Alexis Joly

218
Documents

Publications

Publications

Standardizing plant damage datasets via EPPO taxonomy: A label harmonization approach using large language models

Jules Vandeputte , Lydia Bousset , Jean-Marc Armand , Hervé Goëau , Jean-Christophe Lombardo et al.

Smart Agricultural Technology, 2026, 13, pp.101837. ⟨10.1016/j.atech.2026.101837⟩

Article dans une revue hal-05558287v1
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Cooperative learning of Pl@ntNet's Artificial Intelligence algorithm: how does it work and how can we improve it?

Tanguy Lefort , Antoine Affouard , Benjamin Charlier , Jean-Christophe Lombardo , Mathias Chouet et al.

Methods in Ecology and Evolution, 2026, 17 (2), pp.392-403. ⟨10.1111/2041-210X.14486⟩

Article dans une revue hal-04603038v2

Cascading predictions from common to uncommon species improves species distribution models for plants

Jiexun Xu , Kimberly Low , Christophe Botella , Benjamin Deneu , Dennis Shasha et al.

Ecological Informatics, 2026, 93, pp.103424. ⟨10.1016/j.ecoinf.2025.103424⟩

Article dans une revue hal-05457107v1
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PlantCLEF 2025: Advancing AI-based Multi-Species Plant Identification in Vegetation Quadrats for Supporting Environmental Law and Biodiversity Monitoring

Giulio Martellucci , Hervé Goëau , Pierre Bonnet , Fabrice Vinatier , Alexis Joly

Biodiversity Information Science and Standards, 2025, 9, pp.e181733. ⟨10.3897/biss.9.181733⟩

Article dans une revue hal-05442222v1
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From underwater to drone: A novel multi-scale knowledge distillation approach for coral reef monitoring

Matteo Contini , Victor Illien , Julien Barde , Sylvain Poulain , Serge Bernard et al.

Ecological Informatics, 2025, 89, 103149 (16p.). ⟨10.1016/j.ecoinf.2025.103149⟩

Article dans une revue hal-05105687v1
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Can Masked Autoencoders Also Listen to Birds?

Lukas Rauch , René Heinrich , Ilyass Moummad , Alexis Joly , Bernhard Sick et al.

Transactions on Machine Learning Research Journal, 2025

Article dans une revue hal-05457126v1
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Using reflectance spectra and Pl@ntNet to identify herbarium specimens: a case study with <i>Lithocarpus</i>

Barbara M. Neto‐bradley , Pierre Bonnet , Hervé Goëau , Alexis Joly , Jeannine Cavender‐bares et al.

New Phytologist, 2025, ⟨10.1111/nph.70258⟩

Article dans une revue hal-05155975v1
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PlantAIM: A new baseline model integrating global attention and local features for enhanced plant disease identification

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Hervé Goëau , Pierre Bonnet et al.

Smart Agricultural Technology, 2025, 10, pp.100813. ⟨10.1016/j.atech.2025.100813⟩

Article dans une revue hal-05017656v1
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Learning the syntax of plant assemblages

César Leblanc , Pierre Bonnet , Maximilien Servajean , Wilfried Thuiller , Milan Chytrý et al.

Nature Plants, 2025, 11, pp.2026-2040. ⟨10.1038/s41477-025-02105-7⟩

Article dans une revue hal-05313746v1
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From Presence‐Only to Abundance Species Distribution Models Using Transfer Learning

Benjamin Bourel , Alexis Joly , Maximilien Servajean , Simon Bettinger , José Antonio Sanabria-Fernández et al.

Ecology Letters, 2025, 28 (7), pp.e70177. ⟨10.1111/ele.70177⟩

Article dans une revue hal-05380189v1

Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images

Vincent Espitalier , Jean-Christophe Lombardo , Hervé Goëau , Christophe Botella , Toke Thomas Høye et al.

Ecological Informatics, 2025, 89, pp.103129. ⟨10.1016/j.ecoinf.2025.103129⟩

Article dans une revue hal-05046527v1
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Fully automatic extraction of morphological traits from the web: Utopia or reality?

Diego Marcos , Robert van de Vlasakker , Ioannis N. Athanasiadis , Pierre Bonnet , Hervé Goëau et al.

Applications in Plant Sciences, 2025, 13 (3), ⟨10.1002/aps3.70005⟩

Article dans une revue hal-05101346v1

Seatizen Atlas: a collaborative dataset of underwater and aerial marine imagery

Matteo Contini , Victor Illien , Mohan Julien , Mervyn Ravitchandirane , Victor Russias et al.

Scientific Data , 2025, 12 (1), pp.67. ⟨10.1038/s41597-024-04267-z⟩

Article dans une revue hal-04918784v1
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Can we harmonize the monitoring of plants and pollinators?

Emmanuelle Porcher , Pierre Bonnet , Christian Damgaard , Pieter de Frenne , Nicolas Deguines et al.

New Phytologist, 2024, 244 (1), pp.39-42. ⟨10.1111/nph.20038⟩

Article dans une revue hal-04680061v1
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Peerannot: classification for crowdsourced image datasets with Python

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon

Computo, 2024, ⟨10.57750/qmaz-gr91⟩

Article dans une revue hal-04202889v1
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Predicting species distributions in the open ocean with convolutional neural networks

Gaétan Morand , Alexis Joly , Tristan Rouyer , Titouan Lorieul , Julien Barde

Peer Community Journal, 2024, 4, pp.e93. ⟨10.24072/pcjournal.471⟩

Article dans une revue hal-04754491v1
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Optimal checkpointing for heterogeneous chains: how to train deep neural networks with limited memory Optimal Re-Materialization Strategies for Heterogeneous Chains: How to Train Deep Neural Networks with Limited Memory

Olivier Beaumont , Lionel Eyraud-Dubois , Julien Herrmann , Alexis Joly , Alena Shilova

ACM Transactions on Mathematical Software, 2024, 50 (2), pp.1-38. ⟨10.1145/3648633⟩

Article dans une revue hal-02352969v2

Identify ambiguous tasks combining crowdsourced labels by weighting Areas Under the Margin

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon

Transactions on Machine Learning Research Journal, 2024

Article dans une revue hal-03812716v1

Beyond supervision: Harnessing self-supervised learning in unseen plant disease recognition

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Pierre Bonnet , Alexis Joly

Neurocomputing, 2024, 610, pp.128608. ⟨10.1016/j.neucom.2024.128608⟩

Article dans une revue hal-04815172v1
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Detecting flowers on imagery with computer vision to improve continental scale grassland biodiversity surveying

Neija Elvekjaer , Laura Martínez-Sanchez , Pierre Bonnet , Alexis Joly , Maria Luisa Paracchini et al.

Ecological Solutions and Evidence, 2024, 5, ⟨10.1002/2688-8319.12324⟩

Article dans une revue hal-04593804v1
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Mapping global orchid assemblages with deep learning provides novel conservation insights

Joaquim Estopinan , Maximilien Servajean , Pierre Bonnet , Alexis Joly , François Munoz

Ecological Informatics, 2024, 81, pp.102627. ⟨10.1016/j.ecoinf.2024.102627⟩

Article dans une revue hal-04581266v1
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A deep-learning framework for enhancing habitat identification based on species composition

César Leblanc , Pierre Bonnet , Maximilien Servajean , Milan Chytrý , Svetlana Aćić et al.

Applied Vegetation Science, 2024, 27 (3), pp.e12802. ⟨10.1111/avsc.12802⟩

Article dans une revue hal-04700157v1
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Revolutionizing Plant Pathogen Conservation: The Past, Present, and Future of AI in Preserving Natural Ecosystems

Sue Han Lee , Zhe Rui Liaw , Yu Hao Chai , Shien Lin Ng , Pierre Bonnet et al.

Biodiversity Information Science and Standards, 2024, 8, pp.e133055. ⟨10.3897/biss.8.133055⟩

Article dans une revue hal-04701227v1

GeoAI for Marine Ecosystem Monitoring: a Complete Workflow to Generate Maps from AI Model Predictions

Justine Talpaert Daudon , Matteo Contini , Isabel Urbina-Barreto , Brianna Elliott , François Guilhaumon et al.

