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Céline Brochier-Armanet

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Description of a new genus of the Pectobacteriaceae family isolated from water in coastal brackish wetlands of the French Camargue region, Prodigiosinella gen. nov., including the new species Prodigiosinella aquatilis sp. nov

Nicole Hugouvieux-Cotte-Pattat , Jean-Pierre Flandrois , Jérôme Briolay , Sylvie Reverchon , Céline Brochier-Armanet
Systematic and Applied Microbiology, 2024, 47 (2-3), pp.126497. ⟨10.1016/j.syapm.2024.126497⟩
Journal articles hal-04476288v1
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Deciphering evolutionary trajectories of lactate dehydrogenases provides new insights into allostery.

Adeline Robin , Céline Brochier-Armanet , Quentin Bertrand , Caroline Barette , Eric Girard
Molecular Biology and Evolution, 2023, msad223, ⟨10.1093/molbev/msad223⟩
Journal articles hal-04235286v1
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A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea

Monique Aouad , Jean-Pierre Flandrois , Frédéric Jauffrit , Manolo Gouy , Simonetta Gribaldo
BMC Ecology and Evolution, 2022, 22 (1), pp.1-12. ⟨10.1186/s12862-021-01952-0⟩
Journal articles hal-03514913v1
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Protein conformational space at the edge of allostery: turning a nonallosteric malate dehydrogenase into an “allosterized” enzyme using evolution-guided punctual mutations

Antonio Iorio , Céline Brochier-Armanet , Caroline Mas , Fabio Sterpone , Dominique Madern
Molecular Biology and Evolution, 2022, 39 (9), pp.msac186. ⟨10.1093/molbev/msac186⟩
Journal articles hal-03781769v1
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Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes

Djivan Prentout , Natasa Stajner , Andreja Cerenak , Theo Tricou , Celine Brochier-Armanet
New Phytologist, 2021, 231 (4), pp.1599-1611. ⟨10.1111/nph.17456⟩
Journal articles hal-03254304v1
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Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance

Jan Felix , Claire Siebert , Juila Novion Ducassou , Jérôme Nigou , Pierre Simon Garcia
Scientific Reports, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩
Journal articles hal-03118173v1

The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study

Michel Lecocq , Mathieu Groussin , Manolo Gouy , Celine Brochier-Armanet
Molecular Biology and Evolution, 2021, 38 (5), pp.1761-1776. ⟨10.1093/molbev/msaa312⟩
Journal articles hal-03118165v1
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A Comprehensive Evolutionary Scenario of Cell Division and Associated Processes in the Firmicutes

Pierre Garcia , Wandrille Duchemin , Jean-Pierre Flandrois , Simonetta Gribaldo , Christophe Grangeasse
Molecular Biology and Evolution, 2021, 38 (6), pp.2396-2412. ⟨10.1093/molbev/msab034⟩
Journal articles hal-03293358v1
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The TERB1-TERB2-MAJIN complex of mouse meiotic telomeres dates back to the common ancestor of metazoans

Irene da Cruz , Celine Brochier-Armanet , Ricardo Benavente
BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01612-9⟩
Journal articles hal-03118158v1

Evolutionary relationships between Archaea and eukaryotes

Simonetta Gribaldo , Celine Brochier-Armanet
Nature Ecology & Evolution, 2020, 4, pp.20-21. ⟨10.1038/s41559-019-1073-1⟩
Journal articles pasteur-02445585v1

Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum)

Nicole Hugouvieux‐cotte‐pattat , Celine Brochier-Armanet , Jean-Pierre Flandrois , Sylvie Reverchon
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (8), pp.4508-4514. ⟨10.1099/ijsem.0.004306⟩
Journal articles hal-03103453v1
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Hepatitis B virus preS2Δ38–55 variants: A newly identified risk factor for hepatocellular carcinoma

Damien Cohen , Sumantra Ghosh , Yusuke Shimakawa , Njie Ramou , Pierre Simon Garcia
JHEP Reports Innovation in Hepatology, 2020, 2 (5), pp.100144. ⟨10.1016/j.jhepr.2020.100144⟩
Journal articles pasteur-03697731v1

GeneSpy, a user-friendly and flexible genomic context visualizer

Pierre Simon Garcia , Frédéric Jauffrit , Christophe Grangeasse , Céline Brochier-Armanet
Bioinformatics, 2019, 35 (2), pp.329-331. ⟨10.1093/bioinformatics/bty459⟩
Journal articles hal-02388605v1
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Evolutionary placement of Methanonatronarchaeia

Monique Aouad , Guillaume Borrel , Céline Brochier-Armanet , Simonetta Gribaldo
Nature Microbiology, 2019, ⟨10.1038/s41564-019-0359-z⟩
Journal articles pasteur-02059654v1
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The bacterial MrpORP is a novel Mrp/NBP35 protein involved in iron-sulfur biogenesis

