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Claudia Bartoli

Junior Scientist at Institute of Genetics, Environment and Plant Protection (IGEPP), Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), France, Rennes
87%
Open access
45
Documents
Current affiliations
  • 1002348
Researcher identifiers
  • IdHAL claudia-bartoli
Contact

Presentation

I am a young scientist focusing on the coevolution between plants and microbes. My principal scientific aim is bringing proof to the holobiont concept thanks to a novel experimental coevolutionary approach that my team and I have developed. For this I am using Brassica rapa fast-cycling plants and Synthetic Microbial Communities (SynComs) and joint-Genomic Wide Association modelling. The general idea is to follow both plant allele evolution and microbial mutations during several plant cycles (from seed to seed). I am also interested in developing biocontrol strategies that take into consideration microbial-microbial interactions and environmental constraints. I am also collaborating with the University of Rennes 1 to develop SynComs for Persistent Organic Pollutants degradation such us PFAS.

Research domains

Populations and Evolution [q-bio.PE] Populations and Evolution [q-bio.PE]

Skills

Ecology & Evolution Genomics Genome-Wide-Association Analysis Microbiology

Publications

A genomic map of local adaptation in Arabidopsis thaliana to native non-pathogenic bacteria: from mono-infections to complex communities

Fabrice Roux , Daniela Ramírez-Sánchez , Rémi Duflos , Chrystel Gibelin-Viala , Baptiste Mayjonade
Symposium on Environmental and Agronomical Genomics organisé par France Génomique and the Research Group “Environmental Genomics", Feb 2024, Toulouse, France
Conference papers hal-04654308v1

Le potentiel symbiotique des microorganismes du sol et les leviers d'intervention

Pierre-Emmanuel Courty , Claudia Bartoli , Benoît Lefebvre , Juliana Almario , Cécile Revellin
Plant2pro, Sep 2021, Sophia-Antipolis, France
Conference papers hal-03593578v1
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Caractérisation rapide de la diversité génétique des populations de Pseudomonas syringae dans les vergers et cultures par PCR multiplex

Benoit Borschinger , Charlotte Chandeysson , Claudia Bartoli , Caroline Guilbaud , Luciana Parisi
7. Journées des Doctorants SPE, Jul 2015, Rennes, France
Conference papers hal-02740524v1
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New multiplex PCR method for rapid characterization of the genetic diversity of Pseudomonas syringae in orchards and crops

Benoit Borschinger , Charlotte Chandeysson , Claudia Bartoli , Caroline Guilbaud , Luciana Parisi
Innovation in Integrated & Organic Horticulture, INNOHORT 2015, Université d'Avignon et des Pays de Vaucluse (UAPV). FRA., Jun 2015, Avignon, France
Conference papers hal-02738776v1
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Du nouveau dans le groupe Pseudomonas syringae : un cadre général de classification et des outils simples et rapides d'identification

Odile Berge , Claudia Bartoli , Caroline Guilbaud , Charlotte Chandeysson , Cindy E. Morris
1. Colloque R-Syst / Muséum national d'histoire naturelle, Oct 2015, Versailles, France
Conference papers hal-02740515v1
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A broad and operational classification framework to address the ecology of Pseudomonas syringae populations

Odile Berge , Caroline Monteil , Claudia Bartoli , Caroline Guilbaud , Charlotte Chandeysson
9. International Conference on Pseudomonas syringae and related pathogens, Universidad de Málaga (Málaga). ESP.; Universidad Politécnica de Madrid (UPM). ESP.; Universidad de Navarra (Pamplona). ESP., Jun 2015, Malaga, Spain
Conference papers hal-02740206v1
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From the ecology of Pseudomonas syringae to probable scenarios of future disease emergence

Cindy E. Morris , Claudia Bartoli , Jay Ram Lamichhane , Caroline Monteil , Odile Berge
13. International Conference on Plant Pathogenic Bacteria (ICPPB), Jun 2014, Shanghai, China. 126 p
Conference papers hal-02738607v1
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Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins

Cyril Falentin , Houria Hadj-Arab , Fella Aissiou , Claudia Bartoli , Giuseppe Bazan
Genetic Resources, 2024, 5 (9), pp.61-71. ⟨10.46265/genresj.ryaj6068⟩
Journal articles hal-04608007v1
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Molecular and Genomic Characterization of the Pseudomonas syringae Phylogroup 4: An Emerging Pathogen of Arabidopsis thaliana and Nicotiana benthamiana

Diego Zavala , Isabel Fuenzalida , María Victoria Gangas , Micaela Peppino Margutti , Claudia Bartoli
Microorganisms, 2024, 10 (4), pp.707. ⟨10.3390/microorganisms10040707⟩
Journal articles hal-04204424v1

