification

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly
ICPR 2020 - 25th International Conference on Pattern Recognition, The International Association for Pattern Recognition (IAPR); ICPR2020 Organizing committee, Jan 2021, Milan, Italy. pp.3320-3327, ⟨10.1109/ICPR48806.2021.9412643⟩
Communication dans un congrès hal-03415972 v1
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Reproducible Performance Optimization of Complex Applications on the Edge-to-Cloud Continuum

Daniel Rosendo , Alexandru Costan , Gabriel Antoniu , Matthieu Simonin , Jean-Christophe Lombardo et al.
Cluster 2021 - IEEE International Conference on Cluster Computing, Sep 2021, Portland, OR, United States. pp.23-34, ⟨10.1109/Cluster48925.2021.00043⟩
Communication dans un congrès hal-03310540 v1
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Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments

Stefan Kahl , Mary Clapp , W Alexander Hopping , Hervé Goëau , Hervé Glotin et al.
CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece
Communication dans un congrès hal-02989101 v1
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Overview of LifeCLEF Plant Identification task 2020

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2020 - Conference and Labs of the Evaluation Forum, The CLEF Initiative, Sep 2020, Thessalonique, Greece
Communication dans un congrès hal-02980085 v1
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LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Rafael Ruiz de Castaneda , Hervé Glotin et al.
ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisbon, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩
Communication dans un congrès hal-02873670 v1
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Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF)

Benjamin Deneu , Titouan Lorieul , Elijah Cole , Maximilien Servajean , Christophe Botella et al.
CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece
Communication dans un congrès hal-02989077 v1
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Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Benjamin Deneu , Willem-Pier Vellinga et al.
CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩
Communication dans un congrès hal-02945382 v1
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Vers un désenchevêtrement de l'ambiguïté de la tâche et de l'incertitude du modèle pour la classification avec option de rejet à l'aide de réseaux neuronaux

Titouan Lorieul , Alexis Joly
CAP 2019 - 21e PFIA Conférence sur l'Apprentissage Automatique, Jul 2019, Toulouse, France
Communication dans un congrès hal-02421210 v1
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Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Maximilien Servajean et al.
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩
Communication dans un congrès hal-02281455 v1
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Overview of BirdCLEF 2019: Large-Scale Bird Recognition in Soundscapes

Stefan Kahl , Fabian-Robert Stöter , Hervé Goëau , Hervé Glotin , Robert Planque et al.
CLEF 2019 - Conference and Labs of the Evaluation Forum, Cappellato, L.; Ferro, N.; Losada, D. E.; Müller, H., Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02345644 v1
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Overview of LifeCLEF Plant Identification Task 2019: diving into Data Deficient Tropical Countries

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2019 - Conference and Labs of the Evaluation Forum, Linda Cappellato; Nicola Ferro; David E. Losada; Henning Müller, Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02283184 v1
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Location-Based Plant Species Prediction Using A CNN Model Trained On Several Kingdoms - Best Method Of GeoLifeCLEF 2019 Challenge

Mathilde Negri , Maximilien Servajean , Benjamin Deneu , Alexis Joly
CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02392637 v1
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Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences

Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly
CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02190170 v1
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LifeCLEF 2019: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Marion Poupard et al.
ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩
Communication dans un congrès hal-02273257 v1
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Evaluation of Deep Species Distribution Models using Environment and Co-occurrences

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩
Communication dans un congrès hal-02290310 v1
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A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States
Communication dans un congrès hal-03261122 v1
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Overview of GeoLifeCLEF 2018: location-based species recommendation

Christophe Botella , Pierre Bonnet , François Munoz , Pascal P. Monestiez , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913238 v1
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Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI

Alexis Joly , Hervé Goëau , Christophe Botella , Hervé Glotin , Pierre Bonnet et al.
CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩
Communication dans un congrès hal-01913231 v1
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Overview of ExpertLifeCLEF 2018: how far automated identification systems are from the best experts?

