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Céline Brochier-Armanet



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Deciphering evolutionary trajectories of lactate dehydrogenases provides new insights into allostery.

Adeline Robin , Céline Brochier-Armanet , Quentin Bertrand , Caroline Barette , Eric Girard
Molecular Biology and Evolution, 2023, msad223, ⟨10.1093/molbev/msad223⟩
Journal articles hal-04235286v1
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A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea

Monique Aouad , Jean-Pierre Flandrois , Frédéric Jauffrit , Manolo Gouy , Simonetta Gribaldo
BMC Ecology and Evolution, 2022, 22 (1), pp.1-12. ⟨10.1186/s12862-021-01952-0⟩
Journal articles hal-03514913v1
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Protein conformational space at the edge of allostery: turning a nonallosteric malate dehydrogenase into an “allosterized” enzyme using evolution-guided punctual mutations

Antonio Iorio , Céline Brochier-Armanet , Caroline Mas , Fabio Sterpone , Dominique Madern
Molecular Biology and Evolution, 2022, 39 (9), pp.msac186. ⟨10.1093/molbev/msac186⟩
Journal articles hal-03781769v1

The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study

Michel Lecocq , Mathieu Groussin , Manolo Gouy , Celine Brochier-Armanet
Molecular Biology and Evolution, 2021, 38 (5), pp.1761-1776. ⟨10.1093/molbev/msaa312⟩
Journal articles hal-03118165v1
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Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance

Jan Felix , Claire Siebert , Juila Novion Ducassou , Jérôme Nigou , Pierre Simon Garcia
Scientific Reports, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩
Journal articles hal-03118173v1
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A Comprehensive Evolutionary Scenario of Cell Division and Associated Processes in the Firmicutes

Pierre Garcia , Wandrille Duchemin , Jean-Pierre Flandrois , Simonetta Gribaldo , Christophe Grangeasse
Molecular Biology and Evolution, 2021, 38 (6), pp.2396-2412. ⟨10.1093/molbev/msab034⟩
Journal articles hal-03293358v1
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Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes

Djivan Prentout , Natasa Stajner , Andreja Cerenak , Theo Tricou , Celine Brochier-Armanet
New Phytologist, 2021, 231 (4), pp.1599-1611. ⟨10.1111/nph.17456⟩
Journal articles hal-03254304v1
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The TERB1-TERB2-MAJIN complex of mouse meiotic telomeres dates back to the common ancestor of metazoans

Irene da Cruz , Celine Brochier-Armanet , Ricardo Benavente
BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01612-9⟩
Journal articles hal-03118158v1

Evolutionary relationships between Archaea and eukaryotes

Simonetta Gribaldo , Celine Brochier-Armanet
Nature Ecology & Evolution, 2020, 4, pp.20-21. ⟨10.1038/s41559-019-1073-1⟩
Journal articles pasteur-02445585v1

Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum)

Nicole Hugouvieux‐cotte‐pattat , Celine Brochier-Armanet , Jean-Pierre Flandrois , Sylvie Reverchon
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (8), pp.4508-4514. ⟨10.1099/ijsem.0.004306⟩
Journal articles hal-03103453v1
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Hepatitis B virus preS2Δ38–55 variants: A newly identified risk factor for hepatocellular carcinoma

Damien Cohen , Sumantra Ghosh , Yusuke Shimakawa , Njie Ramou , Pierre Simon Garcia
JHEP Reports Innovation in Hepatology, 2020, 2 (5), pp.100144. ⟨10.1016/j.jhepr.2020.100144⟩
Journal articles pasteur-03697731v1

GeneSpy, a user-friendly and flexible genomic context visualizer

Pierre Simon Garcia , Frédéric Jauffrit , Christophe Grangeasse , Céline Brochier-Armanet
Bioinformatics, 2019, 35 (2), pp.329-331. ⟨10.1093/bioinformatics/bty459⟩
Journal articles hal-02388605v1
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The bacterial MrpORP is a novel Mrp/NBP35 protein involved in iron-sulfur biogenesis

Romain Pardoux , Anouchka Fiévet , Cíntia Carreira , Céline Brochier-Armanet , Odile Valette
Scientific Reports, 2019, 9 (1), pp.360-373. ⟨10.1038/s41598-018-37021-8⟩
Journal articles hal-02186929v1
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Structure, Function, and Evolution of the Pseudomonas aeruginosa Lysine Decarboxylase LdcA

Eaazhisai Kandiah , Diego Carriel , Pierre Simon Garcia , Jan Felix , Manuel Banzhaf
Journal articles hal-02345384v1
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Francisella tularensis: FupA mutation contributes tofluoroquinolone resistance by increasing vesicle secretion and biofilm formation