The genetic architecture of the adaptive potential of Arabidopsis thaliana in response to Pseudomonas syringae strains isolated from south-west France

Claudia Bartoli , Mylène Rigal , Carine Huard-Chauveau , Baptiste Mayjonade , Fabrice Roux
Plant Pathology, 2023, Plant Pathology, ⟨10.1111/ppa.13849⟩
Journal articles hal-04423624v1
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The genetic architecture of adaptation to leaf and root bacterial microbiota in Arabidopsis thaliana

Fabrice Roux , Léa Frachon , Claudia Bartoli
Molecular Biology and Evolution, 2023, 40 (5), pp.msad093. ⟨10.1093/molbev/msad093⟩
Journal articles hal-03806731v2
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Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance

Alice Miral , Adam Kautsky , Susete Alves Carvalho , Ludovic Cottret , Anne-Yvonne Guillerm-Erckelboudt
Microorganisms, 2022, 10 (9), pp.1859. ⟨10.3390/microorganisms10091859⟩
Journal articles hal-04204410v2
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli
Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩
Journal articles hal-04204399v2
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Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats

Daniela Ramírez-Sánchez , Chrystel Gibelin-Viala , Baptiste Mayjonade , Rémi Duflos , Elodie Belmonte
Frontiers in Microbiology, 2022, 13, pp.984832. ⟨10.3389/fmicb.2022.984832⟩
Journal articles hal-03806728v1
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Adaptation to plant communities across the genome of Arabidopsis thaliana

Léa Frachon , Baptiste Mayjonade , Claudia Bartoli , Nina-Coralie R Hautekèete , Fabrice Roux
Molecular Biology and Evolution, 2019, 36 (7), pp.1442-1456. ⟨10.1093/molbev/msz078⟩
Journal articles hal-02265398v1

Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes

Miaoyan Wang , Fabrice Roux , Claudia Bartoli , Carine Huard-Chauveau , Christopher Meyer
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (24), ⟨10.1073/pnas.1710980115⟩
Journal articles hal-04204489v1

A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

Léa Frachon , Claudia Bartoli , Sébastien Carrère , Olivier Bouchez , Adeline Chaubet
Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00967⟩
Journal articles hal-04204486v1
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A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

Léa Frachon , Claudia Bartoli , Sebastien Carrere , Olivier Bouchez , Adeline Chaubet
Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00967⟩
Journal articles hal-02373598v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau
The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩
Journal articles hal-02373577v1

Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes

Miaoyan Wang , Fabrice Roux , Claudia Bartoli , Carine Huard-Chauveau , Christopher Meyer
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (24), pp.E5440-E5449. ⟨10.1073/pnas.1710980115⟩
Journal articles hal-01806895v1
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Genome-wide association studies in plant pathosystems: toward an ecological genomics approach.

Fabrice Roux , Claudia Bartoli
Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩
Journal articles hal-01606059v1

Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach

Claudia Bartoli , Fabrice Roux
Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩
Journal articles hal-04204537v1

Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach

Claudia Bartoli , Fabrice Roux
Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩
Journal articles hal-04204877v1
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Extensive field survey, laboratory and greenhouse studies reveal complex nature of Pseudomonas Syringae-Associated hazelnut decline in central italy

Jay Ram Lamichhane , Claudia Bartoli , Leonardo Varvaro
PLoS ONE, 2016, 11 (2), pp.1-15. ⟨10.1371/journal.pone.0147584⟩
Journal articles hal-02629555v1
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A set of PCRs for rapid identification and characterization of Pseudomonas syringae phylogroups

Benoit Borschinger , Claudia Bartoli , Charlotte Chandeysson , Caroline Guilbaud , Luciana Parisi
Journal of Applied Microbiology, 2016, 120 (3), pp.714-723. ⟨10.1111/jam.13017⟩
Journal articles hal-01444672v1

Molecular mechanisms underlying the emergence of bacterial pathogens: an ecological perspective

Claudia Bartoli , Fabrice Roux , Jay Ram Lamichhane
Molecular Plant Pathology, 2016, 17 (1), pp.303-310. ⟨10.1111/mpp.12284⟩
Journal articles hal-02637743v1

Molecular mechanisms underlying the emergence of bacterial pathogens: an ecological perspective

Claudia Bartoli , Fabrice Roux , Jay Ram Lamichhane
Molecular Plant Pathology, 2016, 17 (2), pp.303-310. ⟨10.1111/mpp.12284⟩
Journal articles hal-04204886v1

Extensive Field Survey, Laboratory and Greenhouse Studies Reveal Complex Nature of Pseudomonas syringae-Associated Hazelnut Decline in Central Italy

Jay Ram Lamichhane , Claudia Bartoli , Leonardo Varvaro
PLoS ONE, 2016, 11 (2), pp.e0147584. ⟨10.1371/journal.pone.0147584⟩
Journal articles hal-04204883v1
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A set of PCRs for rapid identification and characterization of Pseudomonas syringae phylogroups

Benoit Borschinger , Claudia Bartoli , Charlotte Chandeysson , Caroline Guilbaud , Luciana Parisi
Journal of Applied Microbiology, 2016, 120 (3), pp.903. ⟨10.1111/jam.13219⟩
Journal articles hal-01444626v1

Plant pathogenic bacteria in open irrigation systems: what risk for crop health?

