Sorina POP

73
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Publications

Image document

Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset

Olivier Commowick , Michaël Kain , Romain Casey , Roxana Ameli , Jean-Christophe Ferré et al.
NeuroImage, 2021, 244, pp.1-8. ⟨10.1016/j.neuroimage.2021.118589⟩
Article dans une revue hal-03358961 v1
Image document

MicroVIP: Microscopy image simulation on the Virtual Imaging Platform

Ahmad Ali , Guillaume Vanel , Sorina Camarasu-Pop , Axel Bonnet , Carole Frindel et al.
SoftwareX, 2021, 16, pp.100854. ⟨10.1016/j.softx.2021.100854⟩
Article dans une revue hal-03619436 v1
Image document

A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients

Yitian Zhou , Sophie Giffard-Roisin , Mathieu de Craene , Sorina Camarasu-Pop , Jan d'Hooge et al.
IEEE Transactions on Medical Imaging, 2018, 37 (3), pp.741-754. ⟨10.1109/TMI.2017.2708159⟩
Article dans une revue hal-01533366 v1

Boutiques: a flexible framework to integrate command-line applications in computing platforms

Tristan Glatard , Gregory Kiar , Tristan Aumentado-Armstrong , Natacha Beck , Pierre Bellec et al.
GigaScience, 2018, 7 (5), ⟨10.1093/gigascience/giy016⟩
Article dans une revue hal-01817780 v1
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The first MICCAI challenge on PET tumor segmentation

Mathieu Hatt , Baptiste Laurent , Anouar Ouahabi , Hadi Fayad , Shan Tan et al.
Medical Image Analysis, 2018, 44, pp.177-195. ⟨10.1016/j.media.2017.12.007⟩
Article dans une revue hal-01659162 v1
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Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Olivier Commowick , Audrey Istace , Michael Kain , Baptiste Laurent , Florent Leray et al.
Scientific Reports, 2018, 8 (1), pp.13650. ⟨10.1038/s41598-018-31911-7⟩
Article dans une revue inserm-01847873 v3
Image document

Software architectures to integrate workflow engines in science gateways

Tristan Glatard , Marc-Etienne Rousseau , Sorina Camarasu-Pop , Reza Adalat , Natacha Beck et al.
Future Generation Computer Systems, 2017, 75, pp.239-255. ⟨10.1016/j.future.2017.01.005⟩
Article dans une revue hal-01572420 v1

Combining analytical modeling, realistic simulation and real experimentation for the optimization of Monte-Carlo applications on the European Grid Infrastructure

Sorina Camarasu-Pop , Tristan Glatard , Hugues Benoit-Cattin
Future Generation Computer Systems, 2016, 57, pp.13-23. ⟨10.1016/j.future.2015.11.002⟩
Article dans une revue hal-01272336 v1

Standardized evaluation system for left ventricular segmentation algorithms in 3D echocardiography

Olivier Bernard , J.G.H. Bosch , B Heyde , M. Alessandrini , D. Barbosa et al.
IEEE Transactions on Medical Imaging, 2016, 35 (4), pp.967-977. ⟨10.1109/TMI.2015.2503890⟩
Article dans une revue hal-01272359 v1

Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing

B. Leporq , S. Camarasu-Pop , E. E. Davila-Serrano , F. Pilleul , O. Beuf
Journal of Medical Engineering, 2013, 2013, pp.ID 471682. ⟨10.1155/2013/471682⟩
Article dans une revue hal-00797856 v1

Monte-Carlo Simulation on Heterogeneous Distributed Systems: a Computing Framework with Parallel Merging and Checkpointing Strategies

S. Camarasu-Pop , T. Glatard , R. Ferreira da Silva , P. Gueth , D. Sarrut et al.
Future Generation Computer Systems, 2013, 3, pp.728-738. ⟨10.1016/j.future.2012.09.003⟩
Article dans une revue istex hal-00797962 v1
Image document

A virtual imaging platform for multi-modality medical image simulation.