Claire Siebert , Helena Lindgren , Sabrina Ferré , Corinne Villers , Sandrine Boisset
Emerging microbes & infections, 2019, 8 (1), pp.808-822. ⟨10.1080/22221751.2019.1615848⟩
Journal articles hal-03019231v1
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Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation

Lorine Bethencourt , Hasna Boubakri , Najwa Taïb , Philippe Normand , J. Armengaud
Research in Microbiology, 2019, 170 (4-5), pp.202-213. ⟨10.1016/j.resmic.2019.04.002⟩
Journal articles hal-02309396v1
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The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity

Alexandre Duprey , Najwa Taïb , Simon Leonard , Tiffany Garin , Jean-Pierre Flandrois
Environmental Microbiology, 2019, 21 (8), pp.2809-2835. ⟨10.1111/1462-2920.14627⟩
Journal articles hal-02099020v1
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Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon

Jean-Pierre Flandrois , Céline Brochier-Armanet , Jérôme Briolay , Danis Abrouk , Guillaume P Schwob
Research in Microbiology, 2019, 170 (6-7), pp.280-287. ⟨10.1016/j.resmic.2019.06.005⟩
Journal articles hal-02327832v1

Description Osteo-Oto-Hepato-Enteric (O2HE) syndrome, a new recessive autosomal syndrome secondary to loss of function mutations in the UNC45A gene

L. Faivre , Clothilde Esteve , L. Francescatto , P. L. Tan , A. Bourchany
European Journal of Human Genetics, 2019, 27 (1), pp.795-796
Journal articles hal-02461437v1
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Evolutionary placement of Methanonatronarchaeia

Monique Aouad , Guillaume Borrel , Céline Brochier-Armanet , Simonetta Gribaldo
Nature Microbiology, 2019, ⟨10.1038/s41564-019-0359-z⟩
Journal articles pasteur-02059654v1

PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae

L. Zucchini , C. Mercy , Ps. Garcia , C. Cluzel , V. Gueguen-Chaignon
Nature Microbiology, 2018, 3 (2), pp.197-209. ⟨10.1038/s41564-017-0069-3⟩
Journal articles hal-01887855v1
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Obligate sugar oxidation in Mesotoga spp., phylum Thermotogae , in the presence of either elemental sulfur or hydrogenotrophic sulfate-reducers as electron acceptor

Khaled Fadhlaoui , Wagdi Ben Hania , Fabrice Armougom , Manon Joseph , Marie-Laure Fardeau
Environmental Microbiology, 2018, 20 (1), pp.281-292. ⟨10.1111/1462-2920.13995⟩
Journal articles hal-01976008v1

Loss-of-Function Mutations in UNC45A Cause a Syndrome Associating Cholestasis, Diarrhea, Impaired Hearing, and Bone Fragility

Clothilde Esteve , Ludmila Francescatto , Perciliz Tan , Aurélie Bourchany , Cécile de Leusse
American Journal of Human Genetics, 2018, 102 (3), pp.364 - 374. ⟨10.1016/j.ajhg.2018.01.009⟩
Journal articles hal-01721495v1
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A novel subfamily of bacterial AAT-fold basic amino acid decarboxylases and functional characterization of its first representative: Pseudomonas aeruginosa LdcA

Diego Carriel , Pierre Simon Garcia , Florence Castelli , Patricia Lamourette , François Fenaille
Genome Biology and Evolution, 2018, 10 (11), pp.3058-3075. ⟨10.1093/gbe/evy228⟩
Journal articles hal-01987296v1
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Extreme halophilic archaea derive from two distinct methanogen Class II lineages

Monique Aouad , Najwa Taïb , Anne Oudart , Michel Lecocq , Manolo Gouy
Molecular Phylogenetics and Evolution, 2018, 127, pp.46-54. ⟨10.1016/j.ympev.2018.04.011⟩
Journal articles hal-01799910v1

The CO dehydrogenase accessory protein CooT is a novel nickel-binding protein.