J. Lamichhane , Claudia Bartoli
Plant Pathology, 2015, 64 (4), pp.757-766. ⟨10.1111/ppa.12371⟩
Journal articles hal-04204943v1
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Un cadre pour évaluer le potentiel d’émergence d’agents phytopathogènes

Patricia Le Crenn , Cindy E. Morris , Odile Berge , Claudia Bartoli
Lettre aux Entreprises - INRA, 2015, N° 74, Juin 2015
Journal articles hal-02637034v1

Mutability in Pseudomonas viridiflava as a programmed balance between antibiotic resistance and pathogenicity

Claudia Bartoli , Jay Ram Lamichhane , Odile Berge , Leonardo Varvaro , Cindy E. Morris
Molecular Plant Pathology, 2015, 16 (8), pp.860-869. ⟨10.1111/mpp.12243⟩
Journal articles hal-02633614v1

A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker

Claudia Bartoli , Jay Ram Lamichhane , Odile Berge , Caroline Guilbaud , Leonardo Varvaro
Molecular Plant Pathology, 2015, 16 (2), pp.137 - 149. ⟨10.1111/mpp.12167⟩
Journal articles hal-02637074v1

Plant pathogenic bacteria in open irrigation systems: what risk for crop health?

Jay Ram Lamichhane , Claudia Bartoli
Plant Pathology, 2015, 64 (4), pp.757-766. ⟨10.1111/ppa.12371⟩
Journal articles hal-02640028v1
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Whole-genome sequencing of 10 Pseudomonas syringae strains representing different host range spectra

Claudia Bartoli , Sebastien Carrere , Jay Ram Lamichhane , Leonardo Varvaro , Cindy E. Morris
Genome Announcements, 2015, 3 (2), pp.e00379-15. ⟨10.1128/genomeA.00379-15⟩
Journal articles hal-02632911v1
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The Pseudomonas viridiflava phylogroups in the P. syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits.

Claudia Bartoli , Odile Berge , Caroline Monteil , Caroline Guilbaud , Giorgio M. Balestra
Environmental Microbiology, 2014, 16 (7), pp.2301-2315. ⟨10.1111/1462-2920.12433⟩
Journal articles hal-02638544v1
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A user's guide to a data base of the diversity of Pseudomonas syringae and its application to classifying strains in this phylogenetic complex

Odile Berge , Caroline Monteil , Claudia Bartoli , Charlotte Chandeysson , Caroline Guilbaud
PLoS ONE, 2014, 9 (9), pp.e105547. ⟨10.1371/journal.pone.0105547⟩
Journal articles hal-02640865v1
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Mise à jour de la classification du groupe Pseudomonas syringae et des outils simples et rapides d'identification

Charlotte Chandeysson , Odile Berge , Claudia Bartoli , Benoit Borschinger , Caroline Guilbaud
12. Rencontres Plantes-Bactéries, Jan 2016, Aussois, France. , 1 p., 2016, 12ièmes Rencontres Plantes-Bactéries, 11-15 janvier 2016, Centre Paul Langevin 75300 Aussois
Conference poster hal-02742317v1
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Impact of ground cover on Pseudomonas syringae communities in kiwifruit orchards

Benoit Borschinger , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud , Luciana Parisi
10. International symposium on phyllosphere microbiology, Jul 2015, Ascona, Switzerland. 2015
Conference poster hal-02743486v1

Agroecological Protection to Support Plant Health: Where the Microbiota Fits In

Claudia Bartoli , Jean-Noël Aubertot , Isabelle Litrico , Christophe Mougel
Xavier Fauvergue; Adrien Rusch; Matthieu Barret; Marc Bardin; Emmanuelle Jacquin-Joly; Thibaut Malausa; Christian Lannou. Extended Biocontrol, Springer Netherlands, pp.119-125, 2022, 978-94-024-2150-7. ⟨10.1007/978-94-024-2150-7_10⟩
Book sections hal-04181895v1

Protection agroécologique pour le maintien de la santé des plantes

Claudia Bartoli , Jean-Noël Aubertot , Isabelle Litrico-Chiarelli , Christophe Mougel
Biocontrôle. Éléments pour une protection agroécologique des cultures., Éditions Quae, 376p., 2020, Savoir faire, 978-2-7592-3076-1
Book sections hal-04204459v1