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Annegret Kohler

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*Birth date* March 6th 1966, Dudweiler/Saarbruecken Germany *Nationality* German *Marital status* Married Department of Tree-Microbes Interactions Ecogenomics of Interactions Lab Route d’Amance INRAE Centre Grand Est-Nancy; Champenoux, 54280 France Office phone:+33 383394072 Facsimile: +33 383394069 E-mail: annegret.kohler@inrae.fr My research is focused on the biology of trees and the associated forest fungi and their role in forest ecosystems. I’m particularly interested in mycorrhizal symbiosis and in characterizing the molecular mechanisms established during development and functioning of this mutualistic interaction, as well as to understand the evolution of symbiotic fungi from saprotrophic ancestors. I received a PhD in plant physiology and molecular biology at the University of Kaiserslautern/Germany in 1996. During my postdoctoral research I worked on Priming as a mechanism in induced systemic resistance in plants. In 2000 I joined the INRA group, first as a postdoctoral fellow, since 2006 as a permanent staff member. During the last 10 years I was involved in many genomic projects and in particular in charge of the transcriptomic analyses within these projects. I’ve published over 50 scientific papers related to transcriptomics, genomics and tree-microbe interactions ***Education and Training:*** University of Kaiserslautern (Germany) PhD. Plant Biology1996 University of Edinburgh (UK) DAAD exchange visit 1992 University of Kaiserslautern (Germany) M.S. Plant Biology, Biochemistry, Genetics and Biotechnology 1991 University of Kaiserslautern (Germany) B.S. Biology1987 ***Research and Professional Experience:*** 2006-present Researcher (Ingénieur de recherche) at INRAE Centre Grand Est-Nancy, Tree-Microbes Interaction group (IAM) Responsible for the IAM technical platform 2000-2006 Postdoctoral Research Associate at INRA Nancy, France 2000 Postdoctoral Research Associate at CNRS-IBMP, Strasbourg, France 1997 – 2000 Postdoctoral Research Associate in Molecular biology of plants, University of Kaiserslautern, Germany = ·

Publications

Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development

José Eduardo Marqués-Gálvez , Gaurav Pandharikar , Veronica Basso , Annegret Kohler , Nathalie Lackus
New Phytologist, 2024, 242 (2), pp.658-674. ⟨10.1111/nph.19609⟩
Journal articles hal-04693914v1

Sesquiterpenes of the ectomycorrhizal fungus Pisolithus microcarpus alter root growth and promote host colonization

Jonathan Plett , Dominika Wojtalewicz , Krista Plett , Sabrina Collin , Annegret Kohler
Mycorrhiza, 2024, 34 (1-2), pp.69-84. ⟨10.1007/s00572-024-01137-9⟩
Journal articles hal-04644888v1
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Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus

Jonathan M Plett , Shingo Miyauchi , Emmanuelle Morin , Krista Plett , Johanna Wong-Bajracharya
Molecular Biology and Evolution, 2023, 40 (3), pp.msad045. ⟨10.1093/molbev/msad045⟩
Journal articles hal-04143140v1

Functional genomics gives new insights into the ectomycorrhizal degradation of chitin

François Maillard , Annegret Kohler , Emmanuelle Morin , Christian Hossann , Shingo Miyauchi
New Phytologist, 2023, 238 (2), pp.845-858. ⟨10.1111/nph.18773⟩
Journal articles hal-04219917v1

DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus

Julien Vigneaud , Annegret Kohler , Mamadou Dia Sow , Alain Delaunay , Laure Fauchery
New Phytologist, 2023, 238 (6), pp.2561-2577. ⟨10.1111/nph.18734⟩
Journal articles hal-04050258v1

Transcriptome and metabolome analysis reveals stage-specific metabolite accumulation during maturity of Chinese black truffle Tuber indicum

Yang Li , Yong-Mei Xing , Claude Murat , Annegret Kohler , Dong-Yu Zhou
Plant Physiology and Biochemistry, 2023, 205, pp.108158. ⟨10.1016/j.plaphy.2023.108158⟩
Journal articles hal-04593088v1

Ectomycorrhizal symbiosis prepares its host locally and systemically for abiotic cue signaling

Maíra de Freitas Pereira , David Cohen , Lucas Auer , Nathalie Aubry , Marie-Béatrice Bogeat-Triboulot
The Plant Journal, In press, 116 (6), pp.1784-1803. ⟨10.1111/tpj.16465⟩
Journal articles hal-04210267v1

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
Journal articles hal-04033326v1

The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment

Feng Zhang , Aurore Labourel , Mireille Haon , Minna Kemppainen , Emilie da Silva Machado
New Phytologist, 2022, 233 (6), pp.2534-2547. ⟨10.1111/nph.17940⟩
Journal articles hal-03583002v1
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Comparative Transcriptomics Analysis of the Symbiotic Germination of D. officinale (Orchidaceae) With Emphasis on Plant Cell Wall Modification and Cell Wall-Degrading Enzymes