ISPRS International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, 2023, XLVIII-4/W7-2023, pp.223-230. ⟨10.5194/isprs-archives-XLVIII-4-W7-2023-223-2023⟩

Article dans une revue hal-04204101v1
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Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers

Shamprikta Mehreen , Hervé Goëau , Pierre Bonnet , Sophie Chau , Julien Champ et al.

Plant Phenomics, 2023, 5 (#0112), ⟨10.34133/plantphenomics.0112⟩

Article dans une revue hal-04322179v1
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Envisaging a global infrastructure to exploit the potential of digitised collections

Quentin Groom , Mathias Dillen , Wouter Addink , Arturo Ariño , Christian Bölling et al.

BDJ Open, 2023, 11, ⟨10.3897/BDJ.11.e109439⟩

Article dans une revue hal-03871553v1
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Life Science Workflow Services (LifeSWS): motivations and architecture

Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso et al.

Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, Lecture Notes in Computer Science, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩

Article dans une revue lirmm-04173545v1
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Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Mathias Chouet , Hugo Gresse et al.

Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩

Article dans une revue hal-04430929v1
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Pl@ntNet Crops: merging citizen science observations and structured survey data to improve crop recognition for agri-food-environment applications

Marijn van Der Velde , Hervé Goëau , Pierre Bonnet , Raphaël d'Andrimont , Martin Yordanov et al.

Environmental Research Letters, 2023, 18 (2), pp.025005. ⟨10.1088/1748-9326/acadf3⟩

Article dans une revue hal-03965684v1
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Modern Approaches to the Monitoring of Biоdiversity (MAMBO)

Toke Thomas Høye , Tom August , Mario V Balzan , Koos Biesmeijer , Pierre Bonnet et al.

Research Ideas and Outcomes, 2023, 9, pp.e116951. ⟨10.3897/rio.9.e116951⟩

Article dans une revue hal-04405026v1
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Deep Species Distribution Modeling From Sentinel-2 Image Time-Series: A Global Scale Analysis on the Orchid Family

Joaquim Estopinan , Maximilien Servajean , Pierre Bonnet , François Munoz , Alexis Joly

Frontiers in Plant Science, 2022, 13, pp.839327. ⟨10.3389/fpls.2022.839327⟩

Article dans une revue hal-03693593v1
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Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion

Christophe Botella , Pierre Bonnet , Cang Hui , Alexis Joly , David M. Richardson

Biology, 2022, 11 (9), pp.1293. ⟨10.3390/biology11091293⟩

Article dans une revue hal-03771760v1
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Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest

Hervé Goëau , Titouan Lorieul , Patrick Heuret , Alexis Joly , Pierre Bonnet

Plants, 2022, 11 (4), pp.530-552. ⟨10.3390/plants11040530⟩

Article dans une revue hal-03601464v1
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How Networks of Citizen Observatories Can Increase the Quality and Quantity of Citizen-Science-Generated Data Used to Monitor SDG Indicators

Sasha Woods , Maria Daskolia , Alexis Joly , Pierre Bonnet , Karen Soacha et al.

Sustainability, 2022, 14 (7), ⟨10.3390/su14074078⟩

Article dans une revue hal-03658842v1
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Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks?

Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz

Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.839279⟩

Article dans une revue hal-03695760v1
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Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez

Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩

Article dans une revue hal-03150701v1
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Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment

Benjamin Deneu , Maximilien Servajean , Pierre Bonnet , Christophe Botella , François Munoz et al.

PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩

Article dans une revue hal-03220977v1
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AI-based Identification of Plant Photographs from Herbarium Specimens

Hervé Goëau , Pierre Bonnet , Alexis Joly

Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73751⟩

Article dans une revue hal-03338823v1
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Customized e-floras: How to develop your own project on the Pl@ntNet platform

Antoine Affouard , Mathias Chouet , Jean-Christophe Lombardo , Hugo Gresse , Hervé Goëau et al.

Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73857⟩

Article dans une revue hal-03338811v1

Report on the 12th conference and labs of the evaluation forum (CLEF 2021)

K. Selçuk Candan , Guglielmo Faggioli , Nicola Ferro , Lorraine Goeuriot , Bogdan Ionescu et al.

Sigir Forum, 2021, 55 (2), pp.1-12. ⟨10.1145/3527546.3527564⟩

Article dans une revue hal-03869971v1
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Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of Streptanthus tortuosus

Natalie Love , Pierre Bonnet , Hervé Goëau , Alexis Joly , Susan Mazer

Plants, 2021, 10 (11), pp.2471. ⟨10.3390/plants10112471⟩

Article dans une revue hal-03454183v1

Identifying gaps in the photographic record of the vascular plant flora of the Americas

Nigel C. A. Pitman , Tomomi Suwa , Carmen Ulloa Ulloa , James Miller , James Solomon et al.

Nature Plants, 2021, 7, pp.1010-1014. ⟨10.1038/s41477-021-00974-2⟩

Article dans une revue hal-03312029v1
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A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN

Charles C. Davis , Julien Champ , Daniel Park , Ian Breckheimer , Goia Lyra et al.

Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.01129⟩

Article dans une revue hal-02909794v1
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A new fine‐grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction

Hervé Goëau , Adán Mora‐fallas , Julien Champ , Natalie Lauren Rossington Love , Susan Mazer et al.

Applications in Plant Sciences, 2020, 8 (6), pp.#e11368. ⟨10.1002/aps3.11368⟩

Article dans une revue hal-02894994v1
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Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection

Christophe Botella , Alexis Joly , Pascal Monestiez , Pierre Bonnet , François Munoz

PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩

Article dans une revue hal-02639237v1
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Pl@ntNet Services, a Contribution to the Monitoring and Sharing of Information on the World Flora

Pierre Bonnet , Julien Champ , Hervé Goëau , Fabian-Robert Stöter , Benjamin Deneu et al.

Biodiversity Information Science and Standards, 2020, 4, pp.e58933. ⟨10.3897/biss.4.58933⟩

Article dans une revue hal-02973673v1
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Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research

Katelin D. Pearson , Gil Nelson , Myla Aronson , Pierre Bonnet , Laura Brenskelle et al.

Bioscience, 2020, 70 (7), pp.610-620. ⟨10.1093/biosci/biaa044⟩

Article dans une revue hal-02573627v1
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Instance segmentation for automated weeds and crops detection in farmlands

Adán Mora-Fallas , Hervé Goëau , Alexis Joly , Pierre Bonnet , Erick Mata-Montero

Revista Tecnología en Marcha, 2020, pp.13-17. ⟨10.18845/tm.v33i5.5069⟩

Article dans une revue hal-02989049v1
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AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery

Tom August , Oliver Pescott , Alexis Joly , Pierre Bonnet

Patterns, 2020, 1 (7), pp.100116. ⟨10.1016/j.patter.2020.100116⟩

Article dans une revue hal-02989043v1
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How citizen scientists contribute to monitor protected areas thanks to automatic plant identification tools

Pierre Bonnet , Alexis Joly , Jean-Michel Faton , Susan Brown , David Kimiti et al.

Ecological Solutions and Evidence, 2020, 1 (2), ⟨10.1002/2688-8319.12023⟩

Article dans une revue hal-02937618v1
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New perspectives on plant disease characterization based on deep learning

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly

Computers and Electronics in Agriculture, 2020, 170, pp.105220. ⟨10.1016/j.compag.2020.105220⟩

Article dans une revue hal-02470280v1
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Contribution citoyenne au suivi de la flore d'un parc national français, un exemple remarquable à l'échelle du Parc national des Cévennes

Pierre Bonnet , Hervé Goëau , Frantz Hopkins , Errol Véla , Amandine Sahl et al.