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913244 v1
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Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913241 v1
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Overview of BirdCLEF 2018: monospecies vs. soundscape bird identification

Hervé Goëau , Stefan Kahl , Hervé Glotin , Robert Planqué , Willem-Pier Vellinga et al.
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-02189229 v1
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Automated Herbarium Specimen Identification using Deep Learning

Jose Carranza-Rojas , Alexis Joly , Pierre Bonnet , Hervé Goëau , Erick Mata-Montero
TDWG: Biodiversity Information Standards, Oct 2017, Ottawa, Canada. pp.e20302, ⟨10.3897/tdwgproceedings.1.20302⟩
Communication dans un congrès hal-01629142 v1
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LifeCLEF Bird Identification Task 2017

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland
Communication dans un congrès hal-01629175 v1
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LifeCLEF 2017 Lab Overview: Multimedia Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.
CLEF: Cross-Language Evaluation Forum, Sep 2017, Dublin, Ireland. pp.255-274, ⟨10.1007/978-3-319-65813-1_24⟩
Communication dans un congrès hal-01629191 v1
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Pl@ntNet -My Business

Alexis Joly , Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Hervé Goëau
MM: Multimedia, Oct 2017, Mountain View, United States. pp.1-11
Communication dans un congrès hal-01638263 v1
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Plant identification based on noisy web data: the amazing performance of deep learning (LifeCLEF 2017)

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland
Communication dans un congrès hal-01629183 v1

Going deeper in the automated identification of Herbarium specimens

Pierre Bonnet , Alexis Joly , Hervé Goëau , Jean-Christophe Lombardo , Antoine Affouard et al.
Botany - Botanical Crossroads, Jun 2017, Forth Worth, TX, United States
Communication dans un congrès hal-01837387 v1
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Pl@ntNet app in the era of deep learning

Antoine Affouard , Hervé Goëau , Pierre Bonnet , Jean-Christophe Lombardo , Alexis Joly
ICLR: International Conference on Learning Representations, Apr 2017, Toulon, France
Communication dans un congrès hal-01629195 v1
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Plant Identification in an Open-world (LifeCLEF 2016)

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.428-439
Communication dans un congrès hal-01373780 v1
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Unsupervised Individual Whales Identification: Spot the Difference in the Ocean

Alexis Joly , Jean-Christophe Lombardo , Julien Champ , Anjara Saloma
CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.469-480
Communication dans un congrès hal-01373777 v1

An image-based Plant identification platform for thousands of species

Pierre Bonnet , Alexis Joly , Julien Champ , Hervé Goëau , Samuel Dufour-Kowalski et al.
ATBC: Association for Tropical Biology and Conservation, Jun 2016, Montpellier, France
Communication dans un congrès hal-01837355 v1
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ThePlantGame: Actively Training Human Annotators for Domain-specific Crowdsourcing

Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti
MM 2016 - 24th International Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.720-721, ⟨10.1145/2964284.2973820⟩
Communication dans un congrès hal-01373769 v1
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Floristic participation at LifeCLEF 2016 Plant Identification Task

Julien Champ , Hervé Goëau , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.450-458
Communication dans un congrès hal-01373776 v1
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LifeCLEF 2016: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.
CLEF: Cross-Language Evaluation Forum, Sep 2016, Évora, Portugal. pp.286-310, ⟨10.1007/978-3-319-44564-9_26⟩
Communication dans un congrès hal-01373781 v1
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Spatially Localized Visual Dictionary Learning

Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez
ICMR: International Conference on Multimedia Retrieval, Jun 2016, New York, United States. pp.367-370, ⟨10.1145/2911996.2912070⟩
Communication dans un congrès hal-01373778 v1
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Pl@ntNet, une plate-forme innovante d'agrégation et partage d'observations botaniques

Daniel Barthélémy , Nozha Boujemaa , Jean-François Molino , Alexis Joly , Hervé Goëau et al.
International Conference ‘Botanists of the Twenty-first Century’, UNESCO, Sep 2014, Paris, France. pp.191-197
Communication dans un congrès hal-01837361 v1
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Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sustain our Planet

Alexis Joly , Hervé Goëau , Julien Champ , Samuel Dufour-Kowalski , Henning Müller et al.
MM: Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.958-967, ⟨10.1145/2964284.2976762⟩
Communication dans un congrès hal-01373762 v1
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LifeCLEF Bird Identification Task 2016: The arrival of Deep learning

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.440-449
Communication dans un congrès hal-01373779 v1
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LifeCLEF Plant Identification Task 2015

Hervé Goëau , Pierre Bonnet , Alexis Joly
CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France
Communication dans un congrès hal-01182795 v1
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A comparative study of fine-grained classification methods in the context of the LifeCLEF plant identification challenge 2015