Romain Pardoux , Anouchka Fiévet , Cíntia Carreira , Céline Brochier-Armanet , Odile Valette
Scientific Reports, 2019, 9 (1), pp.360-373. ⟨10.1038/s41598-018-37021-8⟩
Journal articles hal-02186929v1
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Structure, Function, and Evolution of the Pseudomonas aeruginosa Lysine Decarboxylase LdcA

Eaazhisai Kandiah , Diego Carriel , Pierre Simon Garcia , Jan Felix , Manuel Banzhaf
Journal articles hal-02345384v1
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Francisella tularensis: FupA mutation contributes tofluoroquinolone resistance by increasing vesicle secretion and biofilm formation

Claire Siebert , Helena Lindgren , Sabrina Ferré , Corinne Villers , Sandrine Boisset
Emerging microbes & infections, 2019, 8 (1), pp.808-822. ⟨10.1080/22221751.2019.1615848⟩
Journal articles hal-03019231v1
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Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation

Lorine Bethencourt , Hasna Boubakri , Najwa Taïb , Philippe Normand , J. Armengaud
Research in Microbiology, 2019, 170 (4-5), pp.202-213. ⟨10.1016/j.resmic.2019.04.002⟩
Journal articles hal-02309396v1
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The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity

Alexandre Duprey , Najwa Taïb , Simon Leonard , Tiffany Garin , Jean-Pierre Flandrois
Environmental Microbiology, 2019, 21 (8), pp.2809-2835. ⟨10.1111/1462-2920.14627⟩
Journal articles hal-02099020v1
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Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon

Jean-Pierre Flandrois , Céline Brochier-Armanet , Jérôme Briolay , Danis Abrouk , Guillaume P Schwob
Research in Microbiology, 2019, 170 (6-7), pp.280-287. ⟨10.1016/j.resmic.2019.06.005⟩
Journal articles hal-02327832v1

Description Osteo-Oto-Hepato-Enteric (O2HE) syndrome, a new recessive autosomal syndrome secondary to loss of function mutations in the UNC45A gene

L. Faivre , Clothilde Esteve , L. Francescatto , P. L. Tan , A. Bourchany
European Journal of Human Genetics, 2019, 27 (1), pp.795-796
Journal articles hal-02461437v1
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Extreme halophilic archaea derive from two distinct methanogen Class II lineages

Monique Aouad , Najwa Taïb , Anne Oudart , Michel Lecocq , Manolo Gouy
Molecular Phylogenetics and Evolution, 2018, 127, pp.46-54. ⟨10.1016/j.ympev.2018.04.011⟩
Journal articles hal-01799910v1

PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae

L. Zucchini , C. Mercy , Ps. Garcia , C. Cluzel , V. Gueguen-Chaignon
Nature Microbiology, 2018, 3 (2), pp.197-209. ⟨10.1038/s41564-017-0069-3⟩
Journal articles hal-01887855v1
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A novel subfamily of bacterial AAT-fold basic amino acid decarboxylases and functional characterization of its first representative: Pseudomonas aeruginosa LdcA

Diego Carriel , Pierre Simon Garcia , Florence Castelli , Patricia Lamourette , François Fenaille
Genome Biology and Evolution, 2018, 10 (11), pp.3058-3075. ⟨10.1093/gbe/evy228⟩
Journal articles hal-01987296v1

Loss-of-Function Mutations in UNC45A Cause a Syndrome Associating Cholestasis, Diarrhea, Impaired Hearing, and Bone Fragility

Clothilde Esteve , Ludmila Francescatto , Perciliz Tan , Aurélie Bourchany , Cécile de Leusse
American Journal of Human Genetics, 2018, 102 (3), pp.364 - 374. ⟨10.1016/j.ajhg.2018.01.009⟩
Journal articles hal-01721495v1
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Obligate sugar oxidation in Mesotoga spp., phylum Thermotogae , in the presence of either elemental sulfur or hydrogenotrophic sulfate-reducers as electron acceptor

Khaled Fadhlaoui , Wagdi Ben Hania , Fabrice Armougom , Manon Joseph , Marie-Laure Fardeau
Environmental Microbiology, 2018, 20 (1), pp.281-292. ⟨10.1111/1462-2920.13995⟩
Journal articles hal-01976008v1

The CO dehydrogenase accessory protein CooT is a novel nickel-binding protein.