J. Timm , C. Brochier-Armanet , J. Pérard , B. Zambelli , S. Ollagnier de Choudens
Metallomics, 2017, 9 (5), pp.575-583. ⟨10.1039/c7mt00063d⟩
Journal articles hal-01655185v1

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

Panagiotis S Adam , Guillaume Borrel , Céline Brochier-Armanet , Simonetta Gribaldo
ISME Journal, 2017, 11 (11), pp.2407-2425. ⟨10.1038/ismej.2017.122⟩
Journal articles pasteur-02445405v1

IsoSel: Protein Isoform Selector for phylogenetic reconstructions

H. Philippon , A. Souvane , Céline Brochier-Armanet , G. Perriere
PLoS ONE, 2017, 12, pp.e0174250. ⟨10.1371/journal.pone.0174250⟩
Journal articles hal-01943795v1
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Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

L Karaki , P da Silva , F Rizk , C Chouabe , N Chantret
BMC Plant Biology, 2016, 16 (1), pp.63. ⟨10.1186/s12870-016-0745-0⟩
Journal articles hal-01287229v1

Evolutionary history of the mammalian synaptonemal complex

J. Fraune , Céline Brochier-Armanet , M. Alsheimer , J. N. Volff , K. Schucker
Chromosoma, 2016, 125, pp.355-60. ⟨10.1007/s00412-016-0583-8⟩
Journal articles hal-02012363v1

Cell division of Streptococcus pneumoniae: think positive!

P. S. Garcia , J. P. Simorre , Céline Brochier-Armanet , C. Grangeasse
Current Opinion in Microbiology, 2016, 34, pp.18-23. ⟨10.1016/j.mib.2016.07.014⟩
Journal articles hal-02012367v1

RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit , Simon Penel , Stéphane Delmotte , Carine Rey , Damien M de Vienne
Molecular Biology and Evolution, 2016, 33 (8), pp.2170--2172. ⟨10.1093/molbev/msw088⟩
Journal articles hal-01800061v1
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Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.

Luisa Cs Antunes , Daniel Poppleton , Andreas Klingl , Alexis Criscuolo , Bruno Dupuy
eLife, 2016, 5, pp.e14589. ⟨10.7554/eLife.14589.020⟩
Journal articles pasteur-01362343v1

Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya

Alexandre Duprey , William Nasser , Simon Leonard , Céline Brochier-Armanet , S. Reverchon
FEBS Journal, 2016, 283 (22), pp.4192-4207
Journal articles hal-01997031v1

Silencing of natural transformation by an RNA chaperone and a multitarget small RNA

Laetitia Attaiech , Aïda Boughammoura , Céline Brochier-Armanet , Omran Allatif , Flora Peillard-Fiorente
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (31), pp.8813-8818. ⟨10.1073/pnas.1601626113⟩
Journal articles hal-01911308v1
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

Mathieu Groussin , Bastien Boussau , Gergely J Szollosi , Laura Eme , Manolo Gouy
Molecular Biology and Evolution, 2016, 33 (2), pp.305 - 310. ⟨10.1093/molbev/msv249⟩
Journal articles hal-01913926v1

Novel genomic island modifies DNA with 7-deazaguanine derivatives

J.J. Thiaville , S.M. Kellner , Y. Yuan , G. Hutinet , P.C. Thiaville
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113, pp.e1452-e1459. ⟨10.1073/pnas.1518570113⟩
Journal articles hal-02049900v1
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The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together

J. B. Dacks , M. C. Field , R. Buick , L. Eme , Simonetta Gribaldo
Journal of Cell Science, 2016, 129 (20), pp.3695-3703. ⟨10.1242/jcs.178566⟩
Journal articles hal-02016401v1

Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

Stéphanie Borland , Anne Oudart , Claire Prigent-Combaret , Céline Brochier-Armanet , Florence Wisniewski-Dyé
BMC Genomics, 2015, 16, pp.833. ⟨10.1186/s12864-015-1962-x⟩
Journal articles hal-02044935v1
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Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization

Daniel Vinella , Frédéric Fischer , Egor Vorontsov , Julien Gallaud , Christian Malosse
PLoS Pathogens, 2015, 11 (12), pp.e1005312. ⟨10.1371/journal.ppat.1005312⟩
Journal articles hal-01258641v1

An evolutionary link between capsular biogenesis and surface motility in bacteria

Rym Agrebi , Morgane Wartel , Céline Brochier-Armanet , Tam Mignot
Nature Reviews Microbiology, 2015, 13 (5), pp.318--326. ⟨10.1038/nrmicro3431⟩
Journal articles hal-01452071v1

Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

H. Philippon , Céline Brochier-Armanet , G. Perriere
BMC Evolutionary Biology, 2015, 15, pp.226. ⟨10.1186/s12862-015-0498-7⟩
Journal articles hal-02025630v1
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Evolution and Design Governing Signal Precision and Amplification in a Bacterial Chemosensory Pathway

Mathilde Guzzo , Rym Agrebi , Leon Espinosa , Gregory Baronian , Virginie Molle
PLoS Genetics, 2015, 11 (8), pp.e1005460. ⟨10.1371/journal.pgen.1005460⟩
Journal articles hal-01452074v1
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Draft genome sequence of Mesotoga strain PhosAC3, a mesophilic member of the bacterial order Thermotogales, isolated from a digestor treating phosphogypsum in Tunisia