Julien Champ , Titouan Lorieul , Maximilien Servajean , Alexis Joly
CLEF 2015 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France
Communication dans un congrès hal-01182788 v1

Kernelizing Spatially Consistent Visual Matches for Fine-Grained Classification

Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez
ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shangai, China. pp.155-162, ⟨10.1145/2671188.2749328⟩
Communication dans un congrès hal-01145988 v1
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DigInPix: Visual Named-Entities Identification in Images and Videos

Pierre Letessier , Nicolas Hervé , Alexis Joly , Hakim Nabi , Mathieu Derval et al.
ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shanghai, China. pp.661-664, ⟨10.1145/2671188.2749369⟩
Communication dans un congrès hal-01182780 v1
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LifeCLEF Bird Identification Task 2015

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber et al.
CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France
Communication dans un congrès hal-01182796 v1
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LifeCLEF 2015: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.
CLEF: Cross-Language Evaluation Forum, Université de Toulouse. FRA., Sep 2015, Toulouse, France. pp.462-483, ⟨10.1007/978-3-319-24027-5_46⟩
Communication dans un congrès hal-01182782 v1
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Shared nearest neighbors match kernel for bird songs identification -LifeCLEF 2015 challenge

Alexis Joly , Valentin Leveau , Julien Champ , Olivier Buisson
CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France
Communication dans un congrès hal-01182784 v1

LifeCLEF 2014: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.
CLEF: Cross-Language Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.229-249, ⟨10.1007/978-3-319-11382-1_20⟩
Communication dans un congrès hal-01075770 v1
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Recognizing Thousands of Legal Entities through Instance-based Visual Classification

Valentin Leveau , Alexis Joly , Olivier Buisson , Pierre Letessier , Patrick Valduriez
MM: Conference on Multimedia, Nov 2014, Orlando, FL, United States. pp.1029-1032, ⟨10.1145/2647868.2655038⟩
Communication dans un congrès hal-01077508 v1
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Pl@ntNet Mobile 2014: Android port and new features

Hervé Goëau , Pierre Bonnet , Alexis Joly , Antoine Affouard , Vera Bakić et al.
ICMR: International Conference on Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.527-530, ⟨10.1145/2578726.2582618⟩
Communication dans un congrès hal-01088819 v1
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LifeCLEF Bird Identification Task 2014

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber et al.
CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.585-597
Communication dans un congrès hal-01088829 v1
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Instance-based Bird Species Identification with Undiscriminant Features Pruning

Alexis Joly , Julien Champ , Olivier Buisson
CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.625-633
Communication dans un congrès hal-01088798 v1
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LifeCLEF: Multimedia Life Species Identification

Alexis Joly , Henning Müller , Hervé Goëau , Hervé Glotin , Concetto Spampinato et al.
EMR: Environmental Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.7-13
Communication dans un congrès hal-01088812 v1
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PlantNet Participation at LifeCLEF2014 Plant Identification Task

Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Vera Bakić , Anne Verroust-Blondet et al.
CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.724-737
Communication dans un congrès halsde-01064569 v1
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PlantRT : a Distributed Recommendation Tool for Citizen Science

Maximilien Servajean , Esther Pacitti , Miguel Liroz-Gistau , Alexis Joly , Julien Champ
BDA: Gestion de Données — Principes, Technologies et Applications, Oct 2014, Autrans, France. pp.48-50
Communication dans un congrès hal-01163819 v1
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Fine-grained Visual Faceted Search

Julien Champ , Alexis Joly , Pierre Bonnet
MM: Conference on Multimedia, Nov 2014, Orlando, FL, United States. pp.721-722, ⟨10.1145/2647868.2654875⟩
Communication dans un congrès hal-01088822 v1
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LifeCLEF Plant Identification Task 2014

Hervé Goëau , Alexis Joly , Pierre Bonnet , Souheil Selmi , Jean-François Molino et al.
CLEF: Conference and Labs of the Evaluation Forum, University of Scheffield. GBR., Sep 2014, Sheffield, United Kingdom. pp.598-615
Communication dans un congrès halsde-01064599 v1
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The ImageCLEF 2013 Plant Identification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Daniel Barthélémy et al.
CLEF, Sep 2013, Valencia, Spain
Communication dans un congrès hal-00960929 v1
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Collaborative validation of visual data through the Pl@ntNet identification system