J. Timm , C. Brochier-Armanet , J. Pérard , B. Zambelli , S. Ollagnier de Choudens
Metallomics, 2017, 9 (5), pp.575-583. ⟨10.1039/c7mt00063d⟩
Journal articles hal-01655185v1

IsoSel: Protein Isoform Selector for phylogenetic reconstructions

H. Philippon , A. Souvane , Céline Brochier-Armanet , G. Perriere
PLoS ONE, 2017, 12, pp.e0174250. ⟨10.1371/journal.pone.0174250⟩
Journal articles hal-01943795v1

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

Panagiotis S Adam , Guillaume Borrel , Céline Brochier-Armanet , Simonetta Gribaldo
The International Society of Microbiologial Ecology Journal, 2017, 11 (11), pp.2407-2425. ⟨10.1038/ismej.2017.122⟩
Journal articles pasteur-02445405v1
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Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

L Karaki , P da Silva , F Rizk , C Chouabe , N Chantret
BMC Plant Biology, 2016, 16 (1), pp.63. ⟨10.1186/s12870-016-0745-0⟩
Journal articles hal-01287229v1

Evolutionary history of the mammalian synaptonemal complex

J. Fraune , Céline Brochier-Armanet , M. Alsheimer , J. N. Volff , K. Schucker
Chromosoma, 2016, 125, pp.355-60. ⟨10.1007/s00412-016-0583-8⟩
Journal articles hal-02012363v1

Cell division of Streptococcus pneumoniae: think positive!

P. S. Garcia , J. P. Simorre , Céline Brochier-Armanet , C. Grangeasse
Current Opinion in Microbiology, 2016, 34, pp.18-23. ⟨10.1016/j.mib.2016.07.014⟩
Journal articles hal-02012367v1

RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit , Simon Penel , Stéphane Delmotte , Carine Rey , Damien M de Vienne
Molecular Biology and Evolution, 2016, 33 (8), pp.2170--2172. ⟨10.1093/molbev/msw088⟩
Journal articles hal-01800061v1
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Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.

Luisa Cs Antunes , Daniel Poppleton , Andreas Klingl , Alexis Criscuolo , Bruno Dupuy
eLife, 2016, 5, pp.e14589. ⟨10.7554/eLife.14589.020⟩
Journal articles pasteur-01362343v1

Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya

Alexandre Duprey , William Nasser , Simon Leonard , Céline Brochier-Armanet , S. Reverchon
FEBS Journal, 2016, 283 (22), pp.4192-4207
Journal articles hal-01997031v1
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

Mathieu Groussin , Bastien Boussau , Gergely J Szollosi , Laura Eme , Manolo Gouy
Molecular Biology and Evolution, 2016, 33 (2), pp.305 - 310. ⟨10.1093/molbev/msv249⟩
Journal articles hal-01913926v1

Silencing of natural transformation by an RNA chaperone and a multitarget small RNA

Laetitia Attaiech , Aïda Boughammoura , Céline Brochier-Armanet , Omran Allatif , Flora Peillard-Fiorente
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (31), pp.8813-8818. ⟨10.1073/pnas.1601626113⟩
Journal articles hal-01911308v1
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The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together

J. B. Dacks , M. C. Field , R. Buick , L. Eme , Simonetta Gribaldo
Journal of Cell Science, 2016, 129 (20), pp.3695-3703. ⟨10.1242/jcs.178566⟩
Journal articles hal-02016401v1

Novel genomic island modifies DNA with 7-deazaguanine derivatives

J.J. Thiaville , S.M. Kellner , Y. Yuan , G. Hutinet , P.C. Thiaville
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113, pp.e1452-e1459. ⟨10.1073/pnas.1518570113⟩
Journal articles hal-02049900v1

Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

Stéphanie Borland , Anne Oudart , Claire Prigent-Combaret , Céline Brochier-Armanet , Florence Wisniewski-Dyé
BMC Genomics, 2015, 16, pp.833. ⟨10.1186/s12864-015-1962-x⟩
Journal articles hal-02044935v1

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

Kelle Freel , Martin Krueger , Julien Farasin , Céline Brochier-Armanet , Valérie Barbe
PLoS ONE, 2015, 10 (9), pp.0139011. ⟨10.1371/journal.pone.0139011⟩
Journal articles cea-01825879v1

An evolutionary link between capsular biogenesis and surface motility in bacteria

Rym Agrebi , Morgane Wartel , Céline Brochier-Armanet , Tam Mignot
Nature Reviews Microbiology, 2015, 13 (5), pp.318--326. ⟨10.1038/nrmicro3431⟩
Journal articles hal-01452071v1
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Evolution and Design Governing Signal Precision and Amplification in a Bacterial Chemosensory Pathway

Mathilde Guzzo , Rym Agrebi , Leon Espinosa , Gregory Baronian , Virginie Molle
PLoS Genetics, 2015, 11 (8), pp.e1005460. ⟨10.1371/journal.pgen.1005460⟩
Journal articles hal-01452074v1
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Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization

Daniel Vinella , Frédéric Fischer , Egor Vorontsov , Julien Gallaud , Christian Malosse
PLoS Pathogens, 2015, 11 (12), pp.e1005312. ⟨10.1371/journal.ppat.1005312⟩
Journal articles hal-01258641v1
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Draft genome sequence of Mesotoga strain PhosAC3, a mesophilic member of the bacterial order Thermotogales, isolated from a digestor treating phosphogypsum in Tunisia

Wajdi Ben Hania , Khaled Fadhlaoui , Céline Brochier-Armanet , Cecile Persillon , Anne Postec
Standards in Genomic Sciences, 2015, 10, ⟨10.1186/1944-3277-10-12⟩
Journal articles hal-01452069v1

Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life

C. Petitjean , P. Deschamps , P. Lopez-Garcia , D. Moreira , Céline Brochier-Armanet
Molecular Biology and Evolution, 2015, 32, pp.1242-54
Journal articles hal-02025628v1

Constitutive arsenite oxidase expression detected in arsenic-hypertolerant Pseudomonas xanthomarina S11

S. Koechler , F. Arsene-Ploetze , Céline Brochier-Armanet , F. Goulhen-Chollet , A. Heinrich-Salmeron
Research in Microbiology, 2015, 166, pp.205-14
Journal articles hal-02044782v1

The two-domain tree of life is linked to a new root for the Archaea

Kasie Raymann , Céline Brochier-Armanet , Simonetta Gribaldo
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112, pp.6670-6675. ⟨10.1073/pnas.1420858112⟩
Journal articles hal-02018983v1
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Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

H. Philippon , Céline Brochier-Armanet , G. Perriere
BMC Evolutionary Biology, 2015, 15, pp.226. ⟨10.1186/s12862-015-0498-7⟩
Journal articles hal-02025630v1

Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family

R. Zallot , Céline Brochier-Armanet , K. W. Gaston , F. Forouhar , P. A. Limbach
ACS Chemical Biology, 2014, 9 (8), pp.1812-1825. ⟨10.1021/cb500278k⟩
Journal articles hal-02045535v1

Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Hemalatha Golaconda Ramulu , Mathieu Groussin , Emmanuel Talla , Rémi Planel , Vincent Daubin
Molecular Phylogenetics and Evolution, 2014, 75, pp.103 - 117. ⟨10.1016/j.ympev.2014.02.013⟩
Journal articles hal-01913940v1

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Nadia Khelifi , Oulfat Amin Ali , Philippe Roche , Vincent Grossi , Céline Brochier-Armanet
The International Society of Microbiologial Ecology Journal, 2014, pp.18. ⟨10.1038/ismej.2014.58⟩
Journal articles hal-01165315v1
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Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

Kasie Raymann , Patrick Forterre , Céline Brochier-Armanet , Simonetta Gribaldo
Genome Biology and Evolution, 2014, 6 (1), pp.192-212. ⟨10.1093/gbe/evu004⟩
Journal articles hal-00957432v1

Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents

A. Amouric , Pierre-Pol Liebgott , M. Joseph , Céline Brochier-Armanet , J. Lorquin
International Journal of Systematic and Evolutionary Microbiology, 2014, 64 (Pt 1), pp.46 - 54. ⟨10.1099/ijs.0.049007-0⟩
Journal articles hal-01825480v1

Promiscuous Nickel Import in Human Pathogens: Structure, Thermodynamics, and Evolution of Extracytoplasmic Nickel-Binding Proteins

Hugo Lebrette , Céline Brochier-Armanet , Barbara Zambelli , Hilde de Reuse , Elise Borezée-Durant
Structure, 2014, 22 (10), pp.1421-1432. ⟨10.1016/j.str.2014.07.012⟩
Journal articles hal-01084825v1
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Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes

Nc. Rochette , Céline Brochier-Armanet , M. Gouy
Molecular Biology and Evolution, 2014, 31 (4), pp.832-45. ⟨10.1093/molbev/mst272⟩
Journal articles hal-02045522v1

Protein SYCP2 Is an Ancient Component of the Metazoan Synaptonemal Complex

J. Fraune , M. Alsheimer , J. Redolfi , Céline Brochier-Armanet , R. Benavente
Cytogenetic and genome research, 2014, 144, pp.299-305. ⟨10.1159/000381080⟩
Journal articles hal-02071527v1

Phylogenies of Central Element Proteins Reveal the Dynamic Evolutionary History of the Mammalian Synaptonemal Complex: Ancient and Recent Components

J. Fraune , Céline Brochier-Armanet , M. Alsheimer , R. Benavente
GENETICS, 2013, 195, pp.781--793. ⟨10.1534/genetics.113.156679⟩
Journal articles hal-02281550v1

Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer.