Wajdi Ben Hania , Khaled Fadhlaoui , Céline Brochier-Armanet , Cecile Persillon , Anne Postec
Standards in Genomic Sciences, 2015, 10, ⟨10.1186/1944-3277-10-12⟩
Journal articles hal-01452069v1

The two-domain tree of life is linked to a new root for the Archaea

Kasie Raymann , Céline Brochier-Armanet , Simonetta Gribaldo
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112, pp.6670-6675. ⟨10.1073/pnas.1420858112⟩
Journal articles hal-02018983v1

Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life

C. Petitjean , P. Deschamps , P. Lopez-Garcia , D. Moreira , Céline Brochier-Armanet
Molecular Biology and Evolution, 2015, 32, pp.1242-54
Journal articles hal-02025628v1

Constitutive arsenite oxidase expression detected in arsenic-hypertolerant Pseudomonas xanthomarina S11

S. Koechler , F. Arsene-Ploetze , Céline Brochier-Armanet , F. Goulhen-Chollet , A. Heinrich-Salmeron
Research in Microbiology, 2015, 166, pp.205-14
Journal articles hal-02044782v1

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

Kelle Freel , Martin Krueger , Julien Farasin , Céline Brochier-Armanet , Valérie Barbe
PLoS ONE, 2015, 10 (9), pp.0139011. ⟨10.1371/journal.pone.0139011⟩
Journal articles cea-01825879v1

Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family

R. Zallot , Céline Brochier-Armanet , K. W. Gaston , F. Forouhar , P. A. Limbach
ACS Chemical Biology, 2014, 9 (8), pp.1812-1825. ⟨10.1021/cb500278k⟩
Journal articles hal-02045535v1

Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Hemalatha Golaconda Ramulu , Mathieu Groussin , Emmanuel Talla , Rémi Planel , Vincent Daubin
Molecular Phylogenetics and Evolution, 2014, 75, pp.103 - 117. ⟨10.1016/j.ympev.2014.02.013⟩
Journal articles hal-01913940v1

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Nadia Khelifi , Oulfat Amin Ali , Philippe Roche , Vincent Grossi , Céline Brochier-Armanet
ISME Journal, 2014, pp.18. ⟨10.1038/ismej.2014.58⟩
Journal articles hal-01165315v1
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Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

Kasie Raymann , Patrick Forterre , Céline Brochier-Armanet , Simonetta Gribaldo
Genome Biology and Evolution, 2014, 6 (1), pp.192-212. ⟨10.1093/gbe/evu004⟩
Journal articles hal-00957432v1

Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents

A. Amouric , Pierre-Pol Liebgott , M. Joseph , Céline Brochier-Armanet , J. Lorquin
International Journal of Systematic and Evolutionary Microbiology, 2014, 64 (Pt 1), pp.46 - 54. ⟨10.1099/ijs.0.049007-0⟩
Journal articles hal-01825480v1
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Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes

Nc. Rochette , Céline Brochier-Armanet , M. Gouy
Molecular Biology and Evolution, 2014, 31 (4), pp.832-45. ⟨10.1093/molbev/mst272⟩
Journal articles hal-02045522v1

Protein SYCP2 Is an Ancient Component of the Metazoan Synaptonemal Complex

J. Fraune , M. Alsheimer , J. Redolfi , Céline Brochier-Armanet , R. Benavente
Cytogenetic and genome research, 2014, 144, pp.299-305. ⟨10.1159/000381080⟩
Journal articles hal-02071527v1

Promiscuous Nickel Import in Human Pathogens: Structure, Thermodynamics, and Evolution of Extracytoplasmic Nickel-Binding Proteins

Hugo Lebrette , Céline Brochier-Armanet , Barbara Zambelli , Hilde de Reuse , Elise Borezée-Durant
Structure, 2014, 22 (10), pp.1421-1432. ⟨10.1016/j.str.2014.07.012⟩
Journal articles hal-01084825v1

Phylogenies of Central Element Proteins Reveal the Dynamic Evolutionary History of the Mammalian Synaptonemal Complex: Ancient and Recent Components

J. Fraune , Céline Brochier-Armanet , M. Alsheimer , R. Benavente
GENETICS, 2013, 195, pp.781--793. ⟨10.1534/genetics.113.156679⟩
Journal articles hal-02281550v1

Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota

L. Eme , Lj. Reigstad , A. Spang , A. Lanzen , T. Weinmaier
Research in Microbiology, 2013, 164, pp.425--38. ⟨10.1016/j.resmic.2013.02.006⟩
Journal articles hal-02281555v1

Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer.