Samuel Dufour-Kowalski , Jeremy Salinier , Aurelien Peronnet , Jennifer Carré , Jean-Pascal Milcent et al.
TDWG 2013 - Annual Conference, Oct 2013, Florence, Italy
Communication dans un congrès hal-03885113 v1

Small objects query suggestion in a large web-image collection

Pierre Letessier , Nicolas Hervé , Julien Champ , Alexis Joly , Olivier Buisson et al.
ACM Multimedia, Oct 2013, Barcelone, Spain. ⟨10.1145/2502081.2502248⟩
Communication dans un congrès hal-00908891 v1

Imageclef 2013: the vision, the data and the open challenges

Caputo Barbara , Muller Henning , Thomee Bart , Villegas Mauricio , Roberto Paredes et al.
CLEF 2013 - 4th Conference and Labs of the Evaluation Forum : Information Access Evaluation meets Multilinguality, Multimodality, and Visualization, Sep 2013, Valencia, Spain. pp.250-268, ⟨10.1007/978-3-642-40802-1_26⟩
Communication dans un congrès istex hal-00908881 v1
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Inria's participation at ImageCLEF 2013 Plant Identification Task

Vera Bakić , Sofiène Mouine , Saloua Ouertani-Litayem , Anne Verroust-Blondet , Itheri Yahiaoui et al.
CLEF (Online Working Notes/Labs/Workshop) 2013, Sep 2013, Valencia, Spain
Communication dans un congrès hal-00874330 v1

OTmedia: The French Transmedia News Observatory

Nicolas Hervé , Marie-Luce Viaud , Jérôme Thievre , Agnès Saulnier , Pierre Letessier et al.
ACM Multimedia, Oct 2013, Barcelone, Spain. pp.441-442, ⟨10.1145/2502081.2502260⟩
Communication dans un congrès hal-00908925 v1
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Pl@ntNet Mobile App

Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Julien Barbe et al.
MM 2013 - 21st ACM International Conference on Multimedia, Oct 2013, Barcelone, Spain. pp.423-424, ⟨10.1145/2502081.2502251⟩
Communication dans un congrès hal-00908910 v1

The Imageclef Plant Identification Task 2013

Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Jean-François Molino et al.
MAED: Multimedia Analysis for Ecological Data, Oct 2013, Barcelone, Spain. pp.23-28, ⟨10.1145/2509896.2509902⟩
Communication dans un congrès hal-00908934 v1
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Visual-Based Transmedia Events Detection

Alexis Joly , Julien Champ , Pierre Letessier , Nicolas Hervé , Olivier Buisson et al.
MM '12: 20th International conference on Multimedia, ACM, Nov 2012, Nara, Japan. pp.1351-1352, ⟨10.1145/2393347.2396480⟩
Communication dans un congrès hal-00755696 v1
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Inria IMEDIA2's Participation at ImageCLEF 2012 Plant Identification Task

Vera Bakić , Itheri Yahiaoui , Sofiène Mouine , Saloua Litayem Ouertani , Wajih Ouertani et al.
CLEF (Online Working Notes/Labs/Workshop) 2012, Sep 2012, Rome, Italy
Communication dans un congrès hal-00744901 v1

Scalable Mining of Small Visual Objects

Pierre Letessier , Alexis Joly , Olivier Buisson
MM'12: 20th ACM international conference on Multimedia, Oct 2012, Nara, Japan. pp.599-608
Communication dans un congrès hal-00739735 v1
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The ImageCLEF 2012 Plant Identification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Itheri Yahiaoui , Daniel Barthélémy et al.
CLEF'2012: Conference and Labs of the Evaluation Forum, Sep 2012, Rome, Italy
Communication dans un congrès hal-00960918 v1

Multi-Organ Plant Identification

Hervé Goëau , Pierre Bonnet , Julien Barbe , Vera Bakić , Alexis Joly et al.
ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.41--44
Communication dans un congrès hal-00739724 v1

Distributed KNN-graph approximation via hashing

Riadh Mohamed Trad , Alexis Joly , Boujemaa Nozha
ICMR - International Conference on Multimedia Retrieval - 2012, Jun 2012, Hong-Kong, Hong Kong SAR China. pp.43:1--43:8, ⟨10.1145/2324796.2324847⟩
Communication dans un congrès hal-00739713 v1

Distributed approximate KNN Graph construction for high dimensional Data

Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa
BDA 2012 - 28e journées Bases de Donnees Avancées, Oct 2012, Clermont-Ferrand, France
Communication dans un congrès hal-00756624 v1