Juan Chen , Yanjing Tang , Annegret Kohler , Annie Lebreton , Yongmei Xing
Frontiers in Plant Science, 2022, 13, pp.880600. ⟨10.3389/fpls.2022.880600⟩
Journal articles hal-04001632v1
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Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun , Annie Lebreton , Jia-Hui Xing , Yu-Xuan Fang , Jing Si
Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩
Journal articles hal-03627194v1
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Molecular basis of differential adventitious rooting competence in poplar genotypes

Alok Ranjan , Irene Perrone , Sanaria Alallaq , Rajesh Singh , Adeline Rigal
Journal of Experimental Botany, 2022, 73 (12), pp.4046-4064. ⟨10.1093/jxb/erac126⟩
Journal articles hal-04220240v1

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula
New Phytologist, 2022, 10 (4), ⟨10.1111/nph.17858⟩
Journal articles hal-03473169v1
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Mycorrhiza‐induced mycocypins of Laccaria bicolor are potent protease inhibitors with nematotoxic and collembola antifeedant activity

Jonathan Plett , Jerica Sabotič , Eva Vogt , Fridtjof Snijders , Annegret Kohler
Environmental Microbiology, 2022, 24 (10), pp.4607-4622. ⟨10.1111/1462-2920.16115⟩
Journal articles hal-04003303v1

Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus

Krista Plett , Annegret Kohler , Teresa Lebel , Vasanth Singan , Diane Bauer
Environmental Microbiology, 2021, 23 (4), pp.2004-2020. ⟨10.1111/1462-2920.15320⟩
Journal articles hal-03250437v1

Contrasting demographic histories revealed in two invasive populations of the dry rot fungus Serpula lacrymans

Inger Skrede , Jaqueline Hess , Sundy Maurice , Jørn Henrik Sønstebø , Annegret Kohler
Molecular Ecology, 2021, 30 (12), pp.2772-2789. ⟨10.1111/mec.15934​⟩
Journal articles hal-03609969v1
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Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle

José Eduardo Marqués‐gálvez , Shingo Miyauchi , Francesco Paolocci , Alfonso Navarro‐ródenas , Francisco Arenas
New Phytologist, 2021, 229 (5), pp.2917-2932. ⟨10.1111/nph.17044⟩
Journal articles hal-03082553v1
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Diversity of Omega Glutathione Transferases in mushroom-forming fungi revealed by phylogenetic, transcriptomic, biochemical and structural approaches

Thomas Perrot , Mathieu Schwartz , Aurélie Deroy , Jean-Michel Girardet , Annegret Kohler
Fungal Genetics and Biology, 2021, 148, pp.103506. ⟨10.1016/j.fgb.2020.103506⟩
Journal articles hal-03143927v1
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Genetic determinants of endophytism in the Arabidopsis root mycobiome

Fantin Mesny , Shingo Miyauchi , Thorsten Thiergart , Brigitte Pickel , Lea Atanasova
Nature Communications, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩
Journal articles hal-03508738v1
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Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee

Emmanuelle Morin , Claude Murat , Nicolas Cichocki , Herminia de La Varga , Annegret Kohler
Microbiology Resource Announcements, 2021, 10 (4), ⟨10.1128/MRA.00799-20⟩
Journal articles hal-03324444v1

Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum

B. Dauphin , Maíra Freitas Pereira , Annegret Kohler , Igor Grigoriev , Kerrie Barry
Environmental Microbiology, 2021, 23 (11), pp.6536-6556. ⟨10.1111/1462-2920.15752⟩
Journal articles hal-03610260v1

Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems

Annie Lebreton , Qingchao Zeng , Shingo Miyauchi , Annegret Kohler , Yu-Cheng Dai
Annual Review of Ecology, Evolution, and Systematics, 2021, 52 (1), pp.385-404. ⟨10.1146/annurev-ecolsys-012021-114902⟩
Journal articles hal-03606245v1
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Molecular Changes Concomitant with Vascular System Development in Mature Galls Induced by Root-Knot Nematodes in the Model Tree Host Populus tremula × P. alba

Fabien Baldacci-Cresp , Marc Behr , Annegret Kohler , Nelly Badalato , Kris Morreel
International Journal of Molecular Sciences, 2020, 21 (2), pp.1-20. ⟨10.3390/ijms21020406⟩
Journal articles hal-02913030v1

Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root cells and promotes root colonization

Jonathan Plett , Krista Plett , Johanna Wong‐bajracharya , Maíra Freitas Pereira , Maurício Dutra Costa
New Phytologist, 2020, 228 (2), pp.712-727. ⟨10.1111/nph.16759⟩
Journal articles hal-02990429v1

