Aurélie Pirayre
Publications
Publications
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Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30BMC Genomics, 2020, 21, pp.885. ⟨10.1186/s12864-020-07281-8⟩ |
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BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference RefinementIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (3), pp.850-860. ⟨10.1101/114769⟩ |
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BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network InferenceBMC Bioinformatics, 2015, ⟨10.1186/s12859-015-0754-2⟩ |
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strainBiotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩ |
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Network-Wide Traffic Volume Estimation from Speed Profiles using a Spatio-Temporal Graph Neural Network with Directed Spatial Attention28th International Conference on Intelligent Transportation Systems, Institute of Electrical and Electronics Engineers Intelligent Transportation Systems Society, Nov 2025, Gold Coast, Australia. pp.826 |
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Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family EmbeddingsEUSIPCO - 29th European Signal Processing Conference, Aug 2021, Dublin / Online, Ireland |
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HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation2017 IEEE International Conference on Image Processing (ICIP), Sep 2017, Beijing, China. ⟨10.1109/ICIP.2017.8296988⟩ |
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Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieusesGRETSI : Colloque francophone de traitement du signal et des images, Sep 2015, Lyon, France |
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Robustifying a PLS property prediction workflow on NMR spectra with optimized processingFaraday discussions: Challenges in analysis of complex natural mixtures Faraday Discussion, May 2019, Edinburgh, France |
The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening16th European Congress on Biotechnology, Jul 2014, Edinburgh, United Kingdom. 31 (S), pp.S216, 2014, ⟨10.1016/j.nbt.2014.05.1006⟩ |
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Clustering Dynamics for Improved Speed Prediction Deriving from Topographical GPS Registrations2024 |
Joint restoration/segmentation of multicomponent images with variationalBayes and higher-order graphical models (HOGMep)2017 |
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A review on graph optimization and algorithmic frameworks[Research Report] LIGM - Laboratoire d'Informatique Gaspard-Monge. 2018 |
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Reconstruction and Clustering with Graph optimization and Priors on Gene networks and ImagesMethods and statistics. Université Paris Est - Marne-la-Vallée, 2017. English. ⟨NNT : ⟩ |
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Reconstruction and clustering with graph optimization and priors on gene networks and imagesSignal and Image Processing. Université Paris-Est, 2017. English. ⟨NNT : 2017PESC1170⟩ |