Wajdi Ben Hania , Anne Postec , Thomas Aüllo , Anthony Ranchou-Peyruse , Gaël Erauso
International Journal of Systematic and Evolutionary Microbiology, 2013, 63 (Pt 8), pp.3003-8. ⟨10.1099/ijs.0.047993-0⟩
Journal articles hal-00972251v1
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold
Genome Biol Evol, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩
Journal articles hal-00972245v1

LUCA, ancêtre de tous les êtres vivants

Simonetta Gribaldo , Céline Brochier-Armanet
Les Dossiers de la Recherche, 2013, 2, pp.29--31
Journal articles hal-02281557v1

Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage

V. de Crécy-Lagard , F. Forouhar , Céline Brochier-Armanet , L. Tong , Jf. Hunt
Biology Direct, 2012, 7, pp.1--13. ⟨10.1186/1745-6150-7-32⟩
Journal articles hal-02296989v1

Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archea

C. Petitjean , D. Moreira , P. Lopez-Garcia , Céline Brochier-Armanet
BMC Evolutionary Biology, 2012, 12, pp.226. ⟨10.1186/1471-2148-12-226⟩
Journal articles hal-02282767v1

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Priya Narasingarao , Sheila Podell , Juan A Ugalde , Céline Brochier-Armanet , Joanne B Emerson
ISME Journal, 2012, 6 (1), pp.81-93. ⟨10.1038/ismej.2011.78⟩
Journal articles hal-00965716v1

Les défis de la systématique face au monde microbien

Céline Brochier-Armanet , Simonetta Gribaldo
incollection, 2012, 328, pp.49-52
Journal articles hal-00698394v1

Spotlight on the Thaumarchaeota

C. Brochier-Armanet , Simonetta Gribaldo , Patrick Forterre
ISME Journal, 2012, 6, pp.227-230. ⟨10.1038/ismej.2011.145⟩
Journal articles hal-00658492v1

Time for order in microbial systematics

Simonetta Gribaldo , Céline Brochier-Armanet
Trends in Microbiology, 2012, 20, pp.209-210. ⟨10.1016/j.tim.2012.02.006⟩
Journal articles hal-00697925v1

Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe-S carrier.

Béatrice Py , Catherine Gerez , Sandra Angelini , Rémy Planel , Daniel Vinella
Molecular Microbiology, 2012, 86 (1), pp.155-71. ⟨10.1111/j.1365-2958.2012.08181.x⟩
Journal articles hal-01054360v1
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On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.

Elie Desmond , Celine Brochier-Armanet , Patrick Forterre , Simonetta Gribaldo
Research in Microbiology, 2011, 162 (1), pp.53-70. ⟨10.1016/j.resmic.2010.10.004⟩
Journal articles hal-00658502v1

The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes

L. Eme , A. Trilles , D. Moreira , Céline Brochier-Armanet
BMC Evolutionary Biology, 2011, 11, pp.923-33. ⟨10.1186/1471-2148-11-265⟩
Journal articles hal-02299282v1

Unsuspected Diversity of Arsenite-Oxidizing Bacteria Revealed by a Widespread Distribution of the aoxB Gene in Prokaryotes

A. Heinrich-Salmeron , A. Cordi , Céline Brochier-Armanet , D. Halter , C. Pagnout
Applied and Environmental Microbiology, 2011, 77, pp.4685-92. ⟨10.1128/AEM.02884-10⟩
Journal articles hal-00697950v1

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Céline Brochier-Armanet , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Francisco Rodríguez-Valera
ISME Journal, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩
Journal articles hal-00662567v1

A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System

S. Coumes-Florens , Céline Brochier-Armanet , A. Guiseppi , F. Denizot , M. Foglino
PLoS ONE, 2011, 6, pp.e15951. ⟨10.1371/journal.pone.0015951⟩
Journal articles hal-02299257v1

Archaea and the tree of life

Simonetta Gribaldo , Patrick Forterre , Celine Brochier-Armanet
Research in Microbiology, 2011, 162 (1), pp.1-4. ⟨10.1016/j.resmic.2010.11.007⟩
Journal articles hal-00596061v1

A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120

C. Boileau , L. Eme , Céline Brochier-Armanet , A. Janicki , C-C. Zhang
New Phytologist, 2011, 191, pp.1108-1118. ⟨10.1111/j.1469-8137.2011.03774.x⟩
Journal articles hal-02303173v1
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Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.