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots

Veronica Basso , Annegret Kohler , Shingo Miyauchi , Vasanth Singan , Frédéric Guinet
Plant, Cell and Environment, 2020, 43 (4), pp.1047-1068. ⟨10.1111/pce.13702⟩
Journal articles hal-02911824v1
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus

Salvatore Casarrubia , Elena Martino , Stefania Daghino , Annegret Kohler , Emmanuelle Morin
Frontiers in Microbiology, 2020, 11, pp.341. ⟨10.3389/fmicb.2020.00341⟩
Journal articles hal-02905623v1

The small secreted effector protein MiSSP7.6 of Laccaria bicolor is required for the establishment of ectomycorrhizal symbiosis

Heng Kang , Xin Chen , Minna Kemppainen , Alejandro Pardo , Claire Veneault-Fourrey
Environmental Microbiology, 2020, 22 (4), pp.1435-1446. ⟨10.1111/1462-2920.14959⟩
Journal articles hal-02911808v1
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Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and susceptibility to root-knot nematodes

Marc Behr , Fabien Baldacci-Cresp , Annegret Kohler , Kris Morreel , Geert Goeminne
Mycorrhiza, 2020, 30 (5), pp.555-566. ⟨10.1007/s00572-020-00976-6⟩
Journal articles hal-02948350v1
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Target Of Rapamycin pathway in the white-rot fungus Phanerochaete chrysosporium

Duy Vuong Nguyen , Thomas Roret , Antonio Fernandez-Gonzalez , Annegret Kohler , Melanie Morel-Rouhier
PLoS ONE, 2020, 15 (2), pp.e0224776. ⟨10.1371/journal.pone.0224776⟩
Journal articles hal-02797241v1

Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

Florian Barbi , Annegret Kohler , Kerrie Barry , Preetisri Baskaran , Chris Daum
Environmental Microbiology, 2020, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩
Journal articles hal-02612520v1

The mutualism effector MiSSP7 of Laccaria bicolor alters the interactions between the poplar JAZ6 protein and its associated proteins

Yohann Daguerre , Veronica Basso , Sebastian Hartmann-Wittulski , Romain Schellenberger , Laura Meyer
Scientific Reports, 2020, 10 (1), pp.20362. ⟨10.1038/s41598-020-76832-6⟩
Journal articles hal-03250408v1
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩
Journal articles hal-03082507v1
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Broad‐specificity GH131 β‐glucanases are a hallmark of Fungi and Oomycetes that colonise plants

Georgios Anasontzis , Marc-Henri Lebrun , Mireille Haon , Charlotte Champion , Annegret Kohler
Environmental Microbiology, 2019, ⟨10.1111/1462-2920.14596⟩
Journal articles hal-02111203v1
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SlZRT2 Encodes a ZIP Family Zn Transporter With Dual Localization in the Ectomycorrhizal Fungus Suillus luteus

Laura Coninx , Nick Smisdom , Annegret Kohler , Natascha Arnauts , Marcel Ameloot
Frontiers in Microbiology, 2019, ⟨10.3389/fmicb.2019.02251⟩
Journal articles hal-02901002v1

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

Hao Tan , Annegret Kohler , Renyun Miao , Tianhai Liu , Qiang Zhang
Environmental Microbiology, 2019, 21 (10), pp.3909-3926. ⟨10.1111/1462-2920.14741⟩
Journal articles hal-02311393v1
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The genomic tool-kit of the truffle Tuber melanosporum programmed cell death

Osvaldo Zarivi , Patrizia Cesare , Anna Maria Poma , Sabrina Colafarina , Antonella Bonfigli
Cell Death Discovery, 2018, 4, pp.1-12. ⟨10.1038/s41420-017-0019-0⟩
Journal articles hal-02175590v1

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

Elena Martino , Emmanuelle Morin , Gwen-Aëlle Grelet , Alan Kuo , Annegret Kohler
New Phytologist, 2018, 217 (3), pp.1213-1229. ⟨10.1111/nph.14974⟩
Journal articles hal-02080038v1

Oak extractive-induced stress reveals the involvement of new enzymes in the early detoxification response of Phanerochaete chrysosporium

Antonio José Fernández-González , Nicolas Valette , Annegret Kohler , Stéphane Dumarçay , Rodnay Sormani
Environmental Microbiology, 2018, 20 (10), pp.3890-3901. ⟨10.1111/1462-2920.14409⟩
Journal articles hal-02621597v1
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The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development

Feng Zhang , George Anasontzis , Aurore Labourel , Charlotte Champion , Mireille Haon
New Phytologist, 2018, 220 (4), pp.1309-1321. ⟨10.1111/nph.15113⟩
Journal articles hal-02187791v1
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The Hydrophobin-Like OmSSP1 May Be an Effector in the Ericoid Mycorrhizal Symbiosis

Salvatore Casarrubia , Stefania Daghino , Annegret Kohler , Emmanuelle Morin , Hassine-Radhouane Khouja
Frontiers in Plant Science, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00546⟩
Journal articles hal-01844910v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1

Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes

Chiaki Hori , Jill Gaskell , Dan Cullen , Grzegorz Sabat , Philip E Stewart
Applied and Environmental Microbiology, 2018, 84 (20), pp.1-14. ⟨10.1128/AEM.01133-18⟩
Journal articles hal-01901472v1
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Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Claude Murat , Thibaut Payen , Benjamin Noël , Alan Kuo , Emmanuelle Morin
Nature Ecology & Evolution, 2018, 2 (12), pp.1956-1965. ⟨10.1038/s41559-018-0710-4⟩
Journal articles hal-02094494v1
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Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

Maira de Freitas Pereira , Claire Veneault-Fourrey , Patrice Vion , Frédéric Guinet , Emmanuelle Morin
Frontiers in Microbiology, 2018, 9, pp.1-17. ⟨10.3389/fmicb.2018.00141⟩
Journal articles hal-02627372v1
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Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors

David Lopez , Sébastien Ribeiro , Philippe Label , Boris Fumanal , Jean-Stéphane Venisse
Frontiers in Microbiology, 2018, 9, pp.1-21. ⟨10.3389/fmicb.2018.00276⟩
Journal articles hal-01753929v1
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Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle

Claude Murat-Furminieux , Alan Kuo , Kerrie W Barry , Alicia Clum , Rhyan B Dockter
Genome Announcements, 2018, 6 (25), ⟨10.1128/genomeA.00537-18⟩
Journal articles hal-02154520v1

Transcriptome analysis of the Populus trichocarpa–Rhizophagus irregularis Mycorrhizal Symbiosis

Silvia Calabrese , Annegret Kohler , Annette Niehl , Claire Veneault-Fourrey , Thomas Boller
Plant and Cell Physiology, 2017, 58 (6), pp.1003-1017. ⟨10.1093/pcp/pcx044⟩
Journal articles hal-01598827v1

The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation

Jeanne Dore , Annegret Kohler , Audrey Dubost , Hope Hundley , Vasanth Singan
Environmental Microbiology, 2017, 19 (3), pp.1338 - 1354. ⟨10.1111/1462-2920.13670⟩
Journal articles hal-01608622v1

Photoreceptors in the dark

Raffaele Gerace , Barbara Montanini , Marco Proietto , Elisabetta Levati , Cristina de Luca
Fungal Biology, 2017, 121 (3), pp.253-263. ⟨10.1016/j.funbio.2016.12.003⟩
Journal articles hal-01568150v1
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Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas

Valeria Fochi , Walter Chitarra , Annegret Kohler , Samuele Voyron , Vasanth R Singan
New Phytologist, 2017, 213 (1), pp.365-379. ⟨10.1111/nph.14279⟩
Journal articles hal-01493087v1
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The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

Maira de Freitas Pereira , André Narvaes da Rocha Campos , Thalita Cardoso Anastacio , Emmanuelle Morin , Sérgio Hermínio Brommonschenkel
BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-3545-5⟩
Journal articles hal-01568134v1

Identification, evolution and functional characterization of two Zn CDF-family transporters of the ectomycorrhizal fungus Suillus luteus

Joske Ruytinx , Laura Coninx , Hoai Nguyen , Nick Smisdom , Emmanuelle Morin
Environmental Microbiology Reports, 2017, 9 (4), pp.419-427. ⟨10.1111/1758-2229.12551⟩
Journal articles hal-01573243v1

Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes

F. Rineau , H. Lmalem , D. Ahren , F. Shah , T. Johansson
Mycorrhiza, 2017, 27 (4), pp.383-396. ⟨10.1007/s00572-016-0758-4⟩
Journal articles hal-01597869v1

iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae)

Juan Chen , Si Si Liu , Annegret Kohler , Bo Yan , Hong Mei Luo
Journal of Proteome Research, 2017, 16 (6), pp.2174-2187. ⟨10.1021/acs.jproteome.6b00999⟩
Journal articles hal-01595729v1
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Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis

Jonathan Michael Plett , Hengfu Yin , Ritesh Mewalal , Rongbin Hu , Ting Li
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-00400-8⟩
Journal articles hal-01568143v1

Le trufficulteur : Un trait d’union indispensable entre trufficulteurs et scientifiques

Aurélie Deveau , Annegret Kohler , François Le Tacon , Francis Martin , Virginie Molinier
Le Trufficulteur Français, 2017, n°100 spécial, pp.9-10
Journal articles hal-02620110v1
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The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus.