Tristan Glatard , Carole Lartizien , Bernard Gibaud , Rafael Ferreira da Silva , Germain Forestier et al.
IEEE Transactions on Medical Imaging, 2013, 32 (1), pp.110-8. ⟨10.1109/TMI.2012.2220154⟩
Article dans une revue inserm-00762497 v1

A model of pilot-job resource provisioning on production grids

T Glatard , Sorina Camarasu-Pop
Parallel Computing, 2011, 37, pp.684-692. ⟨10.1016/j.parco.2011.04.001⟩
Article dans une revue istex hal-01950480 v1

Dynamic partitioning of GATE Monte-Carlo simulations on EGEE

Sorina Camarasu-Pop , T Glatard , J. T. Moscicki , H. Benoit-Cattin , D. Sarrut
Journal of Grid Computing, 2010, 8 (2), pp.241-259. ⟨10.1007/s10723-010-9153-0⟩
Article dans une revue istex hal-01950481 v1
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The Impact of Hardware Variability on Applications Packaged with Docker and Guix: a Case Study in Neuroimaging

Gaël Vila , Emmanuel Medernach , Inés Gonzalez , Axel Bonnet , Yohan Chatelain et al.
ACM REP'24, ACM, Jun 2024, Rennes, France. pp.75-84, ⟨10.1145/3641525.3663626⟩
Communication dans un congrès hal-04480308 v2
Image document

Computational Reproducibility in Metabolite Quantification Applied to Short Echo Time in Vivo MR Spectroscopy

Gaël Vila , Axel Bonnet , Fabien Chauveau , Sophie Gaillard , Françoise Durand-Dubief et al.
20th IEEE International Symposium on Biomedical Imaging, ISBI 2023, IEEE, Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230744⟩
Communication dans un congrès hal-04006152 v1
Image document

Reproducibility of Tumor Segmentation Outcomes with a Deep Learning Model

Morgane Des Ligneris , Axel Bonnet , Yohan Chatelain , Tristan Glatard , Michaël Sdika et al.
International Symposium on Biomedical Imaging (ISBI), Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230482⟩
Communication dans un congrès hal-04006057 v1
Image document

Deploying container-based applications on EGI with VIP

Axel Bonnet , Sandesh Patil , Sorina Camarasu-Pop , Tristan Glatard
JCAD 2022 - Journées Calcul Données, Oct 2022, Dijon, France
Communication dans un congrès hal-03975757 v1
Image document

Projet ReproVIP

Gaël Vila , Axel Bonnet , Carole Frindel , Helene Ratiney , Frédéric Cervenansky et al.
Journée Reproductibilité Labex PRIMES, Dec 2022, Lyon, France
Communication dans un congrès hal-04006460 v1
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MSSEG-2: Un challenge d'imagerie médicale sur VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat et al.
JCAD 2021, Dec 2021, En ligne, France
Communication dans un congrès hal-03708108 v1
Image document

MSSEG-2: A medical imaging challenge on VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat et al.
EGI Conference 2021, Oct 2021, En ligne, France
Communication dans un congrès hal-03708105 v1
Image document

Exploiting GPUs on distributed infrastructures for medical imaging applications with VIP and DIRAC

Sorina Camarasu-Pop , Carole Lartizien , Thomas Grenier , Axel Bonnet , Pascal Wassong et al.
42nd international convention on information and communication technology, electronics and microelectronics, May 2019, Opatija, Croatia. pp.190-195, ⟨10.23919/mipro.2019.8757075⟩
Communication dans un congrès hal-02327867 v1
Image document

Enabling Large Scale Data Production for OpenDose with GATE on the EGI Infrastructure

Maxime Chauvin , Gilles Mathieu , Sorina Camarasu-Pop , Axel Bonnet , Manuel Bardiès et al.
2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), May 2019, Larnaca, France. pp.658-665, ⟨10.1109/CCGRID.2019.00084⟩
Communication dans un congrès inserm-02869860 v1
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Open research: linking the bits and pieces with OpenAIRE-connect

Camille Maumet , Xavier Rolland , Axel Bonnet , Sorina Camarasu-Pop , Argiro Kokogiannaki et al.
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-6
Communication dans un congrès inserm-02151177 v1
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Open Science for the Neuroinformatics community

Sorina Camarasu-Pop , Axel Bonnet , Camille Maumet , Michael Kain , Christian Barillot et al.
DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Communication dans un congrès inserm-01846994 v1

Evaluation through Realistic Simulations of File Replication Strategies for Large Heterogeneous Distributed Systems

Anchen Chai , Sorina Camarasu-Pop , Tristan Glatard , Hugues Benoit-Cattin , Frederic Suter
Europar 2018 - 24th International European Conference on Parallel and Distributed Computing ; Workshop HeteroPar 2018, Aug 2018, Turin, Italy. pp.409-420, ⟨10.1007/978-3-030-10549-5_32⟩
Communication dans un congrès hal-01887369 v1
Image document