France Denoeud , Michaël Roussel , Benjamin Noel , Ivan Wawrzyniak , Corinne da Silva
Genome Biology, 2011, 12 (3), pp.R29. ⟨10.1186/gb-2011-12-3-r29⟩
Journal articles inserm-00617212v1

Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales

Wajdi Ben Hania , Ramzi Ghodbane , Anne Postec , Celine Brochier-Armanet , Moktar Hamdi
Systematic and Applied Microbiology, 2011, 34, pp.581-585. ⟨10.1016/j.syapm.2011.04.001⟩
Journal articles hal-00748961v1

The Assembly Mode of the Pseudopilus: a hallmark to distinguish a novel secretion system subtype

E. Durand , S. Alphonse , Céline Brochier-Armanet , G. Ball , Badreddine Douzi
Journal of Biological Chemistry, 2011, 286 (27), pp.24407-24416. ⟨10.1074/jbc.M111.234278⟩
Journal articles hal-02299276v1

Phylogeny and evolution of the Archaea: one hundred genomes later.

Celine Brochier-Armanet , Patrick Forterre , Simonetta Gribaldo
Current Opinion in Microbiology, 2011, epub ahead of print. ⟨10.1016/j.mib.2011.04.015⟩
Journal articles hal-00598326v1

An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales

C. Le Fourn , G. Brasseur , Céline Brochier-Armanet , L. Pieulle , A. Brioukhanov
Environmental Microbiology, 2011, 13, pp.2132-45. ⟨10.1111/j.1462-2920.2011.02439.x⟩
Journal articles hal-02299099v1

Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien , Anette Rasmussen , Simon Rose , Céline Brochier-Armanet , Clotilde Husson
RNA, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩
Journal articles hal-00580893v1

Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien , Anette Rasmussen , Simon Rose , Céline Brochier-Armanet , Clotilde Husson
RNA, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩
Journal articles hal-00572515v1

Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways

A. Amouric , Céline Brochier-Armanet , D. B. Johnson , V. Bonnefoy , K. B. Hallberg
Microbiology, 2011, 155, pp.111-122. ⟨10.1099/mic.0.044537-0⟩
Journal articles hal-02303158v1

Characteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3As(T) sp. nov.

D. Slyemi , D. Moinier , Céline Brochier-Armanet , V. Bonnefoy , D. B. Johnson
Archives of Microbiology, 2011, 193, pp.439-449. ⟨10.1007/s00203-011-0684-y⟩
Journal articles hal-02297428v1

The GTPase Function of YvcJ and Its Subcellular Relocalization Are Dependent on Growth Conditions in Bacillus subtilis

F. Pompeo , J. Luciano , Céline Brochier-Armanet , A. Galinier
Journal of Molecular Microbiology and Biotechnology, 2011, 20, pp.156-67
Journal articles hal-00698146v1

Survival of extremely and moderately halophilic isolates of Tunisian solar salterns after UV-B or oxidative stress

H. Trigui , Salma Masmoudi , Céline Brochier-Armanet , S. Maalej , S. Dukan
Canadian Journal of Microbiology, 2011, 57(11), pp.923-33
Journal articles hal-00698270v1

Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia

H. Trigui , Salma Masmoudi , Céline Brochier-Armanet , S. Maalej , S. Dukan
Int J Microbiol, 2011, --, pp.347-58
Journal articles hal-00698269v1

Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria

J. Luciano , R. Agrebi , A.V. Le Gall , M. Wartel , F. Fiegna
PLoS Genetics, 2011, 7 (9), pp.1409-1418. ⟨10.1371/journal.pgen.1002268⟩
Journal articles hal-00698033v1
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Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis

Hana Trigui , Salma Masmoudi , Céline Brochier-Armanet , Aude Barani , Gérald Grégori
Extremophiles, 2011, 15, pp.347-358. ⟨10.1007/s00792-011-0364-5⟩
Journal articles hal-00598296v1

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

Simonetta Gribaldo , Anthony M. Poole , Vincent Daubin , Patrick Forterre , C. Brochier-Armanet
Nature Reviews Microbiology, 2010, 8 (10), pp.743-753. ⟨10.1038/nrmicro2426⟩
Journal articles hal-00539502v1

The Pseudomonas aeruginosa patatin-like protein PlpD is the archetype of a novel Type V secretion system

R. Salacha , F. Kovacic , Céline Brochier-Armanet , S. Wilhelm , J. Tommassen
Environmental Microbiology, 2010, 12 (6), pp.1498-512. ⟨10.1111/j.1462-2920.2010.02174.x⟩
Journal articles hal-00698204v1

Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota

A. Spang , R. Hatzenpichler , Céline Brochier-Armanet , T. Rattei , P. Tischler
Trends Microbiol, 2010, 18(8), pp.331-40
Journal articles hal-00698225v1

Concepts et méchodes en phylogénie moléculaire

G. Perrière , C. Brochier-Armanet
incollection, 2010, --, pp.63-65
Journal articles hal-00539266v1

Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.