Laura Coninx , Anneleen Thoonen , Eli Slenders , Emmanuelle Morin , Natascha Arnauts
Frontiers in Microbiology, 2017, 8, pp.2320. ⟨10.3389/fmicb.2017.02320⟩
Journal articles hal-01683176v1
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Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Yohann Daguerre , E. Levati , Joske Ruytinx , Emilie Tisserant , Emmanuelle Morin
BMC Genomics, 2017, 18 (1), pp.1-23. ⟨10.1186/s12864-017-4114-7⟩
Journal articles hal-01611442v1

Genomic resources notes accepted 1 August 2015 - 31 September 2015

. Genomic Resources Development Consortium , Annegret Kohler , Antoine Kremer , Grégoire G. Le Provost , Isabelle Lesur Kupin Lesur
Molecular Ecology Resources, 2016, 16 (1), pp.377-377. ⟨10.1111/1755-0998.12482⟩
Journal articles hal-02630738v1
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Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

Martina Peter , Annegret Kohler , Robin A. Ohm , Alan Kuo , Jennifer Kruetzmann
Nature Communications, 2016, 7, pp.1-15. ⟨10.1038/ncomms12662⟩
Journal articles hal-01439098v1

Unearthing the roots of ectomycorrhizal symbioses

Francis Martin , Annegret Kohler , Claude Murat , Claire Veneault-Fourrey , David S. Hibbett
Nature Reviews Microbiology, 2016, 14 (12), pp.760-773. ⟨10.1038/nrmicro.2016.149⟩
Journal articles hal-01579569v1

Dominant Tree Species and Soil Type Affect the Fungal Community Structure in a Boreal Peatland Forest

Hui Sun , Eeva Terhonen , Andriy Kovalchuk , Hanna Tuovila , Hongxin Chen
Applied and Environmental Microbiology, 2016, 82 (9), pp.2632-2643. ⟨10.1128/AEM.03858-15⟩
Journal articles hal-01329219v1
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Development of the Poplar-Laccaria bicolor Ectomycorrhiza Modifies Root Auxin Metabolism, Signaling, and Response

Alice Vayssieres , Ales Pěnčík , Judith Felten , Annegret Kohler , Karin Ljung
Plant Physiology, 2015, 169 (1), pp.890-902. ⟨10.1104/pp.114.255620⟩
Journal articles hal-01591778v1

Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome

C. Alisha Quandt , Annegret Kohler , Cedar N. Hesse , Thomas J. Sharpton , Francis Martin
Environmental Microbiology, 2015, 17 (8), pp.2952-2968. ⟨10.1111/1462-2920.12840⟩
Journal articles hal-01269421v1
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Diversity and evolution of ABC proteins in mycorrhiza-forming fungi

Andriy Kovalchuk , Annegret Kohler , Francis Martin , Fred O. Asiegbu
BMC Evolutionary Biology, 2015, 15, ⟨10.1186/s12862-015-0526-7⟩
Journal articles hal-02641380v1

Study of nitrogen and carbon transfer from soil organic matter to Tuber melanosporum mycorrhizas and ascocarps using 15N and 13C soil labelling and wholegenome oligoarrays

François Le Tacon , Bernhard Zeller , Caroline Plain , Christian Hossann , Claude Brechet
Plant and Soil, 2015, 395 (1-2), pp.351-373. ⟨10.1007/s11104-015-2557-7⟩
Journal articles hal-01269283v1

The effect of elevated carbon dioxide on the interaction between Eucalyptus grandis and diverse isolates of Pisolithus sp. is associated with a complex shift in the root transcriptome.

Jonathan M. Plett , Annegret Kohler , Amit Khachane , Kerry Keniry , Krista L Plett
New Phytologist, 2015, 206 (4), pp.1423-1436. ⟨10.1111/nph.13103⟩
Journal articles hal-01269035v1

Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis

Jeanne Dore , Marie Perraud , Cindy Dieryckx , Annegret Kohler , Emmanuelle Morin
New Phytologist, 2015, 208 (4), pp.1169-1187. ⟨10.1111/nph.13546⟩
Journal articles hal-01258333v1

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses

Jonathan Michael Plett , Emilie Tisserant , Annick Brun-Jacob , Emmanuelle Morin , Igor V. Grigoriev
Molecular Plant-Microbe Interactions, 2015, 28 (3), pp.261-273. ⟨10.1094/MPMI-05-14-0129-FI⟩
Journal articles hal-01269457v1

Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry

Jennifer M. Talbot , Francis Martin , Annegret Kohler , Bernard Henrissat , Kabir G. Peay
Soil Biology and Biochemistry, 2015, 88, pp.441-456. ⟨10.1016/j.soilbio.2015.05.006⟩
Journal articles hal-01439021v1

PtaRHE1, a Populus tremula × Populus alba RING-H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development

Fabien Baldacci-Cresp , Jihad Moussawi , Jean-Charles Leplé , Rebecca van den Ackerveken , Annegret Kohler
The Plant Journal, 2015, 82 (6), pp.978-990. ⟨10.1111/tpj.12867⟩
Journal articles hal-01167882v1
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler , Alan Kuo , Laszlo G. Nagy , Emmanuelle Morin , Kerrie W. Barry
Nature Genetics, 2015, 47 (4), pp.410-U176. ⟨10.1038/ng.3223⟩
Journal articles hal-02639336v1
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Transcriptomic responses of phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase

Anne Thuillier , Kamel Chibani , Gemma Belli , Enrique Herrero , Stephane Dumarcay
Applied and Environmental Microbiology, 2014, 80 (20), pp.6316-6327. ⟨10.1128/AEM.02103-14⟩
Journal articles hal-01268964v1

Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic Fungus Laccaria bicolor

Timothy J. Tschaplinski , Jonathan Michael Plett , Nancy L. Engle , Aurélie Deveau , Katherine C. Cushman
Molecular Plant-Microbe Interactions, 2014, 27 (6), pp.546 - 556. ⟨10.1094/MPMI-09-13-0286-R⟩
Journal articles hal-01268595v1
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Expanding genomics of rnycorrhizal symbiosis

Alan Kuo , Annegret Kohler , Francis M. Martin , Igor V. Grigoriev
Frontiers in Microbiology, 2014, 5, pp.1-7. ⟨10.3389/fmicb.2014.00582⟩
Journal articles hal-01268943v1

Effector MiSSP7 of the mutualistic fungus [i]Laccaria[/i] [i]bicolor[/i] stabilizes the [i]Populus[/i] JAZ6 protein and represses jasmonic acid (JA) responsive genes

Jonathan Michael Plett , Yohann Daguerre , Sebastian Wittulsky , Alice Vayssieres , Aurélie Deveau
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (22), pp.8299-8304. ⟨10.1073/pnas.1322671111⟩
Journal articles hal-01268578v1

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots

Jonathan Michael Plett , Amit Khachane , Malika Ouassou , Bjorn Sundberg , Annegret Kohler
New Phytologist, 2014, 202 (1), pp.270-286
Journal articles hal-01268693v1

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Claire Veneault-Fourrey , Carine Commun , Annegret Kohler , Emmanuelle Morin , Raffaella Balestrini
Fungal Genetics and Biology, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩
Journal articles hal-01123254v1

Transcriptomic profiles of [i]Heterobasidion annosum[/i] under abiotic stresses and during saprotrophic growth in bark, sapwood and heartwood

Tommaso Raffaello , Hongxin Chen , Annegret Kohler , Fred O. Asiegbu
Environmental Microbiology, 2014, 16 (6), pp.1654-1667. ⟨10.1111/1462-2920.12321⟩
Journal articles hal-01268770v1

Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments

Stéphane Hacquard , Emilie Tisserant , Annick Brun , Valérie Legué , Francis Martin
Environmental Microbiology, 2013, 15 (6), pp.1853 - 1869. ⟨10.1111/1462-2920.12080⟩
Journal articles hal-01268103v1

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

Emilie Tisserant , Mathilde Malbreil , Alan Kuo , Annegret Kohler , Aikaterini Symeonidi
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (50), pp.20117-20122. ⟨10.1073/pnas.1313452110⟩
Journal articles hal-01578663v1
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Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

Stéphane Hacquard , Christine Delaruelle , Pascal Frey , Emilie Tisserant , Annegret Kohler
Frontiers in Plant Science, 2013, 4, ⟨10.3389/fpls.2013.00456⟩
Journal articles hal-01268532v1

Expression Analysis of the Impact of Culture Filtrates from the Biocontrol Agent, Phlebiopsis gigantea on the Conifer Pathogen, Heterobasidion annosum s.s. Transcriptome

Anthony C. Mgbeahuruike , Annegret Kohler , Frederick O. Asiegbu
Microbial ecology, 2013, 66 (3), pp.669 - 681. ⟨10.1007/s00248-013-0255-7⟩
Journal articles hal-01268296v1

Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (10), pp.4146-4146. ⟨10.1073/pnas.1300201110⟩
Journal articles hal-01268023v1
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Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva , Edita Jurak , Annegret Kohler , Adam Baker , Evy Battaglia
BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-663⟩
Journal articles hal-01268453v1

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson , Andrea Aerts , Fred Asiegbu , Lassaâd Belbahri , Ourdia Bouzid
New Phytologist, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩
Journal articles hal-02649642v1
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The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

Emilie Tisserant , Annegret Kohler , Pascale Dozolme , R. Balestrini , K. Benabdellah
New Phytologist, 2012, 196 (3), pp.755-769. ⟨10.1111/j.1469-8137.2011.03948.x⟩
Journal articles hal-01267801v1

Genome-wide analysis of cell wall-related genes in Tuber melanosporum

Raffaella Balestrini , Fabiano Sillo , Annegret Kohler , Georg Schneider , Antonella Faccio
Current Genetics, 2012, 58 (3), pp.165 - 177. ⟨10.1007/s00294-012-0374-6⟩
Journal articles hal-01268336v1

Self/nonself recognition in Tuber melanosporum is not mediated by a heterokaryon incompatibility system

Mirco Iotti , Andrea Rubini , Emilie Tisserant , Annegret Kohler , Francesco Paolocci
Fungal Biology, 2012, 116 (2), pp.261 - 275. ⟨10.1016/j.funbio.2011.11.009⟩
Journal articles hal-01268411v1

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17501-17506. ⟨10.1073/pnas.1206847109⟩
Journal articles hal-01267851v1
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A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).

