Alexandra CALTEAU
- Analyse Bio-Informatique pour la Génomique et le Métabolisme (LABGeM)
Publications
Publications
Development of methods and tools in pangenomics for analysis and services in microbial genomicsMethods for Interfacing with Graphs of Genomic Sequences, Camille Marchet; Guillaume Gautreau; Thomas Derrien, Sep 2024, Lille (Villeneuve d'Ascq), France |
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Integrating complex pangenome graphs2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW), May 2024, Utrecht, New Zealand. pp.350-354, ⟨10.1109/ICDEW61823.2024.00052⟩ |
PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesThe local pangenome, Oct 2023, Alicante, Spain |
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Exploration and curation of microbial genomes using the MicroScope platformPyrococcus abyssi 20 years, Violette Da Cunha; Patrick Forterre, Sep 2023, Evry-Courcouronnes, France |
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PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesISMB/ECCB 2023, ISCB ECCB, Jul 2023, Lyon, France |
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The MicroScope platform: 20 years of expertise in microbial genomicsThe 20th MicroScope anniversary, Alexandra Calteau; David Vallenet, Sep 2023, Evry-Courcouronnes, France |
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PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomesThe local pangenome, Oct 2023, Alicante, Spain |
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panRGP: a pangenome-based method to predict genomic islands and explore their diversityJOBIM 2021 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris (virtual), France |
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panRGP: a pangenome-based method to predict genomic islands and explore their diversitythe 19th European Conference on Computational Biology, ECCB 2020, Aug 2020, Barcelona (Virtual), Spain |
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysisSéminaire CBIB, Macha Nikolski; Alexis Groppi, Feb 2020, Bordeaux, France |
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom |
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Comparative microbial pangenomics to explore mobilome dynamicsThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom |
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Unités de plasticité dans le génome de Photorhabdus : des réarrangements chromosomiques à l’échelle du temps du laboratoire à l’évolution des espèces.8. Congrès National de la Société Française de Microbiologie (SFM), Jun 2010, Palais des Congrès, Parc Chanot, Marseille, France |
Analyzing prokaryotic transcriptomics in the light of genome data with the MicroScope platformFrancis Martin; Stephane Uroz. Microbial Environmental Genomics (MEG), 2605, Springer US, pp.241-270, 2022, Methods in Molecular Biology, 978-1-0716-2871-3. ⟨10.1007/978-1-0716-2871-3_13⟩ |
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Genomics of NRPS/PKS Biosynthetic Gene Clusters in CyanobacteriaDmitry A. Los. Cyanobacteria: Omics and Manipulation, Caister Academic Press, pp.55-74, 2017, 978-1-910190-55-5 (print) ; 978-1-910190-56-2 (e-book). ⟨10.21775/9781910190555.03⟩ |
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panModule: detecting conserved modules in the variable regions of a pangenome graph2021 |
La génomique comparée à l’ère de la pangénomique : méthodes, analyses et services en génomique microbienneBio-Informatique, Biologie Systémique [q-bio.QM]. Université paris saclay, 2024 |