Alexandra CALTEAU
- Analyse Bio-Informatique pour la Génomique et le Métabolisme (LABGeM)
Publications
Publications
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Integrating complex pangenome graphs2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW), May 2024, Utrecht, New Zealand. pp.350-354, ⟨10.1109/ICDEW61823.2024.00052⟩ |
Development of methods and tools in pangenomics for analysis and services in microbial genomicsMethods for Interfacing with Graphs of Genomic Sequences, Camille Marchet; Guillaume Gautreau; Thomas Derrien, Sep 2024, Lille (Villeneuve d'Ascq), France |
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Exploration and curation of microbial genomes using the MicroScope platformPyrococcus abyssi 20 years, Violette Da Cunha; Patrick Forterre, Sep 2023, Evry-Courcouronnes, France |
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PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesThe local pangenome, Oct 2023, Alicante, Spain |
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PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesISMB/ECCB 2023, ISCB ECCB, Jul 2023, Lyon, France |
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The MicroScope platform: 20 years of expertise in microbial genomicsThe 20th MicroScope anniversary, Alexandra Calteau; David Vallenet, Sep 2023, Evry-Courcouronnes, France |
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PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomesThe local pangenome, Oct 2023, Alicante, Spain |
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panRGP: a pangenome-based method to predict genomic islands and explore their diversityJOBIM 2021 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris (virtual), France |
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panRGP: a pangenome-based method to predict genomic islands and explore their diversitythe 19th European Conference on Computational Biology, ECCB 2020, Aug 2020, Barcelona (Virtual), Spain |
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysisSéminaire CBIB, Macha Nikolski; Alexis Groppi, Feb 2020, Bordeaux, France |
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Comparative microbial pangenomics to explore mobilome dynamicsThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom |
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom |
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Unités de plasticité dans le génome de Photorhabdus : des réarrangements chromosomiques à l’échelle du temps du laboratoire à l’évolution des espèces.8. Congrès National de la Société Française de Microbiologie (SFM), Jun 2010, Palais des Congrès, Parc Chanot, Marseille, France |
Analyzing prokaryotic transcriptomics in the light of genome data with the MicroScope platformFrancis Martin; Stephane Uroz. Microbial Environmental Genomics (MEG), 2605, Springer US, pp.241-270, 2022, Methods in Molecular Biology, 978-1-0716-2871-3. ⟨10.1007/978-1-0716-2871-3_13⟩ |
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Genomics of NRPS/PKS Biosynthetic Gene Clusters in CyanobacteriaDmitry A. Los. Cyanobacteria: Omics and Manipulation, Caister Academic Press, pp.55-74, 2017, 978-1-910190-55-5 (print) ; 978-1-910190-56-2 (e-book). ⟨10.21775/9781910190555.03⟩ |
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panModule: detecting conserved modules in the variable regions of a pangenome graph2021 |
La génomique comparée à l’ère de la pangénomique : méthodes, analyses et services en génomique microbienneBio-Informatique, Biologie Systémique [q-bio.QM]. Université paris saclay, 2024 |