Wajdi Ben Hania , Anne Postec , Thomas Aüllo , Anthony Ranchou-Peyruse , Gaël Erauso
International Journal of Systematic and Evolutionary Microbiology, 2013, 63 (Pt 8), pp.3003-8. ⟨10.1099/ijs.0.047993-0⟩
Journal articles hal-00972251v1

Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota

L. Eme , Lj. Reigstad , A. Spang , A. Lanzen , T. Weinmaier
Research in Microbiology, 2013, 164, pp.425--38. ⟨10.1016/j.resmic.2013.02.006⟩
Journal articles hal-02281555v1

LUCA, ancêtre de tous les êtres vivants

Simonetta Gribaldo , Céline Brochier-Armanet
Les Dossiers de la Recherche, 2013, 2, pp.29--31
Journal articles hal-02281557v1
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold
Genome Biology and Evolution, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩
Journal articles hal-00972245v1

Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage

V. de Crécy-Lagard , F. Forouhar , Céline Brochier-Armanet , L. Tong , Jf. Hunt
Biology Direct, 2012, 7, pp.1--13. ⟨10.1186/1745-6150-7-32⟩
Journal articles hal-02296989v1

Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archea

C. Petitjean , D. Moreira , P. Lopez-Garcia , Céline Brochier-Armanet
BMC Evolutionary Biology, 2012, 12, pp.226. ⟨10.1186/1471-2148-12-226⟩
Journal articles hal-02282767v1

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Priya Narasingarao , Sheila Podell , Juan A Ugalde , Céline Brochier-Armanet , Joanne B Emerson
The International Society of Microbiologial Ecology Journal, 2012, 6 (1), pp.81-93. ⟨10.1038/ismej.2011.78⟩
Journal articles hal-00965716v1

Les défis de la systématique face au monde microbien

Céline Brochier-Armanet , Simonetta Gribaldo
incollection, 2012, 328, pp.49-52
Journal articles hal-00698394v1

Spotlight on the Thaumarchaeota

C. Brochier-Armanet , Simonetta Gribaldo , Patrick Forterre
The International Society of Microbiologial Ecology Journal, 2012, 6, pp.227-230. ⟨10.1038/ismej.2011.145⟩
Journal articles hal-00658492v1

Time for order in microbial systematics

Simonetta Gribaldo , Céline Brochier-Armanet
Trends in Microbiology, 2012, 20, pp.209-210. ⟨10.1016/j.tim.2012.02.006⟩
Journal articles hal-00697925v1

Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe-S carrier.

Béatrice Py , Catherine Gerez , Sandra Angelini , Rémy Planel , Daniel Vinella
Molecular Microbiology, 2012, 86 (1), pp.155-71. ⟨10.1111/j.1365-2958.2012.08181.x⟩
Journal articles hal-01054360v1
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On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.

Elie Desmond , Celine Brochier-Armanet , Patrick Forterre , Simonetta Gribaldo
Research in Microbiology, 2011, 162 (1), pp.53-70. ⟨10.1016/j.resmic.2010.10.004⟩
Journal articles hal-00658502v1

The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes

L. Eme , A. Trilles , D. Moreira , Céline Brochier-Armanet
BMC Evolutionary Biology, 2011, 11, pp.923-33. ⟨10.1186/1471-2148-11-265⟩
Journal articles hal-02299282v1

Unsuspected Diversity of Arsenite-Oxidizing Bacteria Revealed by a Widespread Distribution of the aoxB Gene in Prokaryotes

A. Heinrich-Salmeron , A. Cordi , Céline Brochier-Armanet , D. Halter , C. Pagnout
Applied and Environmental Microbiology, 2011, 77, pp.4685-92. ⟨10.1128/AEM.02884-10⟩
Journal articles hal-00697950v1

Archaea and the tree of life

Simonetta Gribaldo , Patrick Forterre , Celine Brochier-Armanet
Research in Microbiology, 2011, 162 (1), pp.1-4. ⟨10.1016/j.resmic.2010.11.007⟩
Journal articles hal-00596061v1

A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System

S. Coumes-Florens , Céline Brochier-Armanet , A. Guiseppi , F. Denizot , M. Foglino
PLoS ONE, 2011, 6, pp.e15951. ⟨10.1371/journal.pone.0015951⟩
Journal articles hal-02299257v1

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Céline Brochier-Armanet , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Francisco Rodríguez-Valera
The International Society of Microbiologial Ecology Journal, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩
Journal articles hal-00662567v1

Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria

J. Luciano , R. Agrebi , A.V. Le Gall , M. Wartel , F. Fiegna
PLoS Genetics, 2011, 7 (9), pp.1409-1418. ⟨10.1371/journal.pgen.1002268⟩
Journal articles hal-00698033v1
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Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis

Hana Trigui , Salma Masmoudi , Céline Brochier-Armanet , Aude Barani , Gérald Grégori
Extremophiles, 2011, 15, pp.347-358. ⟨10.1007/s00792-011-0364-5⟩
Journal articles hal-00598296v1

Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia

H. Trigui , Salma Masmoudi , Céline Brochier-Armanet , S. Maalej , S. Dukan
Int J Microbiol, 2011, --, pp.347-58
Journal articles hal-00698269v1

A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120

C. Boileau , L. Eme , Céline Brochier-Armanet , A. Janicki , C-C. Zhang
New Phytologist, 2011, 191, pp.1108-1118. ⟨10.1111/j.1469-8137.2011.03774.x⟩
Journal articles hal-02303173v1
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Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.

France Denoeud , Michaël Roussel , Benjamin Noel , Ivan Wawrzyniak , Corinne da Silva
Genome Biology, 2011, 12 (3), pp.R29. ⟨10.1186/gb-2011-12-3-r29⟩
Journal articles inserm-00617212v1

Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales

Wajdi Ben Hania , Ramzi Ghodbane , Anne Postec , Celine Brochier-Armanet , Moktar Hamdi
Systematic and Applied Microbiology, 2011, 34, pp.581-585. ⟨10.1016/j.syapm.2011.04.001⟩
Journal articles hal-00748961v1

The Assembly Mode of the Pseudopilus: a hallmark to distinguish a novel secretion system subtype

E. Durand , S. Alphonse , Céline Brochier-Armanet , G. Ball , Badreddine Douzi
Journal of Biological Chemistry, 2011, 286 (27), pp.24407-24416. ⟨10.1074/jbc.M111.234278⟩
Journal articles hal-02299276v1

Phylogeny and evolution of the Archaea: one hundred genomes later.

Celine Brochier-Armanet , Patrick Forterre , Simonetta Gribaldo
Current Opinion in Microbiology, 2011, epub ahead of print. ⟨10.1016/j.mib.2011.04.015⟩
Journal articles hal-00598326v1

An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales

C. Le Fourn , G. Brasseur , Céline Brochier-Armanet , L. Pieulle , A. Brioukhanov
Environmental Microbiology, 2011, 13, pp.2132-45. ⟨10.1111/j.1462-2920.2011.02439.x⟩
Journal articles hal-02299099v1

Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien , Anette Rasmussen , Simon Rose , Céline Brochier-Armanet , Clotilde Husson
RNA, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩
Journal articles hal-00580893v1

Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways

A. Amouric , Céline Brochier-Armanet , D. B. Johnson , V. Bonnefoy , K. B. Hallberg
Microbiology, 2011, 155, pp.111-122. ⟨10.1099/mic.0.044537-0⟩
Journal articles hal-02303158v1

Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien , Anette Rasmussen , Simon Rose , Céline Brochier-Armanet , Clotilde Husson
RNA, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩
Journal articles hal-00572515v1

Characteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3As(T) sp. nov.

D. Slyemi , D. Moinier , Céline Brochier-Armanet , V. Bonnefoy , D. B. Johnson
Archives of Microbiology, 2011, 193, pp.439-449. ⟨10.1007/s00203-011-0684-y⟩
Journal articles hal-02297428v1

The GTPase Function of YvcJ and Its Subcellular Relocalization Are Dependent on Growth Conditions in Bacillus subtilis

F. Pompeo , J. Luciano , Céline Brochier-Armanet , A. Galinier
Journal of Molecular Microbiology and Biotechnology, 2011, 20, pp.156-67
Journal articles hal-00698146v1

Survival of extremely and moderately halophilic isolates of Tunisian solar salterns after UV-B or oxidative stress

H. Trigui , Salma Masmoudi , Céline Brochier-Armanet , S. Maalej , S. Dukan
Canadian Journal of Microbiology, 2011, 57(11), pp.923-33
Journal articles hal-00698270v1

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

Simonetta Gribaldo , Anthony M. Poole , Vincent Daubin , Patrick Forterre , C. Brochier-Armanet
Nature Reviews Microbiology, 2010, 8 (10), pp.743-753. ⟨10.1038/nrmicro2426⟩
Journal articles hal-00539502v1

The Pseudomonas aeruginosa patatin-like protein PlpD is the archetype of a novel Type V secretion system

R. Salacha , F. Kovacic , Céline Brochier-Armanet , S. Wilhelm , J. Tommassen
Environmental Microbiology, 2010, 12 (6), pp.1498-512. ⟨10.1111/j.1462-2920.2010.02174.x⟩
Journal articles hal-00698204v1

Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota

A. Spang , R. Hatzenpichler , Céline Brochier-Armanet , T. Rattei , P. Tischler
Trends Microbiol, 2010, 18(8), pp.331-40
Journal articles hal-00698225v1

Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.

