|
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments
Fayrouz Hammal
,
Pierre De langen
,
Aurélie Bergon
,
Fabrice Lopez
,
Benoit Ballester
et al.
Journal articles
hal-03433360v1
|
|
JASPAR 2020: update of the open-access database of transcription factor binding profiles.
Oriol Fornés
,
Jaime Castro-Mondragon
,
Aziz Khan
,
Robin van Der Lee
,
Xi Zhang
et al.
Journal articles
hal-02365013v1
|
|
Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study
Giovanna Ambrosini
,
Ilya Vorontsov
,
Dmitry Penzar
,
Romain Groux
,
Oriol Fornés
et al.
Journal articles
hal-02773294v1
|
|
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments
Jeanne Chèneby
,
Zacharie Ménétrier
,
Martin Mestdagh
,
Thomas Rosnet
,
Allyssa Douida
et al.
Journal articles
hal-02351736v1
|
|
A predictable conserved DNA base composition signature defines human core DNA replication origins
Ildem Akerman
,
Bahar Kasaai
,
Alina Bazarova
,
Pau Biak Sang
,
Isabelle Peiffer
et al.
Journal articles
hal-02945610v1
|
|
Involvement of G-quadruplex regions in mammalian replication origin activity
Paulina Prorok
,
Marie Artufel
,
Antoine Aze
,
Philippe Coulombe
,
Isabelle Peiffer
et al.
Journal articles
hal-03101805v1
|
|
A map of direct TF–DNA interactions in the human genome
Marius Gheorghe
,
Geir Kjetil Sandve
,
Aziz Khan
,
Jeanne Chèneby
,
Benoit Ballester
et al.
Journal articles
hal-02531478v1
|
|
A map of direct TF–DNA interactions in the human genome
Marius Gheorghe
,
Geir Kjetil Sandve
,
Aziz Khan
,
Jeanne Chèneby
,
Benoit Ballester
et al.
Journal articles
hal-01980383v1
|
|
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
Jeanne Chèneby
,
Marius Gheorghe
,
Marie Artufel
,
Anthony Mathelier
,
Benoit Ballester
et al.
Journal articles
hal-01646201v1
|
|
Erratum. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Robin Van der lee
,
Benoit Ballester
,
François Parcy
,
Aziz Khan
,
Oriol Fornés
et al.
Journal articles
hal-01980416v1
|
|
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Aziz Khan
,
Oriol Fornés
,
Arnaud Stigliani
,
Marius Gheorghe
,
Jaime A. Castro-Mondragon
et al.
Journal articles
hal-01646126v1
|
|
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
Aurélien Griffon
,
Quentin Barbier
,
Jordi Dalino
,
Jacques van Helden
,
Salvatore Spicuglia
et al.
Journal articles
hal-01219379v1
|
|
The chromatin environment shapes DNA replication origin organization and defines origin classes
Christelle Cayrou
,
Benoit Ballester
,
Isabelle Peiffer
,
Romain Fenouil
,
Philippe Coulombe
et al.
Journal articles
hal-03101863v1
|
|
High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq
Laurent Vanhille
,
Aurélien Griffon
,
Muhammad Ahmad Maqbool
,
Joaquin Zacarias-Cabeza
,
Lan T.M. Dao
et al.
Journal articles
hal-01614948v1
|
|
TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation
Daniil Alpern
,
Diana Langer
,
Benoit Ballester
,
Stephanie Le Gras
,
Christophe Romier
et al.
Journal articles
hal-01404987v1
|
|
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
Benoit Ballester
,
Alejandra Medina-Rivera
,
Dominic Schmidt
,
Mar Gonzàlez-Porta
,
Matthew Carlucci
et al.
Journal articles
hal-01455448v1
|
|
A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.
Alister P W Funnell
,
Michael D Wilson
,
Benoit Ballester
,
Ka Sin Mak
,
Jon Burdach
et al.