Carnets Botaniques, 2020, 21, pp.1-9. ⟨10.34971/zaz0-n247⟩

Article dans une revue hal-02981760v1
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Attention-Based Recurrent Neural Network for Plant Disease Classification

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly

Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.601250⟩

Article dans une revue hal-03064464v1
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Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots

Julien Champ , Adán Mora‐fallas , Hervé Goëau , Erick Mata‐montero , Pierre Bonnet et al.

Applications in Plant Sciences, 2020, 8 (7), pp.e11373. ⟨10.1002/aps3.11373⟩

Article dans une revue hal-02910844v1
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Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

Titouan Lorieul , Katelin D. Pearson , Elizabeth R. Ellwood , Hervé Goëau , Jean‐francois Molino et al.

Applications in Plant Sciences, 2019, 7 (3), pp.e01233. ⟨10.1002/aps3.1233⟩

Article dans une revue hal-02137748v1
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DZI: An Air Index for Spatial Queries in One-dimensional Channels

Kwangjin Park , Alexis Joly , Patrick Valduriez

Data and Knowledge Engineering, 2019, 124, pp.101748. ⟨10.1016/j.datak.2019.101748⟩

Article dans une revue lirmm-02386429v1
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Au-delà de la collecte des données dans les projets de sciences citoyennes : ouvrir le champ de l’analyse et de l’interprétation des données aux citoyens.

Sylvie Blangy , Valentin Lhoste , Céline Arnal , Jennifer Carré , Anaïs Chapot et al.

Technologie et innovation, 2018, 18- 3, pp.1-27. ⟨10.21494/ISTE.OP.2018.0289⟩

Article dans une revue hal-01824900v1
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Species distribution modeling based on the automated identification of citizen observations

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal P. Monestiez , François Munoz

Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩

Article dans une revue hal-01739481v1
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Non-parametric Bayesian annotator combination

Maximilien Servajean , Romain Chailan , Alexis Joly

Information Sciences, 2018, 436-437, pp.131-145. ⟨10.1016/j.ins.2018.01.020⟩

Article dans une revue lirmm-01703020v1
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Crowdsourcing Thousands of Specialized Labels: A Bayesian Active Training Approach

Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti

IEEE Transactions on Multimedia, 2017, 19 (6), pp.1376-1391. ⟨10.1109/TMM.2017.2653763⟩

Article dans une revue hal-01629149v1
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Going deeper in the automated identification of Herbarium specimens

Jose Carranza-Rojas , Hervé Goëau , Pierre Bonnet , Erick Mata-Montero , Alexis Joly

BMC Evolutionary Biology, 2017, 17 (1), pp.181. ⟨10.1186/s12862-017-1014-z⟩

Article dans une revue hal-01580070v1

Guest Editorial: Environmental Multimedia Retrieval

Stefanos Vrochidis , Kostas D. Karatzas , Ari Karppinen , Alexis Joly

Multimedia Tools and Applications, 2016, 75 (3), pp.1557-1562. ⟨10.1007/s11042-016-3256-y⟩

Article dans une revue hal-01373782v1
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A look inside the Pl@ntNet experience

Alexis Joly , Pierre Bonnet , Hervé Goëau , Julien Barbe , Souheil Selmi et al.

Multimedia Systems, 2016, 22 (6), pp.751-766. ⟨10.1007/s00530-015-0462-9⟩

Article dans une revue hal-01182775v1
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Plant identification: Man vs. Machine

Pierre Bonnet , Alexis Joly , Hervé Goëau , Julien Champ , Christel Vignau et al.

Multimedia Tools and Applications, 2016, LifeCLEF 2014 plant identification challenge, 75 (3), pp.1647-1665. ⟨10.1007/s11042-015-2607-4⟩

Article dans une revue hal-01182778v1
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Categorizing plant images at the variety level: Did you say fine-grained?

Julien Champ , Titouan Lorieul , Pierre Bonnet , Najate Maghnaoui , Christophe Sereno et al.

Pattern Recognition Letters, 2016, 81, pp.71-79. ⟨10.1016/j.patrec.2016.05.022⟩

Article dans une revue lirmm-01348914v1

Interactive plant identification based on social image data

Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Julien Barbe et al.

Ecological Informatics, 2014, 23, pp.22-34. ⟨10.1016/j.ecoinf.2013.07.006⟩

Article dans une revue hal-00908872v2

Pl@ntNet, un réseau et des outils pour une recherche participative

Alexis Joly , Pierre Bonnet , Hervé Goëau

Interstices, 2014

Article dans une revue hal-01350266v1

Object-based visual query suggestion

Amel Hamzaoui , Pierre Letessier , Alexis Joly , Olivier Buisson , Nozha Boujemaa

Multimedia Tools and Applications, 2014, Multimedia Tools and Applications, 68 (2), pp.429-454. ⟨10.1007/s11042-012-1340-5⟩

Article dans une revue hal-00806635v1

BLasso for object categorization and retrieval: Towards interpretable visual models

Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa

Pattern Recognition, 2012, 45 (6), pp.2377-2389. ⟨10.1016/j.patcog.2011.11.022⟩

Article dans une revue istex hal-00739706v1
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Content-based Copy Retrieval using Distortion-based Probabilistic Similarity Search

Alexis Joly , Olivier Buisson , Carl Frélicot

IEEE Transactions on Multimedia, 2008, ⟨10.1109/TMM.2006.886278⟩

Article dans une revue hal-02420864v1
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Hashing-Baseline: Rethinking Hashing in the Age of Pretrained Models

Ilyass Moummad , Kawtar Zaher , Lukas Rauch , Alexis Joly

ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech, and Signal Processing, May 2026, Barcelona, Spain

Communication dans un congrès hal-05558414v1

LifeCLEF 2025 Teaser: Challenges on Species Presence Prediction and Identification, and Individual Animal Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Lukáš Adam et al.

47. European Conference on Information Retrieval - ECIR 2025, Apr 2025, Lucca, Italy. pp.373-381, ⟨10.1007/978-3-031-88720-8_57⟩

Communication dans un congrès hal-05135815v1
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Overview of BirdCLEF+ 2025: Multi-Taxonomic Sound Identification in the Middle Magdalena, Colombia

Juan Sebastián Cañas , Stefan Kahl , Tom Denton , María Paula Toro-Gómez , Susana Rodriguez-Buritica et al.

CLEF 2025 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2025, Madrid, Spain. pp.2909-2919

Communication dans un congrès hal-05319248v1
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Overview of PlantCLEF 2025: Multi-Species Plant Identification in Vegetation Quadrat Images ⋆ Notebook for the LifeCLEF Lab at CLEF 2025

Giulio Martellucci , Hervé Goëau , Pierre Bonnet , Fabrice Vinatier , Alexis Joly

CLEF 2025 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2025, Madrid, Spain. pp.2942-2954

Communication dans un congrès hal-05319328v1
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A two-head loss function for deep Average-K classification

Camille Garcin , Maximilien Servajean , Alexis Joly , Joseph Salmon

WACV 2025 - IEEE/CVF Winter Conference on Applications of Computer Vision, Feb 2025, Tucson, United States. pp.7358-7367, ⟨10.1109/WACV61041.2025.00715⟩

Communication dans un congrès hal-04204318v1

Can Language Improve Visual Features For Distinguishing Unseen Plant Diseases?

Jerad Zherui Liaw , Abel Yu Hao Chai , Sue Han Lee , Pierre Bonnet , Alexis Joly

ICPR 2024 - 27th International Conference on Pattern Recognition, Dec 2024, Kolkata, India. pp.296-311, ⟨10.1007/978-3-031-78113-1_20⟩

Communication dans un congrès hal-04851648v1
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The point is the mask: scaling coral reef segmentation with weak supervision

Matteo Contini , Victor Illien , Sylvain Poulain , Serge Bernard , Julien Barde et al.

ICCV 2025 - Joint Workshop on Marine Vision, Oct 2025, Honolulu, Hawaii, United States

Communication dans un congrès hal-05457113v1
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Mapping biodiversity at very-high resolution in Europe

César Leblanc , Lukáš Picek , Benjamin Deneu , Pierre Bonnet , Maximilien Servajean et al.

