Bertrand DUBREUCQ

65
Documents

Présentation

Equipe SeeDev, UMR 1318 Institut Jean Pierre Bourgin, INRA, centre de Versailles

From my past and present research achievements, I have acquired a good expertise in plant molecular genetics. My technical skills are based on the tools of molecular biology, cytology and bioinformatics and serve to answer biological questions involving seed development. My main topic is the transcriptional network controlling the switch between embryogenesis and accumulation of reserves. I am focusing on LEC2, a master regulator of seed maturation belonging to the B3 family. My work aims to determine (i) how this factor binds, or interact, with its DNA targets, in a possible complex with ABI3 and FUS3, (ii) how is this protein complex is regulated, and (iii) how LEC2 is transcriptionnaly and post-transcriptionally tuned. We aim at modelling the regulatory network involved in Arabidopsis and investigate how it is conserved in cereals.

Scientific manager of the cytology and imaging platform of the Plant Observatory, I ensure the proper scientific and human functioning of a strategic tool for my institute (1200M2, 5 Full Time Equivalents, 100 regular users, 5 confocal micoscopes, laser microdissector, twenty large optic pieces, and various cytology-related materials http://www.versailles-grignon.inra.fr/pciv).
Operating correspondent for the institute, I manage all aspects of the unit's 9 buildings (8000M2), requests for equipment, works, modifications, in relations with the research center for all these aspects. I am also managing the unit’s workshop (3 FTEs).

Publications

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Publications

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The characterization of the LEAFY COTYLEDON 2 activation domains reveals its conserved dual mode of action in flowering plants

Camille Salaün , Johanne Thévenin , Angèle Edoura-Gaena , Yichun Qiu , Jasmine Burguet et al.

The Plant Journal, 2025, 123 (4), ⟨10.1111/tpj.70380⟩

Article dans une revue hal-05217878v1

Tracing 100 million years of grass genome evolutionary plasticity

Arnaud Bellec , Mamadou Dia Sow , Caroline Pont , Peter Civan , Emile Mardoc et al.

The Plant Journal, 2023, 114 (6), pp.1243-1266. ⟨10.1111/tpj.16185⟩

Article dans une revue hal-04305473v1
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Recent progress in molecular genetics and omics-driven research in seed biology

Sébastien Baud , Massimiliano Corso , Isabelle Debeaujon , Bertrand Dubreucq , Dominique Job et al.

Comptes Rendus. Biologies, 2023, 345, pp.61 - 110. ⟨10.5802/crbiol.104⟩

Article dans une revue hal-05263353v1
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Custom methods to identify conserved genetic modules applied to novel transcriptomic data from Amborella trichopoda

Ana Rivarola Sena , Amélie Andres-Robin , Aurélie Vialette , Jérémy Just , Alexandra Launay-Avon et al.

Journal of Experimental Botany, 2022, 73 (8), pp.2487-2498. ⟨10.1093/jxb/erac044⟩

Article dans une revue hal-03566722v1
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The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis

Pierre Jacob , Gwilherm Brisou , Marion Dalmais , Johanne Thévenin , Froukje van Der Wal et al.

Genes, 2021, 12 (5), pp.1-18. ⟨10.3390/genes12050746⟩

Article dans une revue hal-03335244v1
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Genetic and Molecular Control of Somatic Embryogenesis

Camille Salaün , Loïc Lepiniec , Bertrand Dubreucq

Plants, 2021, 10 (7), pp.1467. ⟨10.3390/plants10071467⟩

Article dans une revue hal-03754308v1

Variation in expression of the HECT E3 ligase UPL3 modulates LEC2 levels, seed size, and crop yields in brassica napus

Charlotte Miller , Rachel Wells , Neil Mckenzie , Martin Trick , Joshua Ball et al.

The Plant cell, 2019, 31 (10), pp.2370-2385. ⟨10.1105/tpc.18.00577⟩

Article dans une revue hal-02622699v1

Regulation of FUSCA3 Expression During Seed Development in Arabidopsis

Thomas James Roscoe , Virginie Vaissayre , Gaël Paszkiewicz , Fernando Clavijo , Zsolt Kelemen et al.

Plant and Cell Physiology, 2019, 60 (2), pp.476-487. ⟨10.1093/pcp/pcy224⟩

Article dans une revue hal-02386031v1

LEC1 (NF-YB9) directly interacts with LEC2 to control gene expression in seed

Céline Boulard , Johanne Thévenin , O. Tranquet , V. Laporte , L. Lepiniec et al.

Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2018, 1861 (5), pp.443-450. ⟨10.1016/j.bbagrm.2018.03.005⟩

Article dans une revue hal-01746034v1
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Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo

Kaori Sakai , Ludivine Taconnat , Néro Borrega , Jennifer Yansouni , Véronique Brunaud et al.

Plant Methods, 2018, 14, pp.10. ⟨10.1186/s13007-018-0275-x⟩

Article dans une revue hal-02625394v1
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Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development

L. Lepiniec , M. Devic , T. Roscoe , D. Bouyer , D.-X Zhou et al.

Sexual Plant Reproduction, 2018, 31 (3), pp.291-307. ⟨10.1007/s00497-018-0337-2⟩

Article dans une revue hal-01969458v1

Regulation and evolution of the interaction of the seed B3 transcription factors with NF-Y subunits

Céline Boulard , Abdelhak Fatihi , Loic Lepiniec , Bertrand Dubreucq

Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2017, 1860 (10), pp.1069-1078. ⟨10.1016/j.bbagrm.2017.08.008⟩

Article dans une revue hal-02627256v1

The Physcomitrella patens System for Transient Gene Expression Assays.

Johanne Thévenin , Wenjia Xu , Louise Vaisman , Loic Lepiniec , Bertrand Dubreucq et al.

Methods in Molecular Biology, 2016, 1482, pp.151-61. ⟨10.1007/978-1-4939-6396-6_10⟩

Article dans une revue hal-01389059v1
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La caméline, une plante modèle pour la recherche translationnelle

Mark Tepfer , Bertrand Dubreucq , Jean-Denis Faure

Biofutur, 2016, 380, pp.38-41

Article dans une revue hal-01529235v1

Deciphering the molecular mechanisms underpinning the transcriptional control of gene expression by L-AFL proteins in Arabidopsis seed.

Sebastien S. Baud , Zsolt Kelemen , Johanne Thévenin , Celine Boulard , Sandrine Blanchet et al.

Plant Physiology, 2016, 171 (171), pp.1099-1112. ⟨10.1104/pp.16.00034⟩

Article dans une revue hal-01406124v1
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Imaging and quantitative analysis of size and distribution of sperical bodies, [i]e.g[/i]. embryonic oil bodies

Martine Miquel , Ghassen Trigui , Alain Trubuil , Bertrand Dubreucq

Bio-protocol , 2015, 5 (1), pp.1-6

Article dans une revue (article de synthèse) hal-01204094v1
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Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast

Zsolt Kelemen , Alvaro Sebastian , Wenjia Xu , Damaris Grain , Fabien Salsac et al.

PLoS ONE, 2015, 10 (10), pp.e0141044. ⟨10.1371/journal.pone.0141044⟩

Article dans une revue hal-01837546v1

ZmZHOUPI, an endosperm-specific basic helix-loop-helix transcription factor involved in maize seed development

Aurélie Grimault , Ghislaine Gendrot , Sophy Chamot , Thomas Widiez , Hervé Rabillé et al.

The Plant Journal, 2015, 84 (3), pp.574-586. ⟨10.1111/tpj.13024⟩

Article dans une revue hal-01536562v1

The structural organization of seed oil bodies could explain the contrasted oil extractability observed in two rapeseed genotypes.

Celine Boulard , Michel Bardet , Thierry Chardot , Bertrand Dubreucq , Marina Gromova et al.

Planta, 2015, 242 (1), pp.53-68. ⟨10.1007/s00425-015-2286-4⟩

Article dans une revue hal-01204182v1
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Role of B3 domain transcription factors of the AFL family in maize kernel filling

Aurélie Grimault , Ghislaine Gendrot , Sandrine Chaignon , Françoise Gilard , Guillaume Tcherkez et al.

Plant Science, 2015, 236, pp.116-125. ⟨10.1016/j.plantsci.2015.03.021⟩

Article dans une revue hal-01204180v1
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MYB118 Represses Endosperm Maturation in Seeds of Arabidopsis

Guillaume Barthole , Alexandra To , Chloé Marchive , Véronique Brunaud , Ludivine Soubigou-Taconnat et al.

The Plant cell, 2014, 26 (9), pp.3519 - 3537. ⟨10.1105/tpc.114.130021⟩

Article dans une revue hal-01204153v1

Endosperm breakdown in Arabidopsis requires heterodimers of the basic helix-loop-helix proteins ZHOUPI and INDUCER OF CBP EXPRESSION 1

Gregoire Denay , Audrey Creff , Steven Moussu , Pauline Wagnon , Johanne Thévenin et al.