Stéphane Hacquard , David L. Joly , Yao-Cheng Lin , Emilie Tisserant , Nicolas Feau
Molecular Plant-Microbe Interactions, 2012, 25 (3), pp.279-293. ⟨10.1094/MPMI-09-11-0238⟩
Journal articles hal-01267890v1

Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor

Jonathan Michael Plett , Julien Gibon , Annegret Kohler , Kecia Duffy , Patrik J. Hoegger
Fungal Genetics and Biology, 2012, 49 (3), pp.199 - 209. ⟨10.1016/j.fgb.2012.01.002⟩
Journal articles hal-01268401v1
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RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

Benjamin Petre , Emmanuelle Morin , Emilie Tisserant , Stéphane Hacquard , Corinne da Silva
PLoS ONE, 2012, 7 (8), pp.1-12. ⟨10.1371/journal.pone.0044408⟩
Journal articles hal-01267887v1

Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor

Delphine D. Vincent , Annegret Kohler , Stéphane Claverol , Emilie Solier , Johann Joets
Journal of Proteome Research, 2012, 11 (1), pp.157-171. ⟨10.1021/pr200895f⟩
Journal articles hal-02646860v1

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas , Manfred Binder , Robert Riley , Kerrie Barry , Robert A. Blanchette
Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Journal articles hal-01268324v1

The AINTEGUMENTA LIKE1 Homeotic Transcription Factor PtAIL1 Controls the Formation of Adventitious Root Primordia in Poplar

Adeline A. Rigal , Yordan S. Y. S. Yordanov , Irene I. Perrone , Anna A. Karlberg , Emilie E. Tisserant
Plant Physiology, 2012, 160 (4), pp.1996 - 2006. ⟨10.1104/pp.112.204453⟩
Journal articles hal-01004111v1
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Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa

Verónica Loth-Pereda , Elena Orsini , Pierre-Emmanuel Courty , Frédéric Lota , Annegret Kohler
Plant Physiology, 2011, 156 (4), pp.2141-2154. ⟨10.1104/pp.111.180646⟩
Journal articles hal-02372457v1

Hyphal and cytoskeleton polarization in Tuber melanosporum: A genomic and cellular analysis

Antonella Amicucci , Raffaella Balestrini , Annegret Kohler , Elena Barbieri , Roberta Saltarelli
Fungal Genetics and Biology, 2011, 48 (6), pp.561 - 572. ⟨10.1016/j.fgb.2010.12.002⟩
Journal articles hal-02644924v1

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome

Emilie Tisserant , C. da Silva , Annegret Kohler , Emmanuelle Morin , Patrick Wincker
New Phytologist, 2011, 189 (3), pp.883-891. ⟨10.1111/j.1469-8137.2010.03597.x⟩
Journal articles hal-02645504v1

Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa

Jessy Labbé , Véronique V. Jorge , Annegret Kohler , Patrice Vion , Benoit Marçais
Tree Genetics and Genomes, 2011, 7 (3), pp.617-627. ⟨10.1007/s11295-010-0361-3⟩
Journal articles hal-02652297v1

Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum

Angelo Bolchi , Roberta Ruotolo , Gessica Marchini , Emanuela Vurro , Luigi Sanita Di Toppi
Fungal Genetics and Biology, 2011, 48 (6), pp.573 - 584. ⟨10.1016/j.fgb.2010.11.003⟩
Journal articles hal-02650565v1

A secreted effector protein of Laccaria bicolor is required for symbiosis development

Jonathan Michael Plett Plett , Minna Kemppainen , Shiv D. Kale , Annegret Kohler , Valérie Legué
Current Biology - CB, 2011, 21 (14), pp.1197-1203. ⟨10.1016/j.cub.2011.05.033⟩
Journal articles hal-02651071v1

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy.