CVPRW 2025 - IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, IEEE; CVF, Jun 2025, Nashville, United States. pp.2340-2349, ⟨10.1109/CVPRW67362.2025.00221⟩

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Overview of GeoLifeCLEF 2025: Plant Species Presence Prediction with Environmental and High-resolution Remote Sensing Data

Lukáš Picek , César Leblanc , Théo Larcher , Maximilien Servajean , Pierre Bonnet et al.

CLEF 2025 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2025, Madrid, Spain. pp.2932-2941

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Deep-Plant-Disease Dataset Is All You Need for Plant Disease Identification

Abel Yu Hao Chai , Kelly Li Zhen Jee , Sue Han Lee , Fei Siang Tay , Jules Vandeputte et al.

33rd ACM International Conference on Multimedia (ACM MM 2025), Association for Computing Machinery (ACM), Oct 2025, Dublin, Ireland. pp.12578-12584, ⟨10.1145/3746027.3758192⟩

Communication dans un congrès hal-05340010v1
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GeoPlant: Spatial Plant Species Prediction Dataset

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.

38. Conference on Neural Information Processing Systems, NeurIPS 2024, Dec 2024, Vancouver, Canada

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Overview of GeoLifeCLEF 2024: Species Composition Prediction with High Spatial Resolution at Continental Scale using Remote Sensing

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.

15. Conference and Labs of the Evaluation Forum (CLEF 2024), Sep 2024, Grenoble, France. pp.1966-1977

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Overview of BirdCLEF 2024: Acoustic Identification of Under-studied Bird Species in the Western Ghats

Stefan Kahl , Tom Denton , Holger Klinck , Vijay Ramesh , Viral Joshi et al.

15. Conference and Labs of the Evaluation Forum (CLEF 2024), Sep 2024, Grenoble, France. pp.1948-1957

Communication dans un congrès hal-04719578v1
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Overview of PlantCLEF 2024: multi-species plant identification in vegetation plot images

Hervé Goëau , Vincent Espitalier , Pierre Bonnet , Alexis Joly

15. Conference and Labs of the Evaluation Forum (CLEF 2024), Guglielmo Faggioli; Nicola Ferro; Petra Galuščáková; Alba García Seco de Herrera, Sep 2024, Grenoble, France. pp.1978-1988

Communication dans un congrès hal-04806900v1
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Overview of LifeCLEF 2024 Teaser : Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.

ECIR 2024 - 46. European Conference on Information Retrieval, Mar 2024, Glasgow, United Kingdom. pp.19-27, ⟨10.1007/978-3-031-56072-9_3⟩

Communication dans un congrès hal-04667635v1
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Weighted majority vote using Shapley values in crowdsourcing

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon

CAp-RFIAP 2024 - Conférences jointes sur l'Apprentissage automatique et la Reconnaissance des Formes, l’Image, l’Apprentissage, la Perception, Jul 2024, Lille, France

Communication dans un congrès hal-04573727v1
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Cooperative learning of Pl@ntNet’s Artificial Intelligence algorithm using label aggregation

Tanguy Lefort , Antoine Affouard , Pierre Bonnet , Benjamin Charlier , Alexis Joly et al.

55. Journées de Statistique de la SFdS (JdS 2024), Société Française de Statistique, May 2024, Bordeaux, France. pp.35-44

Communication dans un congrès hal-04574223v1
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Overview of LifeCLEF 2024: Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.

15. Conference and Labs of the Evaluation Forum (CLEF 2024), Sep 2024, Grenoble, France. pp.183-207, ⟨10.1007/978-3-031-71908-0_9⟩

Communication dans un congrès hal-04830385v1
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Biodiversity Data Cubes for Cross-Cutting Science and Policy

Lina M Estupinan Suarez , Laura Abraham , Tim Adriaens , Lissa Breugelmans , David A Clarke et al.

EGU 2024 - General Assembly of European Geosciences Union, Apr 2024, Vienna, Austria. ⟨10.5194/egusphere-egu24-6353⟩

Communication dans un congrès lirmm-04834859v1

Pairwise Feature Learning for Unseen Plant Disease Recognition

Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Yi Lung Then , Hervé Goëau et al.

ICIP 2023 - 30. IEEE International Conference on Image Processing, Thie Institute of Electrical and Electronics Engineers; Signal Processing Society, Oct 2023, Kuala Lumpur, Malaysia. pp.306-310, ⟨10.1109/ICIP49359.2023.10222401⟩

Communication dans un congrès hal-04214623v1
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LifeCLEF 2023 teaser: Species Identification and Prediction Challenges

Alexis Joly , Stefan Kahl , Lukáš Picek , Christophe Botella , Diego Marcos et al.

ECIR 2023 - 45. European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩

Communication dans un congrès hal-04204378v1
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Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi

Alexis Joly , Christophe Botella , Lukáš Picek , Stefan Kahl , Hervé Goëau et al.

24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Sep 2023, Thessaloniki, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩

Communication dans un congrès hal-04322219v1
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Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale

Hervé Goëau , Pierre Bonnet , Alexis Joly

24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Mohammad Aliannejadi; Guglielmo Faggioli; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessaloniki, Greece. pp.1972-1981

Communication dans un congrès hal-04345310v1
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Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing

Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Théo Larcher et al.

24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Sep 2023, Thessaloniki, Greece. pp.1954-1971

Communication dans un congrès hal-04322255v1
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Overview of BirdCLEF 2023: Automated Bird Species Identification in Eastern Africa

Stefan Kahl , Tom Denton , Holger Klinck , Hendrik Reers , Francis Cherutich et al.

24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Mohammad Aliannejadi; Guglielmo Faggiol; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessaloniki, Greece. pp.1934-1942

Communication dans un congrès hal-04345437v1
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Weighting Areas Under the Margin in crowdsourced datasets

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon

JDS 2023 - 54es Journées de Statistique, Société Française de Statistique (SFdS), Jul 2023, Bruxelles, Belgium

Communication dans un congrès hal-04562515v1
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Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings

Stefan Kahl , Amanda Navine , Tom Denton , Holger Klinck , Patrick Hart et al.

CLEF 2022 Working Notes - 23. Conference and Labs of the Evaluation Forum, Sep 2022, Bologna, Italy. pp.1929-1939

Communication dans un congrès hal-03791428v1

Overview of LifeCLEF 2022: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.

CLEF 2022 - 13. International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2022, Bologna, Italy. pp.257-285, ⟨10.1007/978-3-031-13643-6_19⟩

Communication dans un congrès hal-03807746v1
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Species Distribution Modeling based on aerial images and environmental features with Convolutional Neural Networks

César Leblanc , Alexis Joly , Titouan Lorieul , Maximilien Servajean , Pierre Bonnet

CLEF 2022 Working Notes - 23. Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Allan Hanbury; Martin Potthast, Sep 2022, Bologna, Italy. pp.2123-2150

Communication dans un congrès hal-03817452v1
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Overview of PlantCLEF 2022: Image-based plant identification at global scale

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF 2022 Working Notes - 23. Conference and Labs of the Evaluation Forum, Sep 2022, Bologna, Italy. pp.1916-1928

Communication dans un congrès lirmm-03793591v1
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Crowdsourcing label noise simulation on image classification tasks

Tanguy Lefort , Benjamin Charlier , Alexis Joly , Joseph Salmon

JDS 2022 - 53es Journées de Statistique, Jun 2022, Lyon, France. pp.1063-1065

Communication dans un congrès hal-04562503v1
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Stochastic smoothing of the top-K calibrated hinge loss for deep imbalanced classification

Camille Garcin , Maximilien Servajean , Alexis Joly , Joseph Salmon

ICML 2022 - 39th International Conference on Machine Learning, Jul 2022, Baltimore, United States. pp.7208-7222

Communication dans un congrès hal-03828747v1
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LifeCLEF 2022 Teaser: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.