Development (Cambridge, England), 2014, 141 (6), pp.1222-U85. ⟨10.1242/dev.103531⟩

Article dans une revue hal-01204028v1
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Specialization of Oleosins in Oil Body Dynamics during Seed Development in Arabidopsis Seeds

Martine Miquel , Ghassen Trigui , Sabine D’andrea , Zsolt Kelemen , Sébastien Baud et al.

Plant Physiology, 2014, 164 (4), pp.1866-1878. ⟨10.1104/pp.113.233262⟩

Article dans une revue hal-03659033v1
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Function and localization of the Arabidopsis thaliana diacylglycerol acyltransferase DGAT2 expressed in yeast

Laure Aymé , Sebastien S. Baud , Bertrand Dubreucq , Florent Joffre , Thierry Chardot

PLoS ONE, 2014, 9 (3), 9 p. ⟨10.1371/journal.pone.0092237⟩

Article dans une revue hal-01204016v1
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The dynamics of oil bodies in Arabidopsis thaliana seeds : a mathematical model of biogenesis and coalescence

Ghassen Trigui , Béatrice Laroche , Martine Miquel , Bertrand B. Dubreucq , Alain Trubuil

International Journal of Electrical, Computer, Energetic, Electronic and Communication Engineering, 2012, 64, pp.763-768

Article dans une revue hal-02643123v1

Evolution goes GAGA: GAGA binding proteins across kingdoms

Nathalie Berger , Bertrand B. Dubreucq

Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2012, 1819 (8), pp.863 - 868. ⟨10.1016/j.bbagrm.2012.02.022⟩

Article dans une revue istex hal-01004142v1

A new system for fast and quantitative analysis of heterologous gene expression in plants

Johanne Thévenin , Christian Dubos , Wenjia Xu , José Gentilhomme-Le Gourrierec , Zolt Kelemen et al.

New Phytologist, 2012, 193 (2), pp.504 - 512. ⟨10.1111/j.1469-8137.2011.03936.x⟩

Article dans une revue hal-01004263v1

A comprehensive overview of grain development in Brachypodium distachyon variety Bd21

Fabienne Guillon , Colette Larre , Fabrice Petitpas , Adeline Berger , Jihad Moussawi et al.

Journal of Experimental Botany, 2012, 63 (2), pp.739-755. ⟨10.1093/jxb/err298⟩

Article dans une revue hal-01190419v1
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Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures

Francisco Cubillos , Jennifer Yansouni , Ahmid Khalili , Sandrine Balzergue , Samira Elftieh et al.

BMC Genomics, 2012, 13, pp.1-12. ⟨10.1186/1471-2164-13-117⟩

Article dans une revue hal-01189696v1
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Transcriptional regulation of Arabidopsis LEAFY COTYLEDON2 involves RLE,a cis-element that regulates Trimethylation of Histone H3 at Lysine-27

Nathalie Berger , Bertrand B. Dubreucq , François Roudier , Christian C. Dubos , Loic L. Lepiniec

The Plant cell, 2011, 23 (11), pp.4065-4078. ⟨10.1105/tpc.111.087866⟩

Article dans une revue hal-01000017v1
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Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research

Helen North , Sebastien S. Baud , Isabelle Debeaujon , Christian Dubos , Bertrand Dubreucq et al.

The Plant Journal, 2010, 61 (6), pp.971-981. ⟨10.1111/j.1365-313X.2009.04095.x⟩

Article dans une revue hal-01203892v1
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NOF1 encodes an arabidopsis protein involved in the control of rRNA expression

Erwana Harscoet , Bertrand Dubreucq , Jean-Christophe Palauqui , Loic Lepiniec

PLoS ONE, 2010, 5 (9), pp.e12829. ⟨10.1371/journal.pone.0012829⟩

Article dans une revue hal-01203890v1

Arabidopsis seed secrets unravelled after a decade of genetic and omics‐driven research

Helen North , Sébastien Baud , Isabelle Debeaujon , Christian Dubos , Bertrand Dubreucq et al.

The Plant Journal, 2010, 61 (6), pp.971 - 981. ⟨10.1111/j.1365-313x.2009.04095.x⟩

Article dans une revue hal-05263460v1

High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis.

Elisabeth Truernit , Hélène Bauby , Bertrand Dubreucq , Olivier Grandjean , John Runions et al.

The Plant cell, 2008, 20 (6), pp.1494-1503. ⟨10.1105/tpc.107.056069⟩

Article dans une revue hal-02663189v1

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis.