Interoperability with Boutiques and CARMIN

Sorina Camarasu-Pop , Axel Bonnet , Camille Maumet , Michael Kain , Christian Barillot et al.
DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Communication dans un congrès inserm-01846997 v1
Image document

Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation

Anchen Chai , Mohammad-Mahdi Bazm , Sorina Camarasu-Pop , Tristan Glatard , Hugues Benoit-Cattin et al.
17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing., May 2017, Madrid, Spain
Communication dans un congrès hal-01452694 v1

Protocole de caractérisation d'antenne radiofréquence pour l'IRM

L. Mahieu-Williame , S. Gaillard , D. Grenier , R. Bolbos , J.B. Langlois et al.
SFRMBM, 2017, Bordeaux, France
Communication dans un congrès hal-01905449 v1
Image document

FG-SOL : un nouveau service pour la préservation et la réutilisation des logiciels de la recherche

Teresa Gomez-Diaz , Vincent Legoll , Jérôme Pansanel , Sorina Pop , Genevieve Romier et al.
JRES (Journées réseaux de l'enseignement et de la recherche ) 2017, Renater, Nov 2017, Nantes, France
Communication dans un congrès hal-04806283 v2
Image document

FG-Cloud : un service de cloud computing fédéré pour le calcul scientifique

Cécile Cavet , Vincent Legoll , Jérôme Pansanel , Sorina Camarasu-Pop , Adrien Ramparison et al.
Journées Réseaux de l’Enseignement et de la Recherche.(JRES ) 2017, Nov 2017, Nantes, France
Communication dans un congrès hal-02019194 v1

Challenge on Endocardial Three-dimensional Ultrasound Segmentation (CETUS)

Olivier Bernard , Brecht Heyde , Martino Alessandrini , Daniel Barbosa , Sorina Camarasu-Pop et al.
Challenge on Endocardial Three-dimensional Ultrasound Segmentation, Sep 2014, Boston, United States
Communication dans un congrès hal-02048165 v1
Image document

VIP et GateLab : retour d'expérience

Sorina Pop , Rafael Ferreira da Silva , Tristan Glatard
JRES (Journées réseaux de l'enseignement et de la recherche ) 2013, Renater, Dec 2013, Montpellier, France
Communication dans un congrès hal-04805091 v1

Simulating Application Workflows and Services Deployed on the European Grid Infrastructure

S. Camarasu-Pop , T. Glatard , H. Benoit-Cattin
13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, May 2013, Delft, Netherlands. pp.18-25, ⟨10.1109/CCGrid.2013.13⟩
Communication dans un congrès hal-00843917 v1

CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries

C. Mouton , E. E. Dávila Serrano , F. Cervenansky , S. Camarasu-Pop , E. Correa et al.
European BioImage Analysis Symposium 2013, Oct 2013, Barcelone, Spain
Communication dans un congrès hal-00921503 v1

CreaTools: A Framework to Develop Medical Image Processing Software: Application to Simulate Pipeline Stent Deployment in Intracranial Vessels with Aneurysms

E. E. Dávila Serrano , L. Guigues , J.-P. Roux , F. Cervenansky , S. Camarasu-Pop et al.
International Conference on Computer Vision and Graphics, Sep 2012, Warsaw, Poland. pp.55-62, ⟨10.1007/978-3-642-33564-8_7⟩
Communication dans un congrès hal-00829662 v1

CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms

E. E. Dávila Serrano , L. Guigues , F. Cervenansky , S. Camarasu-Pop , J. G. Riveros Reyes et al.
Int. Conf. Comput. Vision. Graphics., Sep 2012, Warsaw, Poland. pp.55-62
Communication dans un congrès hal-00842740 v1

CreaTools: applications and development framework for medical image-processing software

E. E. Dávila Serrano , L. Guigues , J.P. Roux , F. Cervenansky , C. Mouton et al.
13th Libre Software Meeting, Jul 2012, Genève, Switzerland
Communication dans un congrès hal-00831278 v1
Image document

Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI

T. Glatard , A. Marion , H. Benoit-Cattin , S. Camarasu-Pop , P. Clarysse et al.
IEEE International Symposium on Biomedical Imaging (ISBI), May 2012, Barcelona, Spain. pp.98-101, ⟨10.1109/ISBI.2012.6235493⟩
Communication dans un congrès hal-00830243 v1
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Diffusion MRI Simulation with the Virtual Imaging Platform