American Journal of Human Genetics, 2013, 92 (3), pp.460--467
Journal articles
hal-01615153v1
|
|
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
Dominic Schmidt
,
Petra C Schwalie
,
Michael D Wilson
,
Benoit Ballester
,
Angela Goncalves
et al.
Cell, 2012, 148 (1-2), pp.335--348
Journal articles
hal-01615154v1
|
|
Identification of proteomic signatures of mantle cell lymphoma, small lymphocytic lymphoma, and marginal zone lymphoma biopsies by surface enhanced laser desorption/ionization-time of flight mass spectrometry.
Delphine Rolland
,
Ali Bouamrani
,
Rémi Houlgatte
,
Aurélie Barbarat
,
Claire Ramus
et al.
Leukemia & lymphoma, 2011, 52 (4), pp.648--658
Journal articles
hal-01615155v1
|
|
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
Dominic Schmidt
,
Michael D Wilson
,
Benoit Ballester
,
Petra C Schwalie
,
Gordon D Brown
et al.
Science (New York, NY), 2010, 328 (5981), pp.1036--1040
Journal articles
hal-01615156v1
|
|
Consistent annotation of gene expression arrays
Benoit Ballester
,
Nathan Johnson
,
Glenn Proctor
,
Paul Flicek
BMC Genomics, 2010, 11, pp.294
Journal articles
hal-01615157v1
|
|
Ensembl's 10th year.
Nathan Johnson
,
Andreas Kähäri
,
Damian Keefe
,
Stephen Keenan
,
Rhoda Kinsella
et al.
Nucleic Acids Research, 2010, 38 (Database issue), pp.D557--62
Journal articles
hal-01615158v1
|
|
BioMart Central Portal―unified access to biological data.
Syed Haider
,
Benoit Ballester
,
Damian Smedley
,
Junjun Zhang
,
Peter Rice
et al.
Nucleic Acids Research, 2009, 37 (Web Server issue), pp.W23--7
Journal articles
hal-01615159v1
|
|
Ensembl 2009.
T J P Hubbard
,
B L Aken
,
S Ayling
,
Benoit Ballester
,
K Beal
et al.
Nucleic Acids Research, 2009, 37 (Database issue), pp.D690--7
Journal articles
hal-01615160v1
|
|
Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues.
Mark Carlile
,
Daniel Swan
,
Kelly Jackson
,
Keziah Preston-Fayers
,
Benoit Ballester
et al.
Nucleic Acids Research, 2009, 37 (7), pp.2274--2282
Journal articles
hal-01615161v1
|
|
BioMart―biological queries made easy
Damian Smedley
,
Syed Haider
,
Benoit Ballester
,
Richard Holland
,
Darin London
et al.
Journal articles
hal-01615162v1
|
|
Ensembl 2008
P. Flicek
,
B. Aken
,
K. Beal
,
Benoit Ballester
,
M. Caccamo
et al.
Journal articles
hal-01626053v1
|
|
Ensembl 2007.
T J P Hubbard
,
B L Aken
,
K Beal
,
Benoit Ballester
,
M Caccamo
et al.
Nucleic Acids Research, 2006, 35 (Database issue), pp.D610--7
Journal articles
hal-01615163v1
|
|
Gene expression profiling identifies molecular subgroups among nodal peripheral T-cell lymphomas
B Ballester
,
O Ramuz
,
C Gisselbrecht
,
G Doucet
,
L Loi
et al.
Journal articles
hal-01612147v1
|
|
Gene profiling reveals specific oncogenic mechanisms and signaling pathways in oncocytic and papillary thyroid carcinoma
O Baris
,
D Mirebeau-Prunier
,
F Savagner
,
P Rodien
,
B Ballester
et al.
Journal articles
hal-01612148v1
|
|
The Sgp3 locus on mouse chromosome 13 regulates nephritogenic gp70 autoantigen expression and predisposes to autoimmunity
Catherine Laporte
,
Benoit Ballester
,
Charles Mary
,
Shozo Izui
,
Luc Reininger
et al.
Journal of Immunology, 2003, 171 (7), pp.3872--3877
Journal articles
hal-01615164v1
|