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Cédric Midoux

Bioinfo
78%
Open access
37
Documents
Current affiliations
  • 1002496
  • 1002434
Researcher identifiers
  • IdHAL cedric-midoux
  • ORCID 0000-0002-7964-0929
  • Google Scholar : https://scholar.google.fr/citations?user=lAzGLCIAAAAJ&hl=fr
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Publications

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Study of a Pilot Scale Microbial Electrosynthesis Reactor for Organic Waste Biorefinery

Jiang-Hao Tian , Rémy Lacroix , Asim Ali Yaqoob , Chrystelle Bureau , Cédric Midoux et al.
Energies, 2023, 16 (2), pp.591. ⟨10.3390/en16020591⟩
Journal articles hal-03922462v1
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The electrochemical microbial tree: A new concept for wastewater treatment

Morgane Hoareau , Luc Etcheverry , Olivier Chapleur , Chrystelle Bureau , Cédric Midoux et al.
Chemical Engineering Journal, 2023, 454, pp.140295. ⟨10.1016/j.cej.2022.140295⟩
Journal articles hal-03851691v1
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Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

Pierre Ledormand , Nathalie Desmasures , Cédric Midoux , Olivier Rué , Marion Dalmasso et al.
Microorganisms, 2022, 10 (6), pp.1203. ⟨10.3390/microorganisms10061203⟩
Journal articles hal-03693766v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩
Journal articles hal-03727436v1

Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield

Lays Paulino Leonel , Ariane Bize , Mahendra Mariadassou , Cédric Midoux , Jerusa Schneider et al.
Blue-Green Systems, 2022, ⟨10.2166/bgs.2022.126⟩
Journal articles hal-03894086v1
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Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters

Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi et al.
Bioresource Technology, 2022, 346, pp.126612. ⟨10.1016/j.biortech.2021.126612⟩
Journal articles hal-03507080v1
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Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Cédric Midoux , Iolanda Cristina Silveira Duarte et al.
Environmental Technology, 2022, pp.1-42. ⟨10.1080/09593330.2022.2052361⟩
Journal articles hal-03634517v1
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Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Cédric Midoux , Olivier Rué et al.
Viruses, 2022, 14 (8), pp.1620. ⟨10.3390/v14081620⟩
Journal articles hal-03738602v1

Molecular approaches to uncover phage-lactic acid bacteria interactions in a model community simulating fermented beverages

Pierre Ledormand , Nathalie Desmasures , Benoit Bernay , Didier Goux , Oliver Rué et al.
Food Microbiology, 2022, 107, pp.104069. ⟨10.1016/j.fm.2022.104069⟩
Journal articles hal-03696589v1
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A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data

Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi et al.
Data in Brief, 2022, 41, pp.107960. ⟨10.1016/j.dib.2022.107960⟩
Journal articles hal-03585428v1
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

Núria Mach , Cédric Midoux , Sébastien Leclercq , Samuel Pennarun , Laurence Le Moyec et al.
Communications Biology, 2022, 5, pp.1032. ⟨10.1038/s42003-022-03977-7⟩
Journal articles hal-03794437v2
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Methane production and microbial community acclimation of five manure inocula during psychrophilic anaerobic digestion of swine manure

Thomas Lendormi , Kaïs Jaziri , Fabrice Béline , Sophie Leroux , Chrystelle Bureau et al.
Journal of Cleaner Production, 2022, 340, 11 p. ⟨10.1016/j.jclepro.2022.130772⟩
Journal articles hal-03574579v1
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Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater

Morgane Hoareau , Benjamin Erable , Olivier Chapleur , Cédric Midoux , Chrystelle Bureau et al.
Bioresource Technology, 2021, 326, pp.0. ⟨10.1016/j.biortech.2021.124663⟩
Journal articles hal-03129147v1

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux et al.
Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩
Journal articles hal-03211333v1
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Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands

Joanna Rogińska , Michel Perdicakis , Cédric Midoux , Théodore Bouchez , Christelle Despas et al.
Bioelectrochemistry, 2021, 142, pp.107895. ⟨10.1016/j.bioelechem.2021.107895⟩
Journal articles hal-03318075v1
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Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. Lejal , J. Chiquet , J. Aubert , S. Robin , A. Estrada-Peña et al.
Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩
Journal articles hal-03287263v1
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Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter

Timothé Philippon , Jianghao Tian , Chrystelle Bureau , Cédric Chaumont , Cédric Midoux et al.
Bioelectrochemistry, 2021, 140, pp.107819. ⟨10.1016/j.bioelechem.2021.107819⟩
Journal articles hal-03196902v1
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Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Ariane Bize , Cédric Midoux , Mahendra Mariadassou , Sophie Schbath , Patrick Forterre et al.
BMC Genomics, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩
Journal articles hal-03176011v1

The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa

Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino
Antibiotics, 2020, 9 (6), ⟨10.3390/antibiotics9060339⟩
Journal articles hal-02890481v1
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Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol

Simon Poirier , Sébastien Dejean , Cédric Midoux , Kim-Anh Lê Cao , Olivier Chapleur et al.
Bioresource Technology, 2020, 316, pp.123952. ⟨10.1016/j.biortech.2020.123952⟩
Journal articles hal-02907466v1

Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD

Alessandra Danile de Lira , Caroline Isabel Kothe , Olivier Rué , Cédric Midoux , Michele Bertoni Mann et al.
Journal of Applied Microbiology, 2020, 128 (5), pp.1448-1459. ⟨10.1111/jam.14566⟩
Journal articles hal-02903118v1
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Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Emilie Lejal , Agustin Estrada-Peña , Maud Marsot , Jean-Francois J.-F. Cosson , Olivier Rué et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩
Journal articles hal-02790980v1

Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

Libera Latino , Cédric Midoux , Gilles Vergnaud , Christine Pourcel
PLoS ONE, 2019, 14 (4), pp.e0215456. ⟨10.1371/journal.pone.0215456⟩
Journal articles hal-02173138v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué et al.
Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩
Journal articles hal-01888286v1

Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites

Gilles Vergnaud , Cédric Midoux , Yann Blouin , Maria Bourkaltseva , Victor Krylov et al.
Viruses, 2018, 10 (5), ⟨10.3390/v10050245⟩
Journal articles hal-02184815v1

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus

Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino
Journal of General Virology, 2017, 98 (8), pp.2181 - 2189. ⟨10.1099/jgv.0.000883⟩
Journal articles hal-01879191v1

Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

Christine Pourcel , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Libera Latino et al.
PLoS ONE, 2017, 12 (1), pp.e0169684. ⟨10.1371/journal.pone.0169684⟩
Journal articles hal-01879155v1

Complete Genome Sequence of PM105, a New Pseudomonas aeruginosa B3-Like Transposable Phage.

Christine Pourcel , Cédric Midoux , Maria Bourkaltseva , Elena Pleteneva , Victor Krylov et al.
Genome Announcements, 2016, 4 (2), ⟨10.1128/genomeA.01543-15⟩
Journal articles hal-01443828v1

Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Christine Pourcel , Cédric Midoux , Libera Latino , Marie-Agnès Petit , Gilles Vergnaud et al.
Genome Announcements, 2016, 4 (6), ⟨10.1128/genomeA.00916-16⟩
Journal articles hal-01439325v1
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Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa

Libera Latino , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Christine Pourcel et al.
Microbiology, 2016, ⟨10.1099/mic.0.000263⟩
Journal articles hal-01280758v1

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Christiane Essoh , Libera Latino , Cédric Midoux , Yann Blouin , Guillaume Loukou et al.
PLoS ONE, 2015, 10 (6), pp.e0130548. ⟨10.1371/journal.pone.0130548⟩
Journal articles hal-01188392v1
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Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics.

Katja Reichel , Valentin Bahier , Cédric Midoux , Nicolas Parisey , Jean-Pierre Masson et al.
Algorithms for Molecular Biology, 2015, 10 (1), pp.31. ⟨10.1186/s13015-015-0061-5⟩
Journal articles hal-01286505v1
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Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation.

Cédric Midoux , Chrystelle Bureau , Baptiste Quentin , Olivier Chapleur
MICROBES symposium, Sep 2022, Orsay, France.
Conference poster hal-03765009v1
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New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria

Thomas Paillet , Julien Lossouarn , Inès Pedros , Cédric Midoux , Olivier Rué et al.
Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France
Conference poster hal-03441698v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux et al.
JOBIM, Jun 2020, Montpellier, France
Conference poster hal-02902758v1
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Feedback on a c omparative metatranscriptomic analysis

Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué et al.
JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
Conference poster hal-02735859v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez et al.
JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Conference poster hal-02737257v1