Monica Santos-Mendoza , Bertrand Dubreucq , Sebastien S. Baud , François Parcy , Michel Caboche et al.

The Plant Journal, 2008, 54 (4), pp.608-20. ⟨10.1111/j.1365-313X.2008.03461.x⟩

Article dans une revue hal-00297574v1

WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis

Sebastien S. Baud , Monica Santos Mendoza , Alexandra A. To , Erwana E. Harscoet , Loic L. Lepiniec et al.

The Plant Journal, 2007, 50 (5), pp.825-838. ⟨10.1111/j.1365-313X.2007.03092.x⟩

Article dans une revue hal-02664890v1

Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana

Sebastien S. Baud , Sylvie Wuilleme , Bertrand B. Dubreucq , Aurélie de Almeida , Cindy Vuagnat et al.

The Plant Journal, 2007, 52 (3), pp.405-419. ⟨10.1111/j.1365-313X.2007.03232.x⟩

Article dans une revue hal-02661879v1

LEAFY COTYLEDON 2 activation is sufficient to trigger the accumulation of oil and seed specific mRNAs in Arabidopsis leaves

Monica Santos-Mendoza , Bertrand B. Dubreucq , Martine Miquel , Michel M. Caboche , Loic L. Lepiniec

FEBS Letters, 2005, 579 (21), pp.4666-4670. ⟨10.1016/j.febslet.2005.07.037⟩

Article dans une revue hal-02682706v1

TT2, TT8 and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis

A. Baudry , M.A. Heim , Bertrand B. Dubreucq , B. Weisshaar , Loic L. Lepiniec

The Plant Journal, 2004, 39 (3), pp.366-380. ⟨10.1111/j.1365-313X.2004.02138.x⟩

Article dans une revue hal-02683484v1

The AtRbx1 Protein Is Part of Plant SCF Complexes, and Its Down-regulation Causes Severe Growth and Developmental Defects

Esther Lechner , Daoxin Xie , Sandrine Grava , Emmanuelle Pigaglio , Severine Planchais et al.

Journal of Biological Chemistry, 2002, 277 (51), pp.50069-50080. ⟨10.1074/jbc.M204254200⟩

Article dans une revue hal-05491771v1
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FLAGdb/FST: a database of mapped flanking insersion sites (FSTs) of Arabidopsis thaliana T-DNA transformants

Franck Samson , Véronique Brunaud , Sandrine Balzergue , Bertrand B. Dubreucq , Loic L. Lepiniec et al.

Nucleic Acids Research, 2002, 30 (1), pp.94-97

Article dans une revue hal-02678939v1
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The AtRbx1 protein is part of plant SCF complexes, and its down-regulation causes severe growth and developmental defects

Esther Lechner , Daoxin Xie , Sandrine Grava , Emmanuelle Pigaglio , Séverine Planchais et al.

Journal of Biological Chemistry, 2002, 277 (51), pp.50069-50080. ⟨10.1074/jbc.M204254200⟩

Article dans une revue hal-02682424v1

T-DNA integration into Arabidopsis genome depends on sequences of pre-insertion sites

Véronique Brunaud , Sandrine Balzergue , Bertrand B. Dubreucq , Sebastien Aubourg , Franck Samson et al.

EMBO Reports, 2002, 3 (12), pp.1152-1157. ⟨10.1093/embo-reports/kvf237⟩

Article dans une revue hal-02682810v1

Improved PCR-walking for large-scale isolation of plant T-DNA borders

Sandrine Balzergue , Bertrand B. Dubreucq , Sylvie Chauvin , I. Le-Clainche , F. Le Boulaire et al.

Biotechniques, 2001, 30 (3), 3 p

Article dans une revue hal-02670631v1

Approches moléculaires de la qualité et du développement des graines

Bertrand B. Dubreucq , Philippe Grappin , Martine Miquel , Helen North , Christine Rochat et al.

Oléagineux, Corps Gras, Lipides, 2001, 8 (5), pp.487-495

Article dans une revue hal-02674355v1

Arabidopsis glucosidase I mutants reveal a critical role of N-glycan trimming in seed development

M. Boisson , Veronique Gomord , Corinne Audran , Nathalie Berger , Bertrand B. Dubreucq et al.

EMBO Journal, 2001, 20 (5), pp.1010-1019

Article dans une revue hal-02683628v1

The Arabidopsis AtPRP1 extensin-like gene is specifically expressed in endosperm during seed germination

Bertrand B. Dubreucq , Nathalie Berger , E. Vincent , M. Boisson , G. Pelletier et al.

