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Jean-François BRUGERE

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A catalogue of 1,167 genomes from the human gut archaeome

Cynthia Maria Chibani , Alexander Mahnert , Guillaume Borrel , Alexandre Almeida , Almut Werner et al.
Nature Microbiology, 2022, 7 (1), pp.48-61. ⟨10.1038/s41564-021-01020-9⟩
Journal articles hal-03521407v1
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The host-associated archaeome

Guillaume Borrel , Jean-François Brugere , Simonetta Gribaldo , Ruth Schmitz , Christine Moissl-Eichinger et al.
Nature Reviews Microbiology, 2020, ⟨10.1038/s41579-020-0407-y⟩
Journal articles pasteur-02942982v1
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Archaea, specific genetic traits, and development of improved bacterial live biotherapeutic products: another face of next-generation probiotics

Khaled Fadhlaoui , Marie-Edith Arnal , Matthieu Martineau , Paméla Camponova , Bernard Ollivier et al.
Applied Microbiology and Biotechnology, 2020, 104 (11), pp.4705-4716. ⟨10.1007/s00253-020-10599-8⟩
Journal articles hal-02996543v1

Archaea: Microbial Candidates in Next-generation Probiotics Development

Jean-François Brugère , Wajdi Ben Hania , Marie-Edith Arnal , Céline Ribière , Nathalie Ballet et al.
Journal of Clinical Gastroenterology, 2018, 52, pp.S71-S73. ⟨10.1097/MCG.0000000000001043⟩
Journal articles hal-01981676v1
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ASaiM: a Galaxy-based framework to analyze microbiota data

Bérénice Batut , Kevin Gravouil , Clemence Defois , Saskia Hiltemann , Jean-François Brugère et al.
GigaScience, 2018, 7 (6), pp.1-7. ⟨10.1093/gigascience/giy057⟩
Journal articles hal-01990448v1
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Pyrrolysine in archaea: a 22nd amino acid encoded through a genetic code expansion

Jean-François Brugere , John F. Atkins , Paul W. O'Toole , Guillaume Borrel
Emerging Topics in Life Sciences, 2018, 2 (4), pp.607 - 618. ⟨10.1042/etls20180094⟩
Journal articles hal-02996724v1
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Functional amplification and preservation of human gut microbiota

Nadia Gaci , Prem Prashant Chaudhary , William Tottey , Monique Alric , Jean-François Brugère et al.
Microbial Ecology in Health and Disease, 2017, 28 (1), pp.1308070. ⟨10.1080/16512235.2017.1308070⟩
Journal articles hal-01612774v1

Fecal microbiota variation across the lifespan of the healthy laboratory rat

Burkhardt Flemer , Nadia Gaci , Guillaume Borrel , Ian R. Sanderson , Prem P. Chaudhary et al.
Gut microbes, 2017, 8 (5), pp.428 - 439. ⟨10.1080/19490976.2017.1334033⟩
Journal articles hal-01658606v1
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Colonic transit time is a driven force of the gut microbiota composition and metabolism: In vitro evidence

William Tottey , David Feria Gervasio , Nadia Gaci , Brigitte Laillet , Estelle Pujos-Guillot et al.
Journal of Neurogastroenterology and Motility, 2017, 23 (1), pp.124-134. ⟨10.5056/jnm16042⟩
Journal articles hal-01595498v1

Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome

Guillaume Borrel , Angela Mccann , Jennifer Deane , Marta C Neto , Denise B Lynch et al.
ISME Journal, 2017, 11 (9), pp.2059 - 2074. ⟨10.1038/ismej.2017.72⟩
Journal articles hal-01658467v1
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Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

Abdel Belkorchia , Jean-François Pombert , Valérie Polonais , Nicolas Parisot , Frédéric Delbac et al.
DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩
Journal articles hal-01594835v1
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Guillaume Borrel , Nicolas Parisot , Hugh Harris , Eric Peyretaillade , Nadia Gaci et al.
BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩
Journal articles pasteur-01059404v1
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Archaebiotics Proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease

Paul W O’toole , Jean-François Brugère , Guillaume Borrel , Nadia Gaci , William Tottey et al.
Gut microbes, 2014, 5 (1), pp.5 - 10. ⟨10.4161/gmic.26749⟩
Journal articles hal-01612755v1
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PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification

Faouzi Jaziri , Nicolas Parisot , Anis Abid , Jérémie Denonfoux , C. Ribière et al.
Database - The journal of Biological Databases and Curation, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩
Journal articles hal-01612766v1

Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota

David Feria Gervasio , William Tottey , Nadia Gaci , Monique Alric , Jean-Michel Cardot et al.
Journal of Microbiological Methods, 2014, 96, pp.111-118. ⟨10.1016/j.mimet.2013.11.015⟩
Journal articles hal-01189891v1
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Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette

Guillaume Borrel , Nadia Gaci , Pierre Peyret , Paul W. O'Toole , Simonetta Gribaldo et al.
Archaea, 2014, 2014, pp.1 - 11. ⟨10.1155/2014/374146⟩
Journal articles hal-01612761v1
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Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces

Guillaume Borrel , Hugh Harris , Nicolas Parisot , Nadia Gaci , William Tottey et al.
Genome Announcements, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩
Journal articles pasteur-02445822v1
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Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

Guillaume Borrel , Paul W O 'Toole , Hugh Harris , Pierre Peyret , Jean-François Brugere et al.
Genome Biology and Evolution, 2013, 5 (10), pp.1769 - 1780. ⟨10.1093/gbe/evt128⟩
Journal articles hal-01612746v1
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The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey , Jeremie Denonfoux , Faouzi Jaziri , Nicolas Parisot , Mohiedine Missaoui et al.
PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩
Journal articles hal-01612757v1
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Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

Guillaume Borrel , Hugh Mb Harris , William Tottey , A. Mihajlovski , Nicolas Parisot et al.
Journal of Bacteriology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩
Journal articles hal-01612754v1

Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics

Jean-François Brugère , Agnès Mihajlovski , Mohieddine Missaoui , Pierre Peyret
Expert Review of Molecular Diagnostics, 2009, 9 (4), pp.353-65. ⟨10.1586/erm.09.16⟩
Journal articles hal-00529610v1

A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

Jean-François Brugere , Agnès Mihajlovski , Monique Alric , Jean-François Brugère
Research in Microbiology, 2008, 159 (7-8), pp.516 - 521. ⟨10.1016/j.resmic.2008.06.007⟩
Journal articles hal-01612747v1
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Characterisation and expression of phospholipases B from the opportunistic fungus Aspergillus fumigatus

Da-Kang Shen , Ali Dehghan Noodeh , Abdolhassan Kazemi , Renée Grillot , Geoff Robson et al.
FEMS Microbiology Letters, 2004, 239 (1), pp.87 - 93. ⟨10.1016/j.femsle.2004.08.019⟩
Journal articles hal-01612756v1
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In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes

Jean-François Brugère , Emmanuel Cornillot , Guy Méténier , Christian Vivarès
Nucleic Acids Research, 2000, 28 (10), pp.48e - 48. ⟨10.1093/nar/28.10.e48⟩
Journal articles hal-01612762v1
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Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes

Jean-François Brugère , Emmanuel Cornillot , Guy Méténier , Aaron Bensimon , Christian Vivarès et al.
Nucleic Acids Research, 2000, 28 (10), pp.2026 - 2033. ⟨10.1093/nar/28.10.2026⟩
Journal articles hal-01612753v1
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Archaea microbial candidates in next-generation probiotics development

Jean François Brugere , Wajdi Ben Hania , Marie-Edith Arnal , Céline Ribière , Nathalie Ballet et al.
9. Meeting on Probiotics, Prebiotics and New Foods, Nutraceuticals and Botanicals for Nutrition and Human and Microbiota, Sep 2017, Rome, Italy. ⟨10.1097/MCG.0000000000001043⟩
Conference papers hal-02737967v1

Le concept "Archaebiotics", vers de nouveaux probiotiques préventifs des maladies cardiovasculaires ?

Jean-François Brugère , Guillaume Borrel , Nadia Gaci , William Tottey , Monique Alric et al.
6. Journée scientifique du CNRH Auvergne, Centre de Recherche en Nutrition Humaine (CRNH). Clermont-Ferrand, FRA., Nov 2013, Clermont - Ferrand, France. pp.11-11
Conference papers hal-01056810v1