Audrey Bihouée

24
Documents
Affiliation actuelle
  • ITX-lab unité de recherche de l'institut du thorax UMR1087 UMR6291 (ITX-lab)
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Publications

Publications

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HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures

Louis Paré , Philippe Bordron , Laurent David , Maxime Mahé , Audrey Bihouée et al.

Bioinformatics, 2025, 41 (8), pp.btaf448. ⟨10.1093/bioinformatics/btaf448⟩

Article dans une revue hal-05232371v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics

Benjamin Churcheward , Maxime Millet , Audrey Bihouée , Guillaume Fertin , Samuel Chaffron

mSystems, 2022, 7 (4), ⟨10.1128/msystems.00432-22⟩

Article dans une revue hal-03781944v1
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Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification

Dimitri Meistermann , Alexandre Bruneau , Sophie Loubersac , Arnaud Reignier , Julie Firmin et al.

Cell Stem Cell, 2021, 28 (9), pp.1625-1640.e6. ⟨10.1016/j.stem.2021.04.027⟩

Article dans une revue hal-04077075v1
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Gap-134, a Connexin43 activator, prevents age-related development of ventricular fibrosis in Scn5a− mice

Justine Patin , Claire Castro , Marja Steenman , Agnès Hivonnait , Agnès Carcouët et al.

Pharmacological Research, 2020, 159, pp.104922. ⟨10.1016/j.phrs.2020.104922⟩

Article dans une revue hal-03086843v1

Complex Compound Inheritance of Lethal Lung Developmental Disorders Due to Disruption of the TBX-FGF Pathway

Justyna Karolak , Marie Vincent , Gail Deutsch , Tomasz Gambin , Benjamin Cogné et al.

American Journal of Human Genetics, 2019, 104 (2), pp.213-228. ⟨10.1016/j.ajhg.2018.12.010⟩

Article dans une revue hal-02461467v1
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Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

Dinka Mandakovic , Claudia Rojas , Jonathan Maldonado , Mauricio Latorre , Dante Travisany et al.

Scientific Reports, 2018, 8 (1), pp.5875. ⟨10.1038/s41598-018-23931-0⟩

Article dans une revue hal-01774624v1
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Parallel derivation of isogenic human primed and naive induced pluripotent stem cells

Stéphanie Kilens , Dimitri Meistermann , Diego Moreno , Caroline Chariau , Anne Gaignerie et al.

Nature Communications, 2018, 9 (1), pp.302 - 314. ⟨10.1038/s41467-017-02107-w⟩

Article dans une revue hal-01758726v1

Correction for Colman et al., Genome-Wide Analysis of Host mRNA Translation during Hepatitis C Virus Infection

Hélène Colman , Catherine Le Berre-Scoul , Céline Hernandez , Sandra Pierredon , Audrey Bihouée et al.

Journal of Virology, 2016, 90 (12), pp.5846 - 5846. ⟨10.1128/JVI.00507-16⟩

Article dans une revue hal-01666661v1

Consecutive Food and Respiratory Allergies Amplify Systemic and Gut but Not Lung Outcomes in Mice

Gregory Bouchaud , Paxcal Gourbeyre , Audrey Bihouée , Phillippe Aubert , David Lair et al.

Journal of Agricultural and Food Chemistry, 2015, Equipe 6, 63 (28), pp.6475--6483. ⟨10.1021/acs.jafc.5b02338⟩

Article dans une revue hal-01830976v1
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Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.

Daniel Baron , Emeric Dubois , Audrey Bihouée , Raluca Teusan , Marja Steenman et al.

BMC Genomics, 2011, 12 (1), pp.113. ⟨10.1186/1471-2164-12-113⟩

Article dans une revue inserm-00663672v1

MADGene: Retrieval and processing of gene identifier lists for the analysis of heterogenous microarray datasets

Daniel Baron , Audrey Bihouee , Raluca Teusan , Emeric Dubois , Frederique Savagne et al.

Bioinformatics, 2011, 27, pp.725-726

Article dans une revue hal-00568008v1
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MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets

Daniel Baron , Audrey Bihouée , Raluca Teusan , Emeric Dubois , Frédérique Savagner et al.

Bioinformatics, 2011, 27 (5), pp.725 - 726. ⟨10.1093/bioinformatics/btq710⟩

Article dans une revue hal-03403266v1

Molecular risk stratification in advanced heart failure patients.

Guillaume Lamirault , Nolwenn Le Meur , Jean-Christian Roussel , Daniel Baron , Audrey Bihouee et al.

Journal of Cellular and Molecular Medicine, 2010, 14 (6B), pp.1443-1452. ⟨10.1111/j.1582-4934.2009.00913.x⟩

Article dans une revue hal-00448912v1
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Nutritional Programming in the Rat Is Linked to Long-Lasting Changes in Nutrient Sensing and Energy Homeostasis in the Hypothalamus

David Ricardo Orozco-Solis , Rhowena Jane Barbosa Matos , Omar Guzman Quevedo , Sandra Lopes de Souza , Audrey Bihouee et al.

PLoS ONE, 2010, 5 (10), ⟨10.1371/journal.pone.0013537⟩

Article dans une revue hal-02661782v1

M@IA: a modular open-source application for microarray workflow and integrative datamining.

Antony Le Béchec , Pierre J. Zindy , Thomas Sierocinski , Dimitri Petritis , Audrey Bihouée et al.

In Silico Biology, 2008, 8 (1), pp.63-9

Article dans une revue hal-00677688v1
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A multi-modal and temporal antibiotic resistance knowledge graph

Brieuc Quemeneur , Audrey Bihouée , Samuel Chaffron , Claudine Médigue , Hervé Ménager et al.

SWAT4HCLS 2025 - 16th International SWAT4HCLS conference : Semantic Web Applications and Tools for Health Care and Life Sciences, Scientifika, Feb 2025, Barcelone, Spain

Communication dans un congrès hal-04976716v1

Developing and sharing reproducible bioinformatics pipelines: best practices

Yohann Lelièvre , Audrey Bihouée , Eric Charpentier , Alban Gaignard , Simon Souchet et al.

JOBIM 2017, Jul 2017, Lille, France

Communication dans un congrès hal-01768429v1
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From scientific workflow patterns to 5-star linked open data

Alban Gaignard , Hala Skaf-Molli , Audrey Bihouée

TaPP 2016: 8th USENIX Workshop on the Theory and Practice of Provenance, Jun 2016, Washington D.C., United States

Communication dans un congrès hal-01768449v1

Analyse du transcriptome de jeunes germinations de Medicago truncatula sous stress hydrique

Élisabeth Planchet , Catherine Chevalier , Audrey Bihouée , Edouard Hirchaud , Laure Viau et al.

Rencontres Biotech, Gen2Bio, Biogenouest, Mar 2010, Saint Malo, France

Communication dans un congrès hal-03217486v1

MADTools: management tool for the mining of microarray data

Raluca Teusan , Audrey Bihouee , Nolwenn Le Meur , Gérard Ramstein , Jean Leger

European Conference on Computational Biology, 2003, Paris, France. pp.391--392

Communication dans un congrès hal-00446392v1