Lihui Wang , Sorina Camarasu-Pop , Glatard Tristan , Yue-Min Zhu , Isabelle E. Magnin
journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France
Communication dans un congrès hal-00766081 v1

CreaTools: applications and development framework for medical image-processing software

E. E. Dávila Serrano , L. Guigues , J. P. Roux , F. Cervenansky , S. Camarasu-Pop et al.
ISBI Workshop on Open Source Medical Image Analysis Software, Apr 2012, Barcelona, Spain
Communication dans un congrès hal-00831272 v1
Image document

Instance nationale et multi-communauté de DIRAC pour France Grilles

Luisa Arrabito , David Bouvet , Sorina Camarasu-Pop , Yonny Cardenas , Nicolas Clémentin et al.
journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France
Communication dans un congrès hal-00766084 v1

3D-liver MR-DCE imaging for quantitative perfusion mapping using EGI grid

B. Leporq , Sorina Camarasu-Pop , F. Pilleul , O. Beuf
Colloque Recherche en Imagerie et Technologies pour la Santé (RITS), 2011, Rennes, France
Communication dans un congrès hal-01950477 v1
Image document

Calcul distribué pour l'imagerie médicale

Sorina Pop , Rafael Ferreira da Silva , Tristan Glatard
JRES (Journées réseaux de l'enseignement et de la recherche ) 2011, Renater, Nov 2011, Toulouse, France
Communication dans un congrès hal-04804557 v1

PBS proton treatment plan simulation with the GATE-Lab

P. Gueth , Sorina Camarasu-Pop , T Glatard , L. Grevillot , D. Sarrut
50th International PTCOG meeting (Particle Therapy Co-Operative Group), 2011, Philadelphia, US, Unknown Region
Communication dans un congrès hal-01950478 v1
Image document

Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)

Adrien Marion , Germain Forestier , Hugues Benoit-Cattin , Sorina Camarasu-Pop , Patrick Clarysse et al.
International Symposium on Computer-Based Medical Systems (CBMS), Jun 2011, Bristol, United Kingdom. pp.1-6, ⟨10.1109/cbms.2011.5999141⟩
Communication dans un congrès hal-03813315 v1
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Infrastructure DIRAC pour les Communautés Pluridisciplinaires

A. Tsaregorodtsev , V. Hamar , M. Sapunov , T. Glatard , S. Camarasu-Pop et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Communication dans un congrès hal-00653025 v1
Image document

Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform

Rafael Ferreira da Silva , Sorina Camarasu-Pop , Baptiste Grenier , Vanessa Hamar , David Manset et al.
HealthGrid 2011, Jun 2011, Bristol, United Kingdom. pp.1-10
Communication dans un congrès hal-00677827 v1

3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent

B. Leporq , Sorina Camarasu-Pop , F. Pilleul , O. Beuf
ISMRM, 2011, Montreal, Canada. pp.2046
Communication dans un congrès hal-01950479 v1
Image document

Le calcul distribué : un outil pour l'imagerie médicale

Tristan Glatard , Rafael Ferreira da Silva , Sorina Camarasu-Pop
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Communication dans un congrès hal-00653015 v1

Overview of Medical Data Management Solutions for Research Communities

Sorina Camarasu-Pop , Frederic Cervenansky , Yonny Cardenas , Jean-Yves Nief , Hugues Benoit-Cattin
Cluster, Cloud and Grid Computing (CCGrid), 2010 10th IEEE/ACM International Conference on, 2010, Unknown, Unknown Region. pp.739--744
Communication dans un congrès hal-01792367 v1

Optimization of Mean-Shift scale parameters on the EGEE grid

T Li , Sorina Camarasu-Pop , T Glatard , T Grenier , H. Benoit-Cattin
Studies in health technology and informatics, Proceedings of Healthgrid 2010, 2010, Unknown, Unknown Region. pp.203-214, ⟨10.3233/978-1-60750-583-9-203⟩
Communication dans un congrès hal-01871246 v1

Two experiments with application-level quality of service on the EGEE grid

Pascal Calvat , Tristan Glatard , Sorina Camarasu-Pop , Ching Chuen Teck Mark , Tan Wen-Jun
GMAC '10, Jun 2010, Washington, United States. pp.ISBN: 978-1-4503-0100-8, ⟨10.1145/1809029.1809031⟩
Communication dans un congrès hal-00622791 v1

A comparison between ARC and gLite for medical image processing on Grids

T Glatard , X. . Zhou , Sorina Camarasu-Pop , O. . Smirnova , H. . Muller
2nd workshop on Medical imaging on GRID, HPC and GPU infrastructures: achievements and perspectives (MICCAI-Grid), 2009, London, UK, Unknown Region
Communication dans un congrès hal-01950482 v1
Image document