Plant Leaves Morphological Categorization with Shared Nearest Neighbours Clustering

Amel Hamzaoui , Alexis Joly , Nozha Boujemaa
ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.37--40
Communication dans un congrès hal-00739715 v1
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Hash-Based Support Vector Machines Approximation for Large Scale Prediction

Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa
BMVC: British Machine Vision Conference, Sep 2012, Surrey, United Kingdom. pp.86.1-86.11
Communication dans un congrès hal-00733912 v1

The Pl@ntnet project: plant computational identification and collaborative information system

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.
IBC 2011 - XVIII International Botanical congress, Jul 2011, Melbourne, Australia
Communication dans un congrès hal-02810776 v1
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Random Maximum Margin Hashing

Alexis Joly , Olivier Buisson
CVPR'11 - IEEE Computer Vision and Pattern Recognition, Jun 2011, Colorado springs, United States. pp.873-880, ⟨10.1109/CVPR.2011.5995709⟩
Communication dans un congrès hal-00642178 v1
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Interpretable Visual Models for Human Perception-Based Object Retrieval

Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa
ICMR'11 - First ACM International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.21:1--21:8, ⟨10.1145/1991996.1992017⟩
Communication dans un congrès hal-00642232 v1
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Large scale visual-based event matching

Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa
ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.53:1--53:7, ⟨10.1145/1991996.1992049⟩
Communication dans un congrès hal-00642210 v1
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Visual-based plant species identification from crowdsourced data

Hervé Goëau , Alexis Joly , Souheil Selmi , Pierre Bonnet , Elise Mouysset et al.
MM'11 - ACM Multimedia 2011, Nov 2011, Scottsdale, United States. pp.0-0, ⟨10.1145/2072298.2072472⟩
Communication dans un congrès hal-00642236 v1

Access to botanical data through multimedia and collaborative retrieval

Jean-François Molino , Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Alexis Joly et al.
Conference on Multilingual and Multimodal Information Access Evaluation (CLEF), Sep 2011, Amsterdam, Netherlands
Communication dans un congrès hal-02804437 v1
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The CLEF 2011 Plant Images Classification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy et al.
Working Notes for CLEF 2011 Conference, Vivien Petras; Pamela Forner; Paul Clough; Nicola Ferro, Sep 2011, Amsterdam, Netherlands
Communication dans un congrès hal-03778869 v1

The Pl@ntNet project: Plant Computational Identification and Collaborative Information System

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.
Biosystematics 2011 - Digital identification methods in the digital age - morphological and molecular, computer-aided and fully automated, research and citizen science, Feb 2011, Berlin, Germany
Communication dans un congrès hal-02808663 v1
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The ImageCLEF 2011 plant images classification task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy et al.
ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands
Communication dans un congrès hal-00642197 v1

The Pl@ntnet project: plant computational identification and collaborative information system

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.
IBC2011. XVIII International Botanical Congress, Jul 2011, Melbourne, Australia
Communication dans un congrès hal-03776985 v1
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Participation of INRIA & Pl@ntNet to ImageCLEF 2011 plant images classification task

Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Pierre Bonnet , Elise Mouysset
ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands. pp.0-0
Communication dans un congrès hal-00642239 v1
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Consistent Visual Words Mining with Adaptive Sampling

Pierre Letessier , Olivier Buisson , Alexis Joly
ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.0-0, ⟨10.1145/1991996.1992045⟩
Communication dans un congrès hal-00642202 v1
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Interactive Objects Retrieval with Efficient Boosting

Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa
MM'09 - Proceedings of the 17th ACM international conference on Multimedia, Oct 2009, Beijing, China. pp.545--548, ⟨10.1145/1631272.1631352⟩
Communication dans un congrès hal-00724876 v1

Video copy detection

Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson et al.
ACM International Conference on Image and Video Retrieval (CIVR’07), Jul 2007, Amsterdam, Netherlands. pp.371-378, ⟨10.1145/1282280.1282336⟩
Communication dans un congrès hal-02338328 v1
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Video Copy Detection: a Comparative Study

Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson et al.
CIVR 2007, Jul 2007, Amsterdam, France
Communication dans un congrès hal-02420846 v1
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Citizen scientists contribution to monitor Asian biodiversity: a case study on flora of Peninsula Malaysia