The Plant Journal, 2000, 5, pp.643-652

Article dans une revue hal-02688788v1

La germination vient en dormant

Michel M. Caboche , Bertrand B. Dubreucq , Philippe Grappin , P. Lepiniec , Nathalie Nesi

Biofutur, 1998, 175, pp.32-35

Article dans une revue hal-02689896v1

A new method for the identification and isolation of genes essential for Arabidopsis thaliana seed germination

Bertrand B. Dubreucq , Philippe Grappin , Michel M. Caboche

Molecular and General Genetics MGG, 1996, 252, pp.42-50

Article dans une revue hal-02692047v1

Elucidating the role of nf-yb transcription factors in pea seed development

Yara Noureddine , Christine Le Signor , Johanne Thévenin , Myriam Sanchez , Titouan Bonnot et al.

ILS4 Fourth International Legume Society Conference 2023, Sep 2023, Grenade, Spain

Communication dans un congrès hal-04223020v1

Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiques

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Louise Deleger et al.

Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1

Communication dans un congrès hal-01455855v1
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016

Estelle Chaix , Bertrand Dubreucq , Abdelhak Fatihi , Dialekti Valsamou , Robert Bossy et al.

BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113

Communication dans un congrès hal-01455854v1

Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development

Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Estelle Chaix , Robert Bossy et al.

26th International Conference on Arabidopsis Research, Jul 2015, Paris, France

Communication dans un congrès hal-01524850v1
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Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Robert Bossy et al.

BioCreative 5, Sep 2015, Madrid, Spain

Communication dans un congrès hal-01512197v1

Information extraction challenge Gene Regulation Network in Arabidopsis thaliana (GRNA)

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Robert Bossy et al.

Paris-Saclay Center for Data Science: Open Software Initiative (OSI), Oct 2015, Orsay, France. pp.14 slides, ⟨10.13140/RG.2.1.4286.6326⟩

Communication dans un congrès hal-01603453v1
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Analysis of factors affecting the growth of oil bodies in A. Thaliana seeds: use of ordinary least squares and quantile regression

Ghassen Trigui , Martine Miquel , Bertrand B. Dubreucq , Olivier David , Alain Trubuil

The 10th International Workshop on Computational Systems Biology, WCSB 2013, Jun 2013, Tampere, Finland. pp.144

Communication dans un congrès hal-02748214v1
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The dynamics of oil bodies in A. thaliana seeds :A mathematical model of biogenesis and coalescence

Ghassen Trigui , Béatrice Laroche , Martine Miquel , Bertrand Dubreucq , Alain Trubuil

ICMB 2012 - VIII International Conference on Mathematical Biology, Labo/service de l'auteur, Ville service., Apr 2012, Paris, France. pp.763-768

Communication dans un congrès hal-01019421v1

Brachypodium distachyon grain: development-associated changes in morphology and storage accumulation

Colette Larre , Anne-Laure Chateigner Boutin , Brigitte Bouchet , Fabrice Petitpas , Hélène Rogniaux et al.

1. European Brachypodium Workshop, Oct 2011, Versailles, France

Communication dans un congrès hal-02809921v1

L'alimentation des vaches est susceptible de modifier les caractéristiques sensorielles du lait

Bertrand B. Dubreucq , B. Martin , Anne Ferlay , Philippe Pradel , Isabelle Verdier-Metz et al.

9. Rencontres Recherches Ruminants, Dec 2002, Paris, France

Communication dans un congrès hal-02761189v1

Isolation and characterization of Arabidopsis mutants affected in seed development or germination

Loic L. Lepiniec , Sandrine Balzergue , Nicole Bechtold , M. Boisson , Bertrand B. Dubreucq et al.

9. International conference on Arabidopsis research, Jun 1998, Madison, United States

Communication dans un congrès hal-02765356v1

Seed Development

Bertrand Dubreucq , Sebastien S. Baud , Isabelle Debeaujon , Christian Dubos , Annie Marion-Poll et al.

Plant Developmental Biology - Biotechnological Perspectives, Springer-verlag, 497 p., 2010, 978-3-642-02300-2. ⟨10.1007/978-3-642-02301-9_17⟩

Chapitre d'ouvrage hal-01203968v1

Seed Development

B. Dubreucq , S. Baud , I. Debeaujon , C. Dubos , A. Marion-Poll et al.

Plant Developmental Biology - Biotechnological Perspectives, Springer Berlin Heidelberg, pp.341-359, 2010, 978-3-642-02300-2. ⟨10.1007/978-3-642-02301-9_17⟩

Chapitre d'ouvrage hal-05263499v1