Valérie de Crécy-Lagard , Céline Brochier-Armanet , Jaunius Urbonavicius , Bernard Fernandez , Gabriela Phillips
Molecular Biology and Evolution, 2010, 27 (9), pp.2062-77. ⟨10.1093/molbev/msq096⟩
Journal articles hal-00534355v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Journal articles hal-00463879v1

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

C.B. Walker , J.R. La Torre , M.G. Klotz , H. Urakawa , N. Pinel
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (19), pp.8818-23. ⟨10.1073/pnas.0913533107⟩
Journal articles hal-00698318v1

Happy together: genomic insights into the unique Nanoarchaeum/Ignicoccus association.

Patrick Forterre , Simonetta Gribaldo , Céline Brochier-Armanet
Journal of Biology, 2009, 8 (1), pp.7. ⟨10.1186/jbiol110⟩
Journal articles hal-00362871v1

Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance

J. Oberto , N. Breuil , A. Hecker , F. Farina , Céline Brochier-Armanet
Nucleic Acids Research, 2009, 37, pp.5343-52
Journal articles hal-00698096v1

Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers

D. Vinella , Céline Brochier-Armanet , L. Loiseau , E. Talla , F. Barras
PLoS Genetics, 2009, 5, pp.261-268
Journal articles hal-00698313v1
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Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.

Jacques Oberto , Norman Breuil , Arnaud Hecker , Francesca Farina , Céline Brochier-Armanet
Nucleic Acids Research, 2009, epub ahead of print. ⟨10.1093/nar/gkp557⟩
Journal articles hal-00404453v1

Phylogeny of prokaryotes: does it exist and why should we care?

Simonetta Gribaldo , Céline Brochier-Armanet
Research in Microbiology, 2009, 160, pp.513-21
Journal articles hal-00697932v1

Comparison of alignment free string distances for complete genome phylogeny

F. Guyon , Céline Brochier-Armanet , A. Guénoche
Advances in Data Analysis and Classification, 2009, 3, pp.95-108
Journal articles hal-00697936v1

Giant viruses giant chimeras: The multiple evolutionary histories of Mimivirus genes

D. Moreira , Céline Brochier-Armanet
BMC Evolutionary Biology, 2008, 8, pp.1-7
Journal articles hal-00698068v1
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Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.

Jaunius Urbonavicius , Sylvie Auxilien , Hélène Walbott , Kalliopi Trachana , Béatrice Golinelli-Pimpaneau
Molecular Microbiology, 2008, 67 (2), pp.323-35. ⟨10.1111/j.1365-2958.2007.06047.x⟩
Journal articles hal-02287548v1

Les Archaea : évolution et diversité du troisième domaine du vivant

Simonetta Gribaldo , Patrick Forterre , Céline Brochier-Armanet
Bulletin - Société Française de Microbiologie, 2008, 23 (3), pp.137-145
Journal articles hal-00697926v1

Metagenome Annotation Using a Distributed Grid of Undergraduate Students

P. Hingamp , Céline Brochier-Armanet , E. Talla , D. Gautheret , D. Thieffry
PLoS Biology, 2008, 6, pp.239-241
Journal articles hal-00697953v1
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A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya.

Céline Brochier-Armanet , Simonetta Gribaldo , Patrick Forterre
Biol Direct, 2008, 3, pp.54. ⟨10.1186/1745-6150-3-54⟩
Journal articles hal-00353347v1

Acquisition of a bacterial RumA-type tRNA(uracil-54 C5)methyltransferase by Archaea through an ancient horizontal gene transfer

J. Urbonavicius , S. Auxilien , H. Walbott , K. Trachana , B. Golinelli-Pimpaneau
Molecular Microbiology, 2008, 67, pp.323-335
Journal articles hal-00698274v1

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

Céline Brochier-Armanet , Bastien Boussau , Simonetta Gribaldo , Patrick Forterre
Nature Reviews Microbiology, 2008, 6 (3), pp.245-252. ⟨10.1038/nrmicro1852⟩
Journal articles hal-00256781v1

In vitro detection of the enzymatic activity of folate-dependent tRNA(U54 C5)methyltransferase

J. Urbonavicius , Céline Brochier-Armanet , S. Skouloubris , H. Myllykallio , H. Grosjean
Methods in Enzymology, 2007, 25, pp.103-19
Journal articles hal-00698275v1

Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1

N. Chomont , H. Hocini , G. Gresenguet , Céline Brochier-Armanet , H. Bouhlal
AIDS. Official journal of the international AIDS Society, 2007, 21, pp.153--162
Journal articles hal-01887880v1

Comparative RNomics and modomics in mollicutes: prediction of gene function and evolutionary implications

V. de Crécy-Lagard , C. Marck , Céline Brochier-Armanet , H. Grosjean
IUBMB Life, 2007, 59, pp.634-58
Journal articles hal-00698407v1

In vitro detection of the enzymatic activity of folate-dependent tRNA (Uracil-54,-C5)-methyltransferase: evolutionary implications.