Sue Han Lee , Hervé Goëau , Alexis Joly , Simying Ong , Yuen Peng Loh et al.
Julien Claude; Noppadon Kitana. On the Edge of the Sixth Mass Extinction in Biodiversity Hotspots: Facts, needs, solutions and opportunities in Thailand and adjacent countries, CU press, pp.139-160, 2024
Chapitre d'ouvrage hal-04970397 v1
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Advancing the productivity of science with citizen science and artificial intelligence

Luigi Ceccaroni , J L Oliver , Erin Roger , James Bibby , Paul Flemons et al.
OECD iLibrary. Artificial Intelligence in Science: Challenges, Opportunities and the Future of Research, , 2023, 9789264446212. ⟨10.1787/69563b12-en⟩
Chapitre d'ouvrage hal-04204315 v1
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Biodiversity Information Retrieval Through Large Scale Content-Based Identification: A Long-Term Evaluation

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.
Nicola Ferro; Carol Peters. Information Retrieval Evaluation in a Changing World: Lessons Learned from 20 Years of CLEF, 41, Springer, pp.389-413, 2019, The Information Retrieval Series, 978-3-030-22948-1. ⟨10.1007/978-3-030-22948-1_16⟩
Chapitre d'ouvrage hal-02273280 v1
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Plant Identification: Experts vs. Machines in the Era of Deep Learning

Pierre Bonnet , Hervé Goëau , Siang Thye Hang , Mario Lasseck , Milaň Sulc et al.
Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Chapter 8, Editions Springer, pp.131-149, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_8⟩
Chapitre d'ouvrage hal-01913277 v1

Multimedia Tools and Applications for Environmental & Biodiversity Informatics - Preface

Alexis Joly , Pierre Bonnet , Stefanos Vrochidis , Kostas Karatzas , Ari Karppinen
Joly A.; Vrochidis S.; Karatzas K.; Karppinen A.; Bonnet P. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.1-7, 2018, Multimedia Systems and Applications (MMSA), 978-3-319-76445-0; 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_1⟩
Chapitre d'ouvrage hal-02786879 v1
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A deep learning approach to Species Distribution Modelling

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal Monestiez , François Munoz
Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩
Chapitre d'ouvrage hal-01834227 v1
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Automated identification of herbarium specimens at different taxonomic levels

Jose Carranza-Rojas , Alexis Joly , Hervé Goëau , Erick Mata-Montero , Pierre Bonnet
Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Multimedia Systems and Applications, Editions Springer, pp.151-167, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_9⟩
Chapitre d'ouvrage hal-01913272 v1
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Pl@ntNet, ten years of automatic plant identification and monitoring

Alexis Joly , Antoine Affouard , Mathias Chouet , Benjamin Deneu , Joaquim Estopinan et al.
IUCN - Congrès mondial de la nature, Sep 2021, Marseille, France.
Poster de conférence hal-03343235 v1

Potential and limits of automated plant identification based on visual data, feedbacks from the development of Pl@ntNet initiative

Pierre Bonnet , Alexis Joly , Hervé Goëau , Jean-Christophe Lombardo , Antoine Affouard et al.
Botany 2017, Jun 2017, Forth Worth, TX, United States. , 2017
Poster de conférence hal-01837383 v1
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PlantRT : a Distributed and Diversified Recommendation Tool for Citizen Sciences

Maximilien Servajean , Esther Pacitti , Miguel Liroz-Gistau , Alexis Joly , Julien Champ
BDA 2014 - 30e Conférence sur la Gestion de Données — Principes, Technologies et Applications, Oct 2014, Autrans, France. , 2014
Poster de conférence lirmm-01088733 v1
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DataManager, un système novateur de gestion et d’échange de données botaniques distribuées

Samuel Dufour-Kowalski , Mathias Chouet , Antoine Affouard , Jean-Pascal Milcent , Grégoire Duché et al.
Quels botanistes pour le 21e siècle ? Métiers, enjeux, opportunités, Sep 2014, Paris, France. , 2014
Poster de conférence hal-01074648 v1

Advances in taxonomic identification by image recognition, with the generic content-based image retrieval IKONA

Mathieu Coutaud , Pierre Bonnet , Alexis Joly , Raffi Enficiaud , Nozha Boujemaa et al.
e-Biosphere 09 International Conference on Biodiversity Informatics, Jun 2009, London, United Kingdom. 2009
Poster de conférence hal-02814506 v1