Towards Production-level Cardiac Image Analysis with Grids

Ketan Maheshwari , Tristan Glatard , Joel Schaerer , Bertrand Delhay , Sorina Camarasu-Pop et al.
HealthGrid 2009, Jun 2009, Berlin, Germany. pp.31-40, ⟨10.3233/978-1-60750-027-8-31⟩
Communication dans un congrès hal-00677800 v1

Modelling pilot-job applications on production grids

T Glatard , Sorina Camarasu-Pop
7th international workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms (Heteropar 09), 2009, Delft, The, Netherlands
Communication dans un congrès hal-01950483 v1

Towards a Virtual Radiological Platform Based on a Grid Infrastructure

Sorina Camarasu-Pop , H. Benoit-Cattin , L. Guigues , P. Clarysse , O. Bernard et al.
Medical imaging on grids: achievements and perspectives (MICCAI Grid Workshop), 2008, New York, USA, Unknown Region. pp.85-95
Communication dans un congrès hal-01922371 v1

Grids for Content-Based Medical Image Indexing and Retrieval

Sorina Camarasu-Pop , H. Benoit-Cattin , J. Montagnat , D. Racoceanu
ICT4Health, Oncomedia, 2008, Manila, The, Philippines
Communication dans un congrès hal-01950484 v1
Image document

ReproVIP: Enhancing Reproducibility of Scientific Results in Medical Imaging

Gaël Vila , Axel Bonnet , Frédéric Cervenansky , Claire Mouton , Sorina Camarasu-Pop et al.
EGI Conference 2022, Sep 2022, Prague, France
Poster de conférence hal-03789321 v1
Image document

Deploying container-based applications on EGI with VIP

Sandesh Patil , Axel Bonnet , Sorina Camarasu-Pop , Tristan Glatard
EGI2022 - EGI conference, Sep 2022, Prague, Czech Republic. pp.1-1
Poster de conférence hal-03792703 v1
Image document

Protocole de caractérisation et de comparaison des SNR et volume de sensibilité des bobines en IRM

L Mahieu-Williame , S Gaillard , R Bolbos , J Langlois , J Verret et al.
Journées RMN du Grand Sud, Jul 2021, Clermont-Ferrand, France
Poster de conférence hal-03589555 v1

SNR and volume characterization of RF coils: A simple procedure and an automatic post-processing tool for a straightforward comparison

Laurent Mahieu-Williame , Sophie Gaillard , Denis Grenier , Radu Bolbos , Jean-Baptiste Langlois et al.
25th annual meeting & exhibition ISMRBM, Apr 2017, Honolulu, United States. pp.Abstract #3830, 2017
Poster de conférence hal-01693554 v1
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Research software services

Teresa Gomez-Diaz , Vincent Legoll , Jérôme Pansanel , Sorina Camarasu-Pop , Genevieve Romier
EGI 2017, May 2017, Catania, Italy. , 2017, ⟨10.5281/zenodo.1405606⟩
Poster de conférence hal-01806908 v1
Image document

FG-Cloud : un service de cloud computing fédéré pour le calcul scientifique

Cécile Cavet , Vincent Legoll , Jérôme Pansanel , Sorina Pop , Adrien Ramparison et al.
JRES (Journées réseaux de l'enseignement et de la recherche ) 2017, Nov 2017, Nantes, France. 2017
Poster de conférence hal-04806299 v1

Protocole de caractérisation d'antenne radiofréquence pour l'IRM

Laurent Mahieu-Williame , Sophie Gaillard , Denis Grenier , Radu Bolbos , Jean-Baptiste Langlois et al.
3ème Congrès de la SFRMBM, Mar 2017, Bordeaux, France
Poster de conférence hal-01560556 v1

PROTOCOLE DE CARACTERISATION DE CAPTEUR IRM

Laurent Mahieu-Williame , Sophie Gaillard , Denis Grenier , Radu Bolbos , Jean-Baptiste Langlois et al.
Recherche en Imagerie et Technologies pour la Santé (RITS) 2017, Mar 2017, Lyon, France
Poster de conférence hal-01505478 v1
Image document

Computational Reproducibility

Sorina Camarasu-Pop
3rd cycle. 12th SLEIGHT Science Event, Saint Etienne (FR), France. 2024
Cours hal-04649287 v1