Jaunius Urbonavicius , Céline Brochier-Armanet , Stéphane Skouloubris , Hannu Myllykallio , Henri Grosjean
Methods in Enzymology, 2007, 425, pp.103-19. ⟨10.1016/S0076-6879(07)25004-9⟩
Journal articles hal-00264052v1
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An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro.

Arnaud Hecker , Nicolas Leulliot , Danièle Gadelle , Marc Graille , Anthony Justome
Nucleic Acids Research, 2007, 35 (18), pp.6042-51. ⟨10.1093/nar/gkm554⟩
Journal articles hal-00195238v1
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Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure

Elie Desmond , Céline Brochier-Armanet , Simonetta Gribaldo
BMC Evolutionary Biology, 2007, 7, pp.53-70. ⟨10.1186/1471-2148-7-106⟩
Journal articles hal-00698404v1

The origin and evolution of Archaea: a state of the art

Simonetta Gribaldo , Céline Brochier-Armanet
Philos Trans R Soc Lond B Biol Sci, 2006, 361, pp.1007-22
Journal articles hal-00697930v1

[Luca: the last universal common ancestor]

Patrick Forterre , Simonetta Gribaldo , Céline Brochier
Médecine/Sciences, 2005, 21 (10), pp.860-5
Journal articles hal-00196820v1

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

P. Lopez-Garcia , Céline Brochier-Armanet , D. Moreira , F. Rodriguez-Valera
Environmental Microbiology, 2004, 6, pp.19-34
Journal articles hal-00698028v1

Archaeal phylogeny based on ribosomal proteins

O. Matte-Tailliez , Céline Brochier-Armanet , Patrick Forterre , H. Philippe
Mol Biol Evol, 2002, 19, pp.631-639
Journal articles hal-00698045v1

Eubacterial phylogeny based on translational apparatus proteins

Céline Brochier , Eric Bapteste , David Moreira , Hervé Philippe
Trends in Genetics, 2002, 18 (1), pp.1-5. ⟨10.1016/s0168-9525(01)02522-7⟩
Journal articles hal-02335701v1

Phylogénies moléculaires et génomes

Céline Brochier-Armanet , H. Philippe
incollection, 2000, 206, pp.50-53
Journal articles hal-00698388v1

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

Céline Brochier , Hervé Philippe , David Moreira
Trends in Genetics, 2000, 16 (12), pp.529-533. ⟨10.1016/s0168-9525(00)02142-9⟩
Journal articles hal-02335661v1

Nickel import in bacteria, structural study of extracytoplasmic nickel-binding proteins

Hugo Lebrette , Christine Cavazza , Céline Brochier-Armanet , Elise Borezée-Durant
16. International Conference on Biological Inorganic Chemistry (ICBIC), IMBG. Saint Ismier, FRA., Jul 2013, Grenoble, France. pp.1
Conference papers hal-01204369v1
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Article 5. L’émergence des eucaryotes : une mosaïque d’ADN

Dominique D. Joly , Celine Brochier-Armanet
101 secrets de l’ADN. CNRS Éditions, Paris, pp 39-41, pp.39-41, 2019
Book sections hal-02397696v1

Taxonomy and Phylogeny of Prokaryotes

Pierre Caumette , Céline Brochier-Armanet , Philippe Normand
Jean-Claude Bertrand; Pierre Caumette; Philippe Lebaron; Robert Matheron; Philippe Normand; Télesphore Sime-Ngando. Environmental Microbiology: Fundamentals and Applications, Springer Netherlands, pp.145-190, 2015, 978-94-017-9118-2. ⟨10.1007/978-94-017-9118-2_6⟩
Book sections hal-02477161v1

Pendant trois milliards d'années les micro-organismes sont les seuls habitants de la terre

J.C. Bertrand , Céline Brochier-Armanet , Manolo Gouy , F. Westall
Ecologie microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, pp.94-U259, 2011, 2-35311-022-3 9782353110223
Book sections hal-00698386v1

Taxonomie et phylogénie des procaryotes. Chapitre 6

Pierre Caumette , Céline Brochier-Armanet , Philippe Normand
Ecologie Microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, 1004 p., 2011, 2-35311-022-3 9782353110223
Book sections hal-02802279v1