Béatrice Clouet d'Orval

29
Documents

Publications

Publications

RNA Processing and Decay Pathways in Archaea: Emerging Insights on the Function and Evolution of the Archaeal Specific Ski2-Like RNA Helicases

Charles Cirio , Maël Ansart , Emmanuelle Schmitt , Marie Bouvier , Béatrice Clouet-D’orval
Akio Kanai; Allen W. Nicholson. Molecular Evolution of RNA Regulatory Enzymes and Their Systems, 38, Springer Nature Switzerland, pp.123-157, 2025, Nucleic Acids and Molecular Biology, ⟨10.1007/978-3-032-03300-0_6⟩
Chapitre d'ouvrage hal-05329843 v1

Archaeal SF1 and SF2 Helicases

Mirna Hajj , Samar El-Hamaoui , Manon Batista , Marie Bouvier , Ziad Abdel-Razzak et al.
Renu Tuteja (Parasite Biology Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India). Helicases from All Domains of Life, Elsevier, pp.1-18, 2019, 978-0-12-814686-6. ⟨10.1016/B978-0-12-814685-9.00001-4⟩
Chapitre d'ouvrage hal-02381779 v1

An Overview of Ribonuclease Repertoire and RNA Processing Pathways in Archaea

Duy Khanh Phung , Marie Bouvier , Béatrice Clouet-D’orval
RNA Metabolism and Gene Expression in Archaea, pp.89-114, 2017, ⟨10.1007/978-3-319-65795-0_4⟩
Chapitre d'ouvrage hal-02381736 v1

Tips and Tricks to Probe the RNA-Degrading Activities of Hyperthermophilic Archaeal β-CASP Ribonucleases

Duy Khanh Phung , Béatrice Clouet-D’orval
RNA Remodeling Proteins: Methods and Protocols, Methods in Molecular Biology vol. 1259, pp.453-466, 2015, ⟨10.1007/978-1-4939-2214-7_26⟩
Chapitre d'ouvrage hal-02390076 v1
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Evolutionary and functional insights into the Ski2-like helicase family in Archaea: a comparison of Thermococcales ASH-Ski2 and Hel308 activities

Manon Batista , Petra Langendijk-Genevaux , Marta Kwapisz , Isabelle Canal , Duy khanh Phung et al.
NAR Genomics and Bioinformatics, 2024, 6 (1), lqae026 (16p.). ⟨10.1093/nargab/lqae026⟩
Article dans une revue hal-04573206 v1

G-quadruplexes in Haloferax volcanii

Zackie Aktary , Anne Cucchiarini , Guglielmo Vesco , Dorian Noury , Thomas Jourdain et al.
Article dans une revue hal-04823252 v1
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Characterization of a small tRNA ‐binding protein that interacts with the archaeal proteasome complex

Gaëlle Hogrel , Laura Marino-Puertas , Sébastien Laurent , Ziad Ibrahim , Jacques Covès et al.
Molecular Microbiology, 2022, Bacterial macromolecular machineries, 118 (1-2), pp.16-29. ⟨10.1111/mmi.14948⟩
Article dans une revue hal-03701716 v1
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Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase

Mirna Hajj , Petra Langendijk-Genevaux , Manon Batista , Yves Quentin , Sébastien Laurent et al.
Biomolecules, 2021, 11 (7), pp.950. ⟨10.3390/biom11070950⟩
Article dans une revue hal-03365138 v1
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RNA processing machineries in Archaea: the 5′-3′ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3′-5′ exoribonucleolytic RNA exosome machinery

Duy Khanh Phung , Clarisse Etienne , Manon Batista , Petra Langendijk-Genevaux , Yann Moalic et al.
Nucleic Acids Research, 2020, 48 (7), pp.3832-3847. ⟨10.1093/nar/gkaa052⟩
Article dans une revue hal-03028340 v1
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Physical and functional interplay between PCNA DNA clamp and Mre11–Rad50 complex from the archaeon Pyrococcus furiosus

Gaëlle Hogrel , Yang Lu , Sébastien Laurent , Etienne Henry , Clarisse Etienne et al.
Nucleic Acids Research, 2018, 46 (11), pp.5651-5663. ⟨10.1093/nar/gky322⟩
Article dans une revue hal-02390072 v1

Insights into RNA-processing pathways and associated RNA-degrading enzymes in Archaea

Béatrice Clouet-d'Orval , Manon Batista , Marie Bouvier , Yves Quentin , Gwennaele Fichant et al.
FEMS Microbiology Reviews, 2018, 42 (5), pp.579-613. ⟨10.1093/femsre/fuy016⟩
Article dans une revue hal-02381700 v1

Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor.