Valérie de Crécy-Lagard , Céline Brochier-Armanet , Jaunius Urbonavicius , Bernard Fernandez , Gabriela Phillips
Molecular Biology and Evolution, 2010, 27 (9), pp.2062-77. ⟨10.1093/molbev/msq096⟩
Journal articles hal-00534355v1

Concepts et méchodes en phylogénie moléculaire

G. Perrière , C. Brochier-Armanet
incollection, 2010, --, pp.63-65
Journal articles hal-00539266v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Journal articles hal-00463879v1

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

C.B. Walker , J.R. La Torre , M.G. Klotz , H. Urakawa , N. Pinel
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (19), pp.8818-23. ⟨10.1073/pnas.0913533107⟩
Journal articles hal-00698318v1

Happy together: genomic insights into the unique Nanoarchaeum/Ignicoccus association.

Patrick Forterre , Simonetta Gribaldo , Céline Brochier-Armanet
Journal of Biology, 2009, 8 (1), pp.7. ⟨10.1186/jbiol110⟩
Journal articles hal-00362871v1

Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers

D. Vinella , Céline Brochier-Armanet , L. Loiseau , E. Talla , F. Barras
PLoS Genetics, 2009, 5, pp.261-268
Journal articles hal-00698313v1

Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance

J. Oberto , N. Breuil , A. Hecker , F. Farina , Céline Brochier-Armanet
Nucleic Acids Research, 2009, 37, pp.5343-52
Journal articles hal-00698096v1

Comparison of alignment free string distances for complete genome phylogeny

F. Guyon , Céline Brochier-Armanet , A. Guénoche
Advances in Data Analysis and Classification, 2009, 3, pp.95-108
Journal articles hal-00697936v1
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Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.

Jacques Oberto , Norman Breuil , Arnaud Hecker , Francesca Farina , Céline Brochier-Armanet
Nucleic Acids Research, 2009, epub ahead of print. ⟨10.1093/nar/gkp557⟩
Journal articles hal-00404453v1

Phylogeny of prokaryotes: does it exist and why should we care?

Simonetta Gribaldo , Céline Brochier-Armanet
Research in Microbiology, 2009, 160, pp.513-21
Journal articles hal-00697932v1
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Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.

Jaunius Urbonavicius , Sylvie Auxilien , Hélène Walbott , Kalliopi Trachana , Béatrice Golinelli-Pimpaneau
Molecular Microbiology, 2008, 67 (2), pp.323-35. ⟨10.1111/j.1365-2958.2007.06047.x⟩
Journal articles hal-02287548v1

Giant viruses giant chimeras: The multiple evolutionary histories of Mimivirus genes

D. Moreira , Céline Brochier-Armanet
BMC Evolutionary Biology, 2008, 8, pp.1-7
Journal articles hal-00698068v1

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

Céline Brochier-Armanet , Bastien Boussau , Simonetta Gribaldo , Patrick Forterre
Nature Reviews Microbiology, 2008, 6 (3), pp.245-252. ⟨10.1038/nrmicro1852⟩
Journal articles hal-00256781v1

Metagenome Annotation Using a Distributed Grid of Undergraduate Students

P. Hingamp , Céline Brochier-Armanet , E. Talla , D. Gautheret , D. Thieffry
PLoS Biology, 2008, 6, pp.239-241
Journal articles hal-00697953v1

Les Archaea : évolution et diversité du troisième domaine du vivant

Simonetta Gribaldo , Patrick Forterre , Céline Brochier-Armanet
Bulletin - Société Française de Microbiologie, 2008, 23 (3), pp.137-145
Journal articles hal-00697926v1
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A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya.

Céline Brochier-Armanet , Simonetta Gribaldo , Patrick Forterre
Biol Direct, 2008, 3, pp.54. ⟨10.1186/1745-6150-3-54⟩
Journal articles hal-00353347v1

Acquisition of a bacterial RumA-type tRNA(uracil-54 C5)methyltransferase by Archaea through an ancient horizontal gene transfer

J. Urbonavicius , S. Auxilien , H. Walbott , K. Trachana , B. Golinelli-Pimpaneau
Molecular Microbiology, 2008, 67, pp.323-335
Journal articles hal-00698274v1

In vitro detection of the enzymatic activity of folate-dependent tRNA(U54 C5)methyltransferase

J. Urbonavicius , Céline Brochier-Armanet , S. Skouloubris , H. Myllykallio , H. Grosjean
Methods in Enzymology, 2007, 25, pp.103-19
Journal articles hal-00698275v1

Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1

N. Chomont , H. Hocini , G. Gresenguet , Céline Brochier-Armanet , H. Bouhlal
AIDS. Official journal of the international AIDS Society, 2007, 21, pp.153--162
Journal articles hal-01887880v1
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An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro.