ECIR 2022 - 44. European Conference on Information Retrieval Research, Apr 2022, Stavanger, Norway. pp.390-399, ⟨10.1007/978-3-030-99739-7_49⟩

Communication dans un congrès hal-03641389v1
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Integrating Citizen Observatories into School Environmental Education for Sustainability: Design and Evaluation of a Case Study Engaging Students with Pl@Ntnet and Odourcollect

Maria Daskolia , Matrona Pappa , Alexis Joly , Pierre Bonnet , Rosa Arias et al.

ICERI 2022 - 15. International Conference of Education, Research and Innovation, Nov 2022, Sevilla, Spain. pp.5479-5489, ⟨10.21125/iceri.2022.1345⟩

Communication dans un congrès hal-04613924v1
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Overview of GeoLifeCLEF 2022: Predicting species presence from multi-modal remote sensing, bioclimatic and pedologic data

Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet et al.

CLEF 2022 Working Notes - 23. Conference and Labs of the Evaluation Forum, Sep 2022, Bologna, Italy. pp.1940-1956

Communication dans un congrès lirmm-03793595v1
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How Do Deep Convolutional SDM Trained on Satellite Images Unravel Vegetation Ecology ?

Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz

ICPR 2020 - 25th International Conference on Pattern Recognition, Alberto Del Bimbo; Rita Cucchiara; Stan Sclaroff; Giovanni Maria Farinella; Tao Mei; Marco Bertini; Hugo Jair Escalante; Roberto Vezzani, Jan 2021, Online, Italy. pp.148-158, ⟨10.1007/978-3-030-68780-9_15⟩

Communication dans un congrès hal-03167637v1
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Pl@ntNet-300K: a plant image dataset with high label ambiguity and a long-tailed distribution

Camille Garcin , Alexis Joly , Pierre Bonnet , Jean-Christophe Lombardo , Antoine Affouard et al.

NeurIPS 2021 - 35th Conference on Neural Information Processing Systems, Dec 2021, Virtual Conference, France. ⟨10.5281/zenodo.5645731⟩

Communication dans un congrès hal-03474556v2

Pl@ntNet, la science des données au service de la biodiversité végétale

Alexis Joly

EGC 2021 - 21e Conférence Extraction et Gestion des Connaissances, Jan 2021, Montpellier, France. pp.5-6

Communication dans un congrès lirmm-03965364v1
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Overview of PlantCLEF 2021: cross-domain plant identification

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF 2021 Working Notes - 22nd Conference and Labs of the Evaluation Forum, Sep 2021, Bucarest, Romania. pp.1422-1436

Communication dans un congrès hal-03353469v1
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Overview of LifeCLEF 2021: an evaluation of Machine-Learning based Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul et al.

CLEF 2021 - 12th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2021, Online, France. pp.371-393, ⟨10.1007/978-3-030-85251-1_24⟩

Communication dans un congrès hal-03415990v1

WeedElec: a robotic research platform for individual weed detection and selective electrical weeding

Florent Abdelghafour , Florian Rançon , Shiyu Liu , Julien Champ , Vincent de Rudnicki et al.

13. European Conference on Precision Agriculture (ECPA 2021), Jul 2021, Budapest, Hungary. pp.695-702, ⟨10.3920/978-90-8686-916-9_83⟩

Communication dans un congrès hal-03325689v1
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Overview of GeoLifeCLEF 2021: Predicting species distribution from 2 million remote sensing images

Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet et al.

CLEF 2021 Working Notes - 22nd Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Alexis Joly; Maria Maistro; Florina Piroi, Sep 2021, Bucarest, Romania. pp.1451-1462, ⟨10.1109/ICPR48806.2021.9412643⟩

Communication dans un congrès hal-03353487v1
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Conditional Multi-Task learning for Plant Disease Identification

Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly

ICPR 2020 - 25th International Conference on Pattern Recognition, The International Association for Pattern Recognition (IAPR); ICPR2020 Organizing committee, Jan 2021, Milan, Italy. pp.3320-3327, ⟨10.1109/ICPR48806.2021.9412643⟩

Communication dans un congrès hal-03415972v1
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Reproducible Performance Optimization of Complex Applications on the Edge-to-Cloud Continuum

Daniel Rosendo , Alexandru Costan , Gabriel Antoniu , Matthieu Simonin , Jean-Christophe Lombardo et al.

Cluster 2021 - IEEE International Conference on Cluster Computing, Sep 2021, Portland, OR, United States. pp.23-34, ⟨10.1109/Cluster48925.2021.00043⟩

Communication dans un congrès hal-03310540v1
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Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF)

Benjamin Deneu , Titouan Lorieul , Elijah Cole , Maximilien Servajean , Christophe Botella et al.

CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece

Communication dans un congrès hal-02989077v1
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Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Benjamin Deneu , Willem-Pier Vellinga et al.

CLEF 2020 - 11. International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩

Communication dans un congrès hal-02945382v1
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Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments

Stefan Kahl , Mary Clapp , W Alexander Hopping , Hervé Goëau , Hervé Glotin et al.

CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece

Communication dans un congrès hal-02989101v1
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LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Rafael Ruiz de Castaneda , Hervé Glotin et al.

ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisboa, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩

Communication dans un congrès hal-02873670v1
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Overview of LifeCLEF Plant Identification task 2020

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF 2020 - Conference and Labs of the Evaluation Forum, The CLEF Initiative, Sep 2020, Thessaloniki, Greece

Communication dans un congrès hal-02980085v1
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Location-Based Plant Species Prediction Using A CNN Model Trained On Several Kingdoms - Best Method Of GeoLifeCLEF 2019 Challenge

Mathilde Negri , Maximilien Servajean , Benjamin Deneu , Alexis Joly

CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland

Communication dans un congrès hal-02392637v1
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Overview of LifeCLEF Plant Identification Task 2019: diving into Data Deficient Tropical Countries

Hervé Goëau , Pierre Bonnet , Alexis Joly

Conference and Labs of the Evaluation Forum (CLEF 2019), Linda Cappellato; Nicola Ferro; David E. Losada; Henning Müller, Sep 2019, Lugano, Switzerland

Communication dans un congrès hal-02283184v1
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Overview of BirdCLEF 2019: Large-Scale Bird Recognition in Soundscapes

Stefan Kahl , Fabian-Robert Stöter , Hervé Goëau , Hervé Glotin , Robert Planque et al.

CLEF 2019 - Conference and Labs of the Evaluation Forum, Cappellato, L.; Ferro, N.; Losada, D. E.; Müller, H., Sep 2019, Lugano, Switzerland

Communication dans un congrès hal-02345644v1
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Overview of LifeCLEF 2019: Identification of Amazonian Plants, South &amp; North American Birds, and Niche Prediction

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Maximilien Servajean et al.

CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩

Communication dans un congrès hal-02281455v1
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Vers un désenchevêtrement de l'ambiguïté de la tâche et de l'incertitude du modèle pour la classification avec option de rejet à l'aide de réseaux neuronaux

Titouan Lorieul , Alexis Joly

CAP 2019 - 21e PFIA Conférence sur l'Apprentissage Automatique, Jul 2019, Toulouse, France

Communication dans un congrès hal-02421210v1
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Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences

Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly

Conference and Labs of the Evaluation Forum (CLEF 2019), Sep 2019, Lugano, Switzerland

Communication dans un congrès hal-02190170v1
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LifeCLEF 2019: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Marion Poupard et al.

ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩

Communication dans un congrès hal-02273257v1
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Evaluation of Deep Species Distribution Models using Environment and Co-occurrences

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly

CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩

Communication dans un congrès hal-02290310v1
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A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez

ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States

Communication dans un congrès hal-03261122v1
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Overview of GeoLifeCLEF 2018: location-based species recommendation

Christophe Botella , Pierre Bonnet , François Munoz , Pascal P. Monestiez , Alexis Joly

CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France

Communication dans un congrès hal-01913238v1
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Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI

Alexis Joly , Hervé Goëau , Christophe Botella , Hervé Glotin , Pierre Bonnet et al.

CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩

Communication dans un congrès hal-01913231v1
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Overview of ExpertLifeCLEF 2018: how far automated identification systems are from the best experts?

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France

Communication dans un congrès hal-01913244v1
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Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly

CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France

Communication dans un congrès hal-01913241v1
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Overview of BirdCLEF 2018: monospecies vs. soundscape bird identification

Hervé Goëau , Stefan Kahl , Hervé Glotin , Robert Planqué , Willem-Pier Vellinga et al.

CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France

Communication dans un congrès hal-02189229v1

Going deeper in the automated identification of Herbarium specimens

Pierre Bonnet , Alexis Joly , Hervé Goëau , Jean-Christophe Lombardo , Antoine Affouard et al.

Botany - Botanical Crossroads, Jun 2017, Forth Worth, TX, United States

Communication dans un congrès hal-01837387v1
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Pl@ntNet app in the era of deep learning

Antoine Affouard , Hervé Goëau , Pierre Bonnet , Jean-Christophe Lombardo , Alexis Joly

ICLR: International Conference on Learning Representations, Apr 2017, Toulon, France

Communication dans un congrès hal-01629195v1
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Plant identification based on noisy web data: the amazing performance of deep learning (LifeCLEF 2017)

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland

Communication dans un congrès hal-01629183v1
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LifeCLEF 2017 Lab Overview: Multimedia Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.

CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland. pp.255-274, ⟨10.1007/978-3-319-65813-1_24⟩

Communication dans un congrès hal-01629191v1
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LifeCLEF Bird Identification Task 2017

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly

CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland

Communication dans un congrès hal-01629175v1
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Pl@ntNet -My Business

Alexis Joly , Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Hervé Goëau

MM: Multimedia, Oct 2017, Mountain View, United States. pp.1-11

Communication dans un congrès hal-01638263v1
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Automated Herbarium Specimen Identification using Deep Learning

Jose Carranza-Rojas , Alexis Joly , Pierre Bonnet , Hervé Goëau , Erick Mata-Montero

TDWG 2017: Biodiversity Information Standards, Oct 2017, Ottawa, Canada. pp.e20302, ⟨10.3897/tdwgproceedings.1.20302⟩

Communication dans un congrès hal-01629142v1

An image-based Plant identification platform for thousands of species

Pierre Bonnet , Alexis Joly , Julien Champ , Hervé Goëau , Samuel Dufour-Kowalski et al.

ATBC: Association for Tropical Biology and Conservation, Jun 2016, Montpellier, France

Communication dans un congrès hal-01837355v1
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Unsupervised Individual Whales Identification: Spot the Difference in the Ocean

Alexis Joly , Jean-Christophe Lombardo , Julien Champ , Anjara Saloma

Working Notes of CLEF 2016 - Conference and Labs of the Evaluation forum, Sep 2016, Évora, Portugal. pp.469-480

Communication dans un congrès hal-01373777v1
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Plant Identification in an Open-world (LifeCLEF 2016)

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.428-439

Communication dans un congrès hal-01373780v1
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LifeCLEF 2016: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.

CLEF 2016 - 7th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2016, Évora, Portugal. pp.286-310, ⟨10.1007/978-3-319-44564-9_26⟩

Communication dans un congrès hal-01373781v1
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Floristic participation at LifeCLEF 2016 Plant Identification Task

Julien Champ , Hervé Goëau , Alexis Joly

Working Notes of CLEF 2016 - Conference and Labs of the Evaluation forum, Sep 2016, Évora, Portugal. pp.450-458

Communication dans un congrès hal-01373776v1
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ThePlantGame: Actively Training Human Annotators for Domain-specific Crowdsourcing

Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti

MM 2016 - 24th International Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.720-721, ⟨10.1145/2964284.2973820⟩

Communication dans un congrès hal-01373769v1
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Spatially Localized Visual Dictionary Learning

Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez

ICMR: International Conference on Multimedia Retrieval, Jun 2016, New York, United States. pp.367-370, ⟨10.1145/2911996.2912070⟩

Communication dans un congrès hal-01373778v1
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Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sustain our Planet

Alexis Joly , Hervé Goëau , Julien Champ , Samuel Dufour-Kowalski , Henning Müller et al.

MM 2016 - 24th International Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.958-967, ⟨10.1145/2964284.2976762⟩

Communication dans un congrès hal-01373762v1
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LifeCLEF Bird Identification Task 2016: The arrival of Deep learning

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly

CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.440-449

Communication dans un congrès hal-01373779v1
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Pl@ntNet, une plate-forme innovante d'agrégation et partage d'observations botaniques

Daniel Barthélémy , Nozha Boujemaa , Jean-François Molino , Alexis Joly , Hervé Goëau et al.

International Conference ‘Botanists of the Twenty-first Century’, UNESCO, Sep 2014, Paris, France. pp.191-197

Communication dans un congrès hal-01837361v1
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LifeCLEF 2015: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.

CLEF: Cross-Language Evaluation Forum, Université de Toulouse. FRA., Sep 2015, Toulouse, France. pp.462-483, ⟨10.1007/978-3-319-24027-5_46⟩

Communication dans un congrès hal-01182782v1
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A comparative study of fine-grained classification methods in the context of the LifeCLEF plant identification challenge 2015

Julien Champ , Titouan Lorieul , Maximilien Servajean , Alexis Joly

CLEF 2015 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France

Communication dans un congrès hal-01182788v1
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LifeCLEF Plant Identification Task 2015

Hervé Goëau , Pierre Bonnet , Alexis Joly

CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France

Communication dans un congrès hal-01182795v1
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LifeCLEF Bird Identification Task 2015

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber et al.

CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France

Communication dans un congrès hal-01182796v1

Kernelizing Spatially Consistent Visual Matches for Fine-Grained Classification

Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez

ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shangai, China. pp.155-162, ⟨10.1145/2671188.2749328⟩

Communication dans un congrès hal-01145988v1
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DigInPix: Visual Named-Entities Identification in Images and Videos

Pierre Letessier , Nicolas Hervé , Alexis Joly , Hakim Nabi , Mathieu Derval et al.

ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shanghai, China. pp.661-664, ⟨10.1145/2671188.2749369⟩

Communication dans un congrès hal-01182780v1
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Shared nearest neighbors match kernel for bird songs identification -LifeCLEF 2015 challenge

Alexis Joly , Valentin Leveau , Julien Champ , Olivier Buisson

CLEF 2015 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France

Communication dans un congrès hal-01182784v1
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Instance-based Bird Species Identification with Undiscriminant Features Pruning

Alexis Joly , Julien Champ , Olivier Buisson

Working Notes of CLEF 2014 - Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.625-633

Communication dans un congrès hal-01088798v1
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LifeCLEF: Multimedia Life Species Identification

Alexis Joly , Henning Müller , Hervé Goëau , Hervé Glotin , Concetto Spampinato et al.

EMR: Environmental Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.7-13

Communication dans un congrès hal-01088812v1

LifeCLEF 2014: Multimedia Life Species Identification Challenges

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.

CLEF: Cross-Language Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.229-249, ⟨10.1007/978-3-319-11382-1_20⟩

Communication dans un congrès hal-01075770v1
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LifeCLEF Bird Identification Task 2014

Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber et al.

CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.585-597

Communication dans un congrès hal-01088829v1
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Pl@ntNet Mobile 2014: Android port and new features

Hervé Goëau , Pierre Bonnet , Alexis Joly , Antoine Affouard , Vera Bakić et al.

ICMR: International Conference on Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.527-530, ⟨10.1145/2578726.2582618⟩

Communication dans un congrès hal-01088819v1
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Recognizing Thousands of Legal Entities through Instance-based Visual Classification

Valentin Leveau , Alexis Joly , Olivier Buisson , Pierre Letessier , Patrick Valduriez

MM: Conference on Multimedia, Nov 2014, Orlando, FL, United States. pp.1029-1032, ⟨10.1145/2647868.2655038⟩

Communication dans un congrès hal-01077508v1
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PlantNet Participation at LifeCLEF2014 Plant Identification Task

Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Vera Bakić , Anne Verroust-Blondet et al.

CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.724-737

Communication dans un congrès halsde-01064569v1
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PlantRT : a Distributed Recommendation Tool for Citizen Science

Maximilien Servajean , Esther Pacitti , Miguel Liroz-Gistau , Alexis Joly , Julien Champ

BDA: Gestion de Données — Principes, Technologies et Applications, Oct 2014, Autrans, France. pp.48-50

Communication dans un congrès hal-01163819v1
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Fine-grained Visual Faceted Search

Julien Champ , Alexis Joly , Pierre Bonnet

MM 2014 - 22nd ACM International Conference on Multimedia, Nov 2014, Orlando, United States. pp.721-722, ⟨10.1145/2647868.2654875⟩

Communication dans un congrès hal-01088822v1
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LifeCLEF Plant Identification Task 2014

Hervé Goëau , Alexis Joly , Pierre Bonnet , Souheil Selmi , Jean-François Molino et al.

CLEF: Conference and Labs of the Evaluation Forum, University of Scheffield. GBR., Sep 2014, Sheffield, United Kingdom. pp.598-615

Communication dans un congrès halsde-01064599v1
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Small objects query suggestion in a large web-image collection

Pierre Letessier , Nicolas Hervé , Julien Champ , Alexis Joly , Olivier Buisson et al.

MM 2013 - 21st ACM International Conference on Multimedia, Oct 2013, Barcelone, Spain. pp.417-418, ⟨10.1145/2502081.2502248⟩

Communication dans un congrès hal-00908891v1
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OTmedia: The French Transmedia News Observatory

Nicolas Hervé , Marie-Luce Viaud , Jérôme Thievre , Agnès Saulnier , Julien Champ et al.

MM 2013 - 21st ACM International Conference on Multimedia, Oct 2013, Barcelone, Spain. pp.441-442, ⟨10.1145/2502081.2502260⟩

Communication dans un congrès hal-00908925v1
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Collaborative validation of visual data through the Pl@ntNet identification system

Samuel Dufour-Kowalski , Jeremy Salinier , Aurelien Peronnet , Jennifer Carré , Jean-Pascal Milcent et al.

TDWG 2013 - Annual Conference, Oct 2013, Florence, Italy

Communication dans un congrès hal-03885113v1
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The ImageCLEF 2013 Plant Identification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Daniel Barthélémy et al.

CLEF, Sep 2013, Valencia, Spain

Communication dans un congrès hal-00960929v1
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Inria's participation at ImageCLEF 2013 Plant Identification Task

Vera Bakić , Sofiène Mouine , Saloua Ouertani-Litayem , Anne Verroust-Blondet , Itheri Yahiaoui et al.

CLEF (Online Working Notes/Labs/Workshop) 2013, Sep 2013, Valencia, Spain

Communication dans un congrès hal-00874330v1

Imageclef 2013: the vision, the data and the open challenges

Caputo Barbara , Muller Henning , Thomee Bart , Villegas Mauricio , Roberto Paredes et al.

CLEF 2013 - 4th Conference and Labs of the Evaluation Forum : Information Access Evaluation meets Multilinguality, Multimodality, and Visualization, Sep 2013, Valencia, Spain. pp.250-268, ⟨10.1007/978-3-642-40802-1_26⟩

Communication dans un congrès hal-00908881v1

The Imageclef Plant Identification Task 2013

Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Jean-François Molino et al.

MAED: Multimedia Analysis for Ecological Data, Oct 2013, Barcelone, Spain. pp.23-28, ⟨10.1145/2509896.2509902⟩

Communication dans un congrès hal-00908934v1
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Pl@ntNet Mobile App

Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Julien Barbe et al.

MM 2013 - 21st ACM International Conference on Multimedia, Oct 2013, Barcelona, Spain. pp.423-424, ⟨10.1145/2502081.2502251⟩

Communication dans un congrès hal-00908910v1
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Visual-Based Transmedia Events Detection

Alexis Joly , Julien Champ , Pierre Letessier , Nicolas Hervé , Olivier Buisson et al.

MM 2012 - 20th ACM International Conference on Multimedia, ACM, Nov 2012, Nara, Japan. pp.1351-1352, ⟨10.1145/2393347.2396480⟩

Communication dans un congrès hal-00755696v1
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Inria IMEDIA2's Participation at ImageCLEF 2012 Plant Identification Task

Vera Bakić , Itheri Yahiaoui , Sofiène Mouine , Saloua Litayem Ouertani , Wajih Ouertani et al.

CLEF (Online Working Notes/Labs/Workshop) 2012, Sep 2012, Rome, Italy

Communication dans un congrès hal-00744901v1

Scalable Mining of Small Visual Objects

Pierre Letessier , Alexis Joly , Olivier Buisson

MM'12: 20th ACM international conference on Multimedia, Oct 2012, Nara, Japan. pp.599-608

Communication dans un congrès hal-00739735v1
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The ImageCLEF 2012 Plant Identification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Itheri Yahiaoui , Daniel Barthélémy et al.

CLEF'2012: Conference and Labs of the Evaluation Forum, Sep 2012, Rome, Italy

Communication dans un congrès hal-00960918v1

Multi-Organ Plant Identification

Hervé Goëau , Pierre Bonnet , Julien Barbe , Vera Bakić , Alexis Joly et al.

ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.41--44

Communication dans un congrès hal-00739724v1

Distributed approximate KNN Graph construction for high dimensional Data

Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa

BDA 2012 - 28e journées Bases de Donnees Avancées, Oct 2012, Clermont-Ferrand, France

Communication dans un congrès hal-00756624v1

Plant Leaves Morphological Categorization with Shared Nearest Neighbours Clustering

Amel Hamzaoui , Alexis Joly , Nozha Boujemaa

ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.37--40

Communication dans un congrès hal-00739715v1

Distributed KNN-graph approximation via hashing

Riadh Mohamed Trad , Alexis Joly , Boujemaa Nozha

ICMR - International Conference on Multimedia Retrieval - 2012, Jun 2012, Hong-Kong, Hong Kong SAR China. pp.43:1--43:8, ⟨10.1145/2324796.2324847⟩

Communication dans un congrès hal-00739713v1
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Hash-Based Support Vector Machines Approximation for Large Scale Prediction

Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa

BMVC: British Machine Vision Conference, Sep 2012, Surrey, United Kingdom. pp.86.1-86.11

Communication dans un congrès hal-00733912v1

Access to botanical data through multimedia and collaborative retrieval

Jean-François Molino , Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Alexis Joly et al.

Conference on Multilingual and Multimodal Information Access Evaluation (CLEF), Sep 2011, Amsterdam, Netherlands

Communication dans un congrès hal-02804437v1

The Pl@ntnet project: plant computational identification and collaborative information system

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.

IBC 2011 - XVIII International Botanical congress, Jul 2011, Melbourne, Australia

Communication dans un congrès hal-02810776v1
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Interpretable Visual Models for Human Perception-Based Object Retrieval

Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa

ICMR'11 - First ACM International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.21:1--21:8, ⟨10.1145/1991996.1992017⟩

Communication dans un congrès hal-00642232v1
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Large scale visual-based event matching

Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa

ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.53:1--53:7, ⟨10.1145/1991996.1992049⟩

Communication dans un congrès hal-00642210v1
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Visual-based plant species identification from crowdsourced data

Hervé Goëau , Alexis Joly , Souheil Selmi , Pierre Bonnet , Elise Mouysset et al.

MM'11 - ACM Multimedia 2011, Nov 2011, Scottsdale, United States. pp.0-0, ⟨10.1145/2072298.2072472⟩

Communication dans un congrès hal-00642236v1
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Random Maximum Margin Hashing

Alexis Joly , Olivier Buisson

CVPR'11 - IEEE Computer Vision and Pattern Recognition, Jun 2011, Colorado springs, United States. pp.873-880, ⟨10.1109/CVPR.2011.5995709⟩

Communication dans un congrès hal-00642178v1
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The ImageCLEF 2011 plant images classification task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy et al.

ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands

Communication dans un congrès hal-00642197v1

The Pl@ntNet project: Plant Computational Identification and Collaborative Information System

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.

Biosystematics 2011 - Digital identification methods in the digital age - morphological and molecular, computer-aided and fully automated, research and citizen science, Feb 2011, Berlin, Germany

Communication dans un congrès hal-02808663v1
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The CLEF 2011 Plant Images Classification Task

Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy et al.

ImageCLEF 2011, Vivien Petras; Pamela Forner; Paul Clough; Nicola Ferro, Sep 2011, Amsterdam, Netherlands

Communication dans un congrès hal-03778869v1

The Pl@ntnet project: plant computational identification and collaborative information system

Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly et al.

IBC2011. XVIII International Botanical Congress, Jul 2011, Melbourne, Australia

Communication dans un congrès hal-03776985v1
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Consistent Visual Words Mining with Adaptive Sampling

Pierre Letessier , Olivier Buisson , Alexis Joly

ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.0-0, ⟨10.1145/1991996.1992045⟩

Communication dans un congrès hal-00642202v1
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Participation of INRIA & Pl@ntNet to ImageCLEF 2011 plant images classification task

Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Pierre Bonnet , Elise Mouysset

ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands. pp.0-0

Communication dans un congrès hal-00642239v1
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Interactive Objects Retrieval with Efficient Boosting

Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa

MM'09 - Proceedings of the 17th ACM international conference on Multimedia, Oct 2009, Beijing, China. pp.545--548, ⟨10.1145/1631272.1631352⟩

Communication dans un congrès hal-00724876v1

A posteriori multi-probe locality sensitive hashing

Alexis Joly , Olivier Buisson

MM08: ACM Multimedia Conference 2008, Oct 2008, Vancouver British Columbia Canada, France. pp.209-218, ⟨10.1145/1459359.1459388⟩

Communication dans un congrès hal-05447433v1

Video copy detection

Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson et al.

ACM International Conference on Image and Video Retrieval (CIVR’07), Jul 2007, Amsterdam, Netherlands. pp.371-378, ⟨10.1145/1282280.1282336⟩

Communication dans un congrès hal-02338328v1
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Video Copy Detection: a Comparative Study

Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson et al.

CIVR 2007, Jul 2007, Amsterdam, France

Communication dans un congrès hal-02420846v1

Overview of LifeCLEF 2025: Challenges on Species Presence Prediction and Identification, and Individual Animal Identification

Lukáš Picek , Stefan Kahl , Hervé Goëau , Lukáš Adam , Théo Larcher et al.

Experimental IR Meets Multilinguality, Multimodality, and Interaction: 16th International Conference of the CLEF Association, CLEF 2025, 16089, Springer Nature Switzerland, pp.338-362, 2026, Lecture Notes in Computer Science, 978-3-032-04353-5. ⟨10.1007/978-3-032-04354-2_19⟩

Chapitre d'ouvrage hal-05408591v1
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Citizen scientists contribution to monitor Asian biodiversity: a case study on flora of Peninsula Malaysia

Sue Han Lee , Hervé Goëau , Alexis Joly , Simying Ong , Yuen Peng Loh et al.

Julien Claude; Noppadon Kitana. On the Edge of the Sixth Mass Extinction in Biodiversity Hotspots: Facts, needs, solutions and opportunities in Thailand and adjacent countries, CU press, pp.139-160, 2024

Chapitre d'ouvrage hal-04970397v1
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Advancing the productivity of science with citizen science and artificial intelligence

Luigi Ceccaroni , J L Oliver , Erin Roger , James Bibby , Paul Flemons et al.

OECD iLibrary. Artificial Intelligence in Science: Challenges, Opportunities and the Future of Research, , 2023, 9789264446212. ⟨10.1787/69563b12-en⟩

Chapitre d'ouvrage hal-04204315v1
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Biodiversity Information Retrieval Through Large Scale Content-Based Identification: A Long-Term Evaluation

Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet et al.

Nicola Ferro; Carol Peters. Information Retrieval Evaluation in a Changing World: Lessons Learned from 20 Years of CLEF, 41, Springer, pp.389-413, 2019, The Information Retrieval Series, 978-3-030-22948-1. ⟨10.1007/978-3-030-22948-1_16⟩

Chapitre d'ouvrage hal-02273280v1
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A deep learning approach to Species Distribution Modelling

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal Monestiez , François Munoz

Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩

Chapitre d'ouvrage hal-01834227v1
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Plant Identification: Experts vs. Machines in the Era of Deep Learning

Pierre Bonnet , Hervé Goëau , Siang Thye Hang , Mario Lasseck , Milaň Sulc et al.

Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Chapter 8, Editions Springer, pp.131-149, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_8⟩

Chapitre d'ouvrage hal-01913277v1

Multimedia Tools and Applications for Environmental & Biodiversity Informatics - Preface

Alexis Joly , Pierre Bonnet , Stefanos Vrochidis , Kostas Karatzas , Ari Karppinen

Joly A.; Vrochidis S.; Karatzas K.; Karppinen A.; Bonnet P. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.1-7, 2018, Multimedia Systems and Applications (MMSA), 978-3-319-76445-0; 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_1⟩

Chapitre d'ouvrage hal-02786879v1
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Automated identification of herbarium specimens at different taxonomic levels

Jose Carranza-Rojas , Alexis Joly , Hervé Goëau , Erick Mata-Montero , Pierre Bonnet

Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Multimedia Systems and Applications, Editions Springer, pp.151-167, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_9⟩

Chapitre d'ouvrage hal-01913272v1
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Weakly supervised segmentation of leaf symptoms in field conditions

Romane Dubois , Lydia Bousset , Melen Leclerc , Nicolas Parisey , Alexis Joly

Workshop Franco-Britannique organisé par le réseau « Modélisation et statistique pour la santé des animaux et des plantes », Oct 2025, Paris, France

Poster de conférence hal-05478330v1
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Pl@ntNet, ten years of automatic plant identification and monitoring

Alexis Joly , Antoine Affouard , Mathias Chouet , Benjamin Deneu , Joaquim Estopinan et al.

IUCN - Congrès mondial de la nature, Sep 2021, Marseille, France.

Poster de conférence hal-03343235v1

Potential and limits of automated plant identification based on visual data, feedbacks from the development of Pl@ntNet initiative

Pierre Bonnet , Alexis Joly , Hervé Goëau , Jean-Christophe Lombardo , Antoine Affouard et al.

Botany 2017, Jun 2017, Forth Worth, TX, United States. , 2017

Poster de conférence hal-01837383v1
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PlantRT : a Distributed and Diversified Recommendation Tool for Citizen Sciences

Maximilien Servajean , Esther Pacitti , Miguel Liroz-Gistau , Alexis Joly , Julien Champ

BDA 2014 - 30e Conférence sur la Gestion de Données — Principes, Technologies et Applications, Oct 2014, Autrans, France. , 2014

Poster de conférence lirmm-01088733v1
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DataManager, un système novateur de gestion et d’échange de données botaniques distribuées

Samuel Dufour-Kowalski , Mathias Chouet , Antoine Affouard , Jean-Pascal Milcent , Grégoire Duché et al.

Quels botanistes pour le 21e siècle ? Métiers, enjeux, opportunités, Sep 2014, Paris, France. , 2014

Poster de conférence hal-01074648v1

Advances in taxonomic identification by image recognition, with the generic content-based image retrieval IKONA

Mathieu Coutaud , Pierre Bonnet , Alexis Joly , Raffi Enficiaud , Nozha Boujemaa et al.

e-Biosphere 09 International Conference on Biodiversity Informatics, Jun 2009, London, United Kingdom. 2009

Poster de conférence hal-02814506v1