|
Unravelling single-cell DNA replication timing dynamics using machine learning reveals heterogeneity in cancer progression
Joseph M Josephides
,
Chun-Long Chen
Article dans une revue
hal-05020639
v1
|
|
Editorial: Epigenetic regulation of genome integrity and its implications in human diseases
Zhiming Li
,
Xiao Chen
,
Chun-Long Chen
Article dans une revue
hal-05020622
v1
|
|
DAXX promotes centromeric stability independently of ATRX by preventing the accumulation of R-loop-induced DNA double-stranded breaks
Lia M Pinto
,
Alexandros Pailas
,
Max Bondarchenko
,
Abhishek Bharadwaj Sharma
,
Katrin Neumann
et al.
Article dans une revue
hal-04716990
v1
|
|
The human pre-replication complex is an open complex
Jian Li
,
Jiangqing Dong
,
Weitao Wang
,
Daqi Yu
,
Xinyu Fan
et al.
Article dans une revue
hal-03974204
v1
|
|
OKseqHMM: a genome-wide replication fork directionality analysis toolkit
Yaqun Liu
,
Xia Wu
,
Yves D’aubenton-Carafa
,
Claude Thermes
,
Chun-Long Chen
Article dans une revue
hal-03974116
v2
|
|
Genome-wide measurement of DNA replication fork directionality and quantification of DNA replication initiation and termination with Okazaki fragment sequencing
Xia Wu
,
Yaqun Liu
,
Yves D’aubenton-Carafa
,
Claude Thermes
,
Olivier Hyrien
et al.
Article dans une revue
(data paper)
hal-04265334
v1
|
|
Mistimed origin licensing and activation stabilize common fragile sites under tight DNA-replication checkpoint activation
Olivier Brison
,
Stefano Gnan
,
Dana Azar
,
Stéphane Koundrioukoff
,
Rodrigo Melendez Garcia
et al.
Article dans une revue
(data paper)
hal-04070726
v1
|
|
Editorial: Chromosomal fragile sites, genome instability and human diseases
Qing Hu
,
Advaitha Madireddy
,
Stefano Gnan
,
Chun-Long Chen
Article dans une revue
hal-03974130
v1
|
|
Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers
Rachel Deweerd
,
Eszter Németh
,
Ádám Póti
,
Nataliya Petryk
,
Chun-Long Chen
et al.
Article dans une revue
hal-03817515
v1
|
|
Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum
Chenyu Ma
,
Chunyan Li
,
Huijing Ma
,
Daqi Yu
,
Yufei Zhang
et al.
Article dans une revue
hal-04304197
v1
|
|
Cohesin-mediated loop anchors confine the locations of human replication origins
Daniel J Emerson
,
Peiyao A Zhao
,
Ashley L Cook
,
R. Jordan Barnett
,
Kyle N Klein
et al.
Article dans une revue
hal-03840949
v1
|
|
GC content but not nucleosome positioning directly contributes to intron-splicing efficiency in Paramecium
Stefano Gnan
,
Mélody Matelot
,
Marion Weiman
,
Olivier Arnaiz
,
Frédéric Guérin
et al.
Article dans une revue
hal-03400776
v1
|
|
Kronos scRT: a uniform framework for single-cell replication timing analysis
Stefano Gnan
,
Joseph M Josephides
,
Xia Wu
,
Manuela Spagnuolo
,
Dalila Saulebekova
et al.
Article dans une revue
hal-03840947
v2
|
|
DNA molecular combing-based replication fork directionality profiling
Marion Blin
,
Laurent Lacroix
,
Nataliya Petryk
,
Yan Jaszczyszyn
,
Chun-Long Chen
et al.
Article dans une revue
hal-03195930
v1
|
|
DNA transposons mediate duplications via transposition-independent and -dependent mechanisms in metazoans
Shengjun Tan
,
Huijing Ma
,
Jinbo Wang
,
Man Wang
,
Mengxia Wang
et al.
Article dans une revue
hal-03436190
v1
|
|
Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication
Weitao Wang
,
Kyle N Klein
,
Karel Proesmans
,
Hongbo Yang
,
Claire Marchal
et al.
Article dans une revue
hal-03443178
v2
|
|
Topoisomerase I prevents transcription-replication conflicts at transcription termination sites
Yaqun Liu
,
Yea-Lih Lin
,
Philippe Pasero
,
Chun-Long Chen
Article dans une revue
hal-03083175
v1
|
|
Editorial: DNA Replication Stress and Cell Fate
Lin Deng
,
Chun-Long Chen
,
Yuanliang Zhai
,
Yunzhou Dong
,
Huiqiang Lou
Article dans une revue
hal-03426812
v1
|
|
Identification of new driver and passenger mutations within APOBEC-induced hotspot mutations in bladder cancer
Ming-Jun Shi
,
Xiang-Yu Meng
,
Jacqueline Fontugne
,
Chun-Long Chen
,
François Radvanyi
et al.
Article dans une revue
hal-03015020
v1
|
|
Replication Stress Induces Global Chromosome Breakage in the Fragile X Genome
Arijita Chakraborty
,
Piroon Jenjaroenpun
,
Jing Li
,
Sami El Hilali
,
Andrew Mcculley
et al.