Sébastien Duplessis , Stéphane S. Hacquard , Christine Delaruelle , Emilie Tisserant , Pascal Frey
Molecular Plant-Microbe Interactions, 2011, 24 (7), pp.808-818. ⟨10.1094/MPMI-01-11-0006⟩
Journal articles hal-02650884v1

Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum

Barbara Montanini , Elisabetta Levati , Angelo Bolchi , Annegret Kohler , Emmanuelle Morin
New Phytologist, 2011, 189 (3), pp.736 - 750. ⟨10.1111/j.1469-8137.2010.03525.x⟩
Journal articles hal-02652250v1

The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity

Elisa Zampieri , Raffaella Balestrini , Annegret Kohler , Simona Abbà , Francis Martin
Fungal Genetics and Biology, 2011, 48 (6), pp.585 - 591. ⟨10.1016/j.fgb.2010.09.007⟩
Journal articles hal-02644923v1
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis , Christina A C. A. Cuomo , Yao-Cheng Y.-C. Lin , Andrea Aerts , Emilie Tisserant
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩
Journal articles hal-01000169v1

Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots

Pierre-Emmanuel Courty , Jessy Labbe , Annegret Kohler , Benoit Marçais , Catherine Bastien
Journal of Experimental Botany, 2011, 62 (1), pp.249-260
Journal articles hal-02649491v1

Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa

Veronica Loth-Pereda , Elena Orsini , Pierre-Emmanuel Courty , Frederic Lota , Annegret Kohler
Annual review of plant physiology, 2011, 156 (4), pp.2141-2154. ⟨10.1104/pp.111.180646⟩
Journal articles hal-00825170v1

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

Daniel C. Eastwood , Dimitrios Floudas , Manfred Binder , Andrzej Majcherczyk , Patrick Schneider
Science, 2011, 333 (6043), pp.762 - 765. ⟨10.1126/science.1205411⟩
Journal articles hal-02647602v1

Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum

P. Ceccaroli , M. Buffalini , R. Saltarelli , E. Barbieri , E. Polidori
New Phytologist, 2011, 189 (3), pp.751 - 764. ⟨10.1111/j.1469-8137.2010.03520.x⟩
Journal articles hal-02643838v1

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation

Stéphane S. Hacquard , Christine Delaruelle , Valérie Legué , Emilie Tisserant , Annegret Kohler
Molecular Plant-Microbe Interactions, 2010, 23 (10), pp.1275-1286. ⟨10.1094/MPMI-05-10-0111⟩
Journal articles hal-02667759v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin , Annegret Kohler , Claude Murat , Raffaella Balestrini , Pedro M Coutinho
Nature, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩
Journal articles cea-00907731v1
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Development and validation of an oligonucleotide microarray to characterise ectomycorrhizal fungal communities

Marlis Reich , Annegret Kohler , Francis Martin , Marc Buée
BMC Microbiology, 2009, 9 (241), 11 p. ⟨10.1186/1471-2180-9-241⟩
Journal articles hal-02655506v1

Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor – evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases

Balaji Rajashekar , Annegret Kohler , Tomas Johansson , Francis Martin , Anders Tunlid
New Phytologist, 2009, 183 (2), pp.365-379. ⟨10.1111/j.1469-8137.2009.02860.x⟩
Journal articles hal-02662077v1

Gene expression analysis of Populus deltoides roots subjected to copper stress

Fernando Guerra , Sébastien Duplessis , Annegret Kohler , Francis Martin , Jaime Tapia
Environmental and Experimental Botany, 2009, 67 (2), pp.335-344. ⟨10.1016/j.envexpbot.2009.08.004⟩
Journal articles hal-02655593v1

Phylogenetic analysis, genomic organization, and expression analysis of multi-copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor

Pierre-Emmanuel Courty , P.J. Hoegger , S. Kilaru , Annegret Kohler , Marc Buée
New Phytologist, 2009, 182 (3), pp.736-750. ⟨10.1111/j.1469-8137.2009.02774.x⟩
Journal articles hal-02667828v1

The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and arabidopsis through auxin transport and signaling

Judith Felten , Annegret Kohler , Emmanuelle Morin , Rishikesh P. Bhalerao , Klaus Palme
Plant Physiology, 2009, 151 (4), pp.1991-2005. ⟨10.1104/pp.109.147231⟩
Journal articles hal-02667577v1

Fatty acid metabolism in the ectomycorrhizal fungus Laccaria bicolor

Marlis Reich , Cornelia Göbel , Annegret Kohler , Marc Buée , Francis Martin
New Phytologist, 2009, 182 (4), pp.950-964. ⟨10.1111/j.1469-8137.2009.02819.x⟩
Journal articles hal-02666947v1

A gene repertoire for nitrogen transporters in Laccaria bicolor

Eva Lucic , Claire Veneault-Fourrey , Annegret Kohler , Francis Martin , Michel M. Chalot
New Phytologist, 2008, 180 (2), pp.343-364. ⟨10.1111/j.1469-8137.2008.02580.x⟩
Journal articles hal-02659013v1

Genome-wide identification of NBS resistance genes in Populus trichocarpa

Annegret Kohler , Cécile Rinaldi , Sébastien Duplessis , Marie Baucher , Danny Geelen
Plant Molecular Biology, 2008, 66 (6), pp.619-636. ⟨10.1007/s11103-008-9293-9⟩
Journal articles hal-02669184v1