Arnaud Hecker , Nicolas Leulliot , Danièle Gadelle , Marc Graille , Anthony Justome
Nucleic Acids Research, 2007, 35 (18), pp.6042-51. ⟨10.1093/nar/gkm554⟩
Journal articles hal-00195238v1

In vitro detection of the enzymatic activity of folate-dependent tRNA (Uracil-54,-C5)-methyltransferase: evolutionary implications.

Jaunius Urbonavicius , Céline Brochier-Armanet , Stéphane Skouloubris , Hannu Myllykallio , Henri Grosjean
Methods in Enzymology, 2007, 425, pp.103-19. ⟨10.1016/S0076-6879(07)25004-9⟩
Journal articles hal-00264052v1

Comparative RNomics and modomics in mollicutes: prediction of gene function and evolutionary implications

V. de Crécy-Lagard , C. Marck , Céline Brochier-Armanet , H. Grosjean
IUBMB Life, 2007, 59, pp.634-58
Journal articles hal-00698407v1
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Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure

Elie Desmond , Céline Brochier-Armanet , Simonetta Gribaldo
BMC Evolutionary Biology, 2007, 7, pp.53-70. ⟨10.1186/1471-2148-7-106⟩
Journal articles hal-00698404v1

The origin and evolution of Archaea: a state of the art

Simonetta Gribaldo , Céline Brochier-Armanet
Philos Trans R Soc Lond B Biol Sci, 2006, 361, pp.1007-22
Journal articles hal-00697930v1

[Luca: the last universal common ancestor]

Patrick Forterre , Simonetta Gribaldo , Céline Brochier
Médecine/Sciences, 2005, 21 (10), pp.860-5
Journal articles hal-00196820v1

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

P. Lopez-Garcia , Céline Brochier-Armanet , D. Moreira , F. Rodriguez-Valera
Environmental Microbiology, 2004, 6, pp.19-34
Journal articles hal-00698028v1

Archaeal phylogeny based on ribosomal proteins

O. Matte-Tailliez , Céline Brochier-Armanet , Patrick Forterre , H. Philippe
Mol Biol Evol, 2002, 19, pp.631-639
Journal articles hal-00698045v1

Eubacterial phylogeny based on translational apparatus proteins

Céline Brochier , Eric Bapteste , David Moreira , Hervé Philippe
Trends in Genetics, 2002, 18 (1), pp.1-5. ⟨10.1016/s0168-9525(01)02522-7⟩
Journal articles hal-02335701v1

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

Céline Brochier , Hervé Philippe , David Moreira
Trends in Genetics, 2000, 16 (12), pp.529-533. ⟨10.1016/s0168-9525(00)02142-9⟩
Journal articles hal-02335661v1

Phylogénies moléculaires et génomes

Céline Brochier-Armanet , H. Philippe
incollection, 2000, 206, pp.50-53
Journal articles hal-00698388v1

Nickel import in bacteria, structural study of extracytoplasmic nickel-binding proteins

Hugo Lebrette , Christine Cavazza , Céline Brochier-Armanet , Elise Borezée-Durant
16. International Conference on Biological Inorganic Chemistry (ICBIC), IMBG. Saint Ismier, FRA., Jul 2013, Grenoble, France. pp.1
Conference papers hal-01204369v1
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Article 5. L’émergence des eucaryotes : une mosaïque d’ADN

Dominique D. Joly , Celine Brochier-Armanet
101 secrets de l’ADN. CNRS Éditions, Paris, pp 39-41, pp.39-41, 2019
Book sections hal-02397696v1

Taxonomy and Phylogeny of Prokaryotes

Pierre Caumette , Céline Brochier-Armanet , Philippe Normand
Jean-Claude Bertrand; Pierre Caumette; Philippe Lebaron; Robert Matheron; Philippe Normand; Télesphore Sime-Ngando. Environmental Microbiology: Fundamentals and Applications, Springer Netherlands, pp.145-190, 2015, 978-94-017-9118-2. ⟨10.1007/978-94-017-9118-2_6⟩
Book sections hal-02477161v1

Pendant trois milliards d'années les micro-organismes sont les seuls habitants de la terre

J.C. Bertrand , Céline Brochier-Armanet , Manolo Gouy , F. Westall
Ecologie microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, pp.94-U259, 2011, 2-35311-022-3 9782353110223
Book sections hal-00698386v1

Taxonomie et phylogénie des procaryotes. Chapitre 6

Pierre Caumette , Céline Brochier-Armanet , Philippe Normand
Ecologie Microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, 1004 p., 2011, 2-35311-022-3 9782353110223
Book sections hal-02802279v1