Article dans une revue
hal-03015043
v1
|
|
The impact of transcription-mediated replication stress on genome instability and human disease
Stefano Gnan
,
Yaqun Liu
,
Manuela Spagnuolo
,
Chun-Long Chen
Article dans une revue
hal-03015011
v1
|
|
DNA polymerase α interacts with H3-H4 and facilitates the transfer of parental histones to lagging strands
Zhiming Li
,
Xu Hua
,
Albert Serra-Cardona
,
Xiaowei Xu
,
Songlin Gan
et al.
Article dans une revue
hal-03015005
v1
|
|
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
Alexy Promonet
,
Ismaël Padioleau
,
Yaqun Liu
,
Lionel A. Sanz
,
Anna Biernacka
et al.
Article dans une revue
hal-02931000
v1
|
|
Exo1 recruits Cdc5 polo kinase to MutLγ to ensure efficient meiotic crossover formation.
Aurore Sanchez
,
Céline Adam
,
Felix Rauh
,
Yann Duroc
,
Lepakshi Ranjha
et al.
Article dans une revue
hal-03020386
v1
|
|
APOBEC-mediated Mutagenesis as a Likely Cause of FGFR3 S249C Mutation Over-representation in Bladder Cancer
Ming-Jun Shi
,
Xiang-Yu Meng
,
Philippe Lamy
,
A. Rouf Banday
,
Jie Yang
et al.
Article dans une revue
hal-02369388
v1
|
|
Transcription-mediated organization of the replication initiation program across large genes sets common fragile sites genome-wide
Olivier Brison
,
Sami El-Hilali
,
Dana Azar
,
Stéphane Koundrioukoff
,
Mélanie Schmidt
et al.
Article dans une revue
hal-02430920
v1
|
|
Replication landscape of the human genome
Nataliya Petryk
,
Malik Kahli
,
Yves d'Aubenton-Carafa
,
Yan Jaszczyszyn
,
Yimin Shen
et al.
Article dans une revue
hal-01412672
v1
|
|
From the chromatin interaction network to the organization of the human genome into replication N/U-domains
Rasha E Boulos
,
Hanna Julienne
,
Antoine Baker
,
Chun-Long Chen
,
Nataliya Petryk
et al.
Article dans une revue
cea-01120311
v1
|
|
Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm
Benjamin Audit
,
Antoine Baker
,
Chun-Long Chen
,
Aurélien Rappailles
,
Guillaume Guilbaud
et al.
Article dans une revue
hal-01557077
v1
|
|
From Simple Bacterial and Archaeal Replicons to Replication N/U-Domains
Olivier Hyrien
,
Aurélien Rappailles
,
Guillaume Guilbaud
,
Antoine Baker
,
Chun-Long Chen
et al.
Article dans une revue
istex
hal-01557075
v1
|
|
Linking the DNA strand asymmetry to the spatio-temporal replication program II. Accounting for neighbor-dependent substitution rates
A. Baker
,
C. L. Chen
,
H. Julienne
,
B. Audit
,
Y. d'Aubenton-Carafa
et al.
Article dans une revue
hal-01557084
v1
|
|
Linking the DNA strand asymmetry to the spatio-temporal replication program I. About the role of the replication fork polarity in genome evolution
A. Baker
,
H. Julienne
,
C. L. Chen
,
B. Audit
,
Y. d'Aubenton-Carafa
et al.
Article dans une revue
hal-01557082
v1
|
|
Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines.
Antoine Baker
,
Benjamin Audit
,
Chun-Long Chen
,
Benoit Moindrot
,
Antoine Leleu
et al.
Article dans une revue
inserm-00706043
v1
|
|
Replication-Associated Mutational Asymmetry in the Human Genome
C. L. Chen
,
L. Duquenne
,
B. Audit
,
G. Guilbaud
,
A. Rappailles
et al.
Article dans une revue
hal-01557088
v1
|
|
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.
Guillaume Guilbaud
,
Aurélien Rappailles
,
Antoine Baker
,
Chun-Long Chen
,
Alain Arneodo
et al.
Article dans une revue
inserm-00691534
v1
|
|
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes.
Chun-Long Chen
,
Aurélien Rappailles
,
Lauranne Duquenne
,
Maxime Huvet
,
Guillaume Guilbaud
et al.
Article dans une revue
ensl-00517756
v1
|
|
Genome-Wide Evolutionary Analysis of the Non-Coding RNA Genes and Non-Coding DNA of Paramecium tetraurelia.
Chen C.L.
,
H. Zhou
,
Liao J.Y.
,
Qu L.H.
,
Laurence Amar
RNA, 2009, 15(4), pp.503-14
Article dans une revue
hal-00413942
v1
|
|
The Chlamydomonas genome reveals the evolution of key animal and plant functions.
Sabeeha S Merchant
,
Simon E Prochnik
,
Olivier Vallon
,
Elizabeth H Harris
,
Steven J Karpowicz
et al.
Article dans une revue
hal-00198837
v1
|
|
The Chlamydomonas genome reveals the evolution of key animal and plant functions
S.S. Merchant
,
S.E. Prochnik
,
O. Vallon
,
E.H. Harris
,
S.J. Karpowicz
et al.
Science, 2007, 318, pp.245-250
Article dans une revue
hal-00188075
v1
|