D.K. Phung , Dana Rinaldi , P.S. Langendijk-Genevaux , Y. Quentin , Agamemnon J. Carpousis et al.
Nucleic Acids Research, 2013, 41, pp.1091-1103
Article dans une revue hal-00947648 v1

Diversity of CRISPR systems in the euryarchaeal Pyrococcales

Cédric Norais , Annick Moisan , Christine Gaspin , Béatrice Clouet-d'Orval
RNA Biology, 2013, 10 (5), pp.659 - 670. ⟨10.4161/rna.23927⟩
Article dans une revue hal-02644106 v1

Emergence of the β-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation

Z. Dominski , Agamemnon J. Carpousis , B. Clouet d'Orval
BBA - Biochimica et Biophysica Acta, 2013, 1829, pp.532-551
Article dans une revue hal-00945030 v1

Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases.

M. Tomkuviene , B. Clouet d'Orval , I. Cerniauskas , E. Weinhold , S. Klimasauskas
Nucleic Acids Research, 2012, 40 (14), pp.6765-6773. ⟨10.1093/nar/gks381⟩
Article dans une revue hal-00789664 v1

Archaeal -CASP Ribonucleases of the aCPSF1 Family are Orthologs of the Eukaryal CPSF-73 factor

D.K. Phung , Dana Rinaldi , P.S. Langendijk-Genevaux , Y. Quentin , Agamemnon J. Carpousis et al.
Nucleic Acids Research, 2012, 41 (2), pp.1091-103
Article dans une revue hal-00788546 v1

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

Kounthéa Phok , Annick Moisan , Dana Rinaldi , Nicolas Brucato , Agamemnon J Carpousis et al.
BMC Genomics, 2011, 12, pp.312. ⟨10.1186/1471-2164-12-312⟩
Article dans une revue hal-02648237 v1

Euryarchaeal beta-CASP proteins with homology to bacterial RNase J Have 5'- to 3'-exoribonuclease activity.

B. Clouet d'Orval , Dana Rinaldi , Y. Quentin , Agamemnon J. Carpousis
Journal of Biological Chemistry, 2010, 285, pp.17574-17583. ⟨10.1074/jbc.M109.095117⟩
Article dans une revue hal-00506940 v1

Two different mechanisms for tRNA ribose methylation in archaea: a short survey

Béatrice Clouet-d'Orval , Christine Gaspin , Annie Mougin
Biochimie, 2005, 87 (9-10), pp.889-895. ⟨10.1016/j.biochi.2005.02.004⟩
Article dans une revue istex hal-02678251 v1

The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn

S. Nolivos , Agamemnon J. Carpousis , B. Clouet d'Orval
Nucleic Acids Research, 2005, 33, pp.6507-6514
Article dans une revue hal-00017165 v1
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Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp

Béatrice Clouet d'Orval , Marie-Line Bortolin , Christine Gaspin , Jean-Pierre Bachellerie
Nucleic Acids Research, 2001, 29 (22), pp.4518-4529. ⟨10.1093/nar/29.22.4518⟩
Article dans une revue hal-02675706 v1

Tissue-specific splicing of two mutually exclusive exons of the chicken β-tropomyosin pre-mRNA: Positive and negative regulations

M. E. Gallego , P. Sirand-Pugnet , P. Durosay , B. Clouet d'Orval , Y. d'Aubenton-Carafa et al.
Biochimie, 1996, 78 (6), pp.457 - 465. ⟨10.1016/0300-9084(96)84752-3⟩
Article dans une revue istex inserm-01907496 v1

β-Tropomyosin Pre-mRNA Folding Around a Muscle-specific Exon Interferes with Several Steps of Spliceosome Assembly

Pascal Sirand-Pugnet , Patrice Durosay , Béatrice Clouet-d'Orval , Edward Brody , Joëlle Marie
Journal of Molecular Biology, 1995, 251 (5), pp.591-602. ⟨10.1006/jmbi.1995.0458⟩
Article dans une revue istex hal-04256962 v1

RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts.

Béatrice Clouet d'Orval , Yves d'Aubenton Carafa , Pascal Sirand-Pugnet , Maria E. Gallego , Edward Brody et al.
Science, 1991, 252 (5014), pp.1823-1828. ⟨10.1126/science.2063195⟩
Article dans une revue inserm-01907516 v1