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Journal articles
hal-01258214v1
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Insights into global diatom distribution and diversity in the world's ocean
Shruti Malviya
,
Eleonora Scalco
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Stephane Audic
,
Flora Vincenta
,
Alaguraj Veluchamy
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (11), pp.E1516-E1525. ⟨10.1073/pnas.1509523113⟩
Journal articles
hal-01545320v1
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Environmental sequencing provides reasonable estimates of the relative abundance of specific picoeukaryotes
Caterina R. Giner
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Irene Forn
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Sarah Romac
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Ramiro Logares
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Colomban de Vargas
Journal articles
hal-01332059v1
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Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Noan Le Bescot
,
Frédéric Mahé
,
Stéphane Audic
,
Céline Dimier
,
Marie-Jose Garet
Journal articles
hal-01305586v1
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Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton
Peter von Dassow
,
Uwe John
,
Hiroyuki Ogata
,
Ian Probert
,
El Mahdi Bendif
Journal articles
hal-01245155v1
|
|
Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Camille Clerissi
,
Yves Desdevises
,
Sarah Romac
,
Stéphane Audic
,
Colomban de Vargas
Journal articles
hal-01246259v1
|
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PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy
Johan Decelle
,
Sarah Romac
,
Rowena F Stern
,
El Mahdi Bendif
,
Adriana Zingone
Journal articles
hal-01149047v1
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Patterns and ecological drivers of ocean viral communities
Jennifer Brum
,
J Cesar Ignacio-Espinoza
,
Simon Roux
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Guilhem Doulcier
,
Silvia G. Acinas
Journal articles
hal-01768331v1
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Environmental characteristics of Agulhas rings affect interocean plankton transport
Emilie Villar
,
Gregory Farrant
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Michael Follows
,
Laurence Garczarek
,
Sabrina Speich
Journal articles
hal-01893637v1
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Open science resources for the discovery and analysis of Tara Oceans data
Stéphane Pesant
,
Fabrice Not
,
Marc Picheral
,
Stefanie Kandels-Lewis
,
Noan Le Bescot
Journal articles
hal-01253984v1
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Molecular diversity and distribution of marine fungi across 130 European environmental samples
Thomas A. Richards
,
Guy Leonard
,
Frédéric Mahé
,
Javier Del Campo
,
Sarah Romac
Journal articles
hal-01258213v1
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Tara Oceans studies plankton at PLANETARY SCALE
P. Bork
,
C. Bowler
,
Colomban de Vargas
,
G. Gorsky
,
E. Karsenti
Journal articles
hal-01258211v1
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Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing
Javier del Campo
,
Diego Mallo
,
Ramon Massana
,
Colomban de Vargas
,
Thomas A. Richards
Journal articles
hal-01258208v1
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Determinants of community structure in the global plankton interactome
Gipsi Lima-Mendez
,
Karoline Faust
,
Nicolas Henry
,
Johan Decelle
,
Sébastien Colin
Journal articles
hal-01234200v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Ramon Massana
,
Angélique Gobet
,
Stéphane Audic
,
David Bass
,
Lucie Bittner
Journal articles
hal-01191731v1
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Structure and function of the global ocean microbiome
Shinichi Sunagawa
,
Luis Pedro Coelho
,
Samuel Chaffron
,
Jens Roat Kultima
,
Karine Labadie
Journal articles
hal-01233742v1
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Swarm v2: highly-scalable and high-resolution amplicon clustering
Frédéric Mahé
,
Torbjørn Rognes
,
Christopher Quince
,
Colomban de Vargas
,
Micah Dunthorn
Journal articles
hal-01271077v1
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Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta)
El Mahdi Bendif
,
Ian Probert
,
Margaux Carmichael
,
Sarah Romac
,
Kyoko Hagino
Journal articles
hal-01258218v1
|
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Swarm: robust and fast clustering method for amplicon-based studies
Frédéric Mahé
,
Torbjørn Rognes
,
Christopher Quince
,
Colomban de Vargas
,
Micah Dunthorn
Journal articles
hal-01245140v1
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares
,
Shinichi Sunagawa
,
Guillem Salazar
,
Francisco M. Cornejo-Castillo
,
Isabel Ferrera
Journal articles
hal-01258219v1
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Morphospecies versus phylospecies concepts for evaluating phytoplankton diversity: the case of the Coccolithophores
Jeremy R. Young
,
Hui Liu
,
Ian Probert
,
Stephane Aris-Brosou
,
Colomban de Vargas
Journal articles
hal-01258220v1
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Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context
Micah Dunthorn
,
Johannes Otto
,
Simon A. Berger
,
Alexandros Stamatakis
,
Frédéric Mahé
Journal articles
hal-01258215v1
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Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle
Gregory Carrier
,
Matthieu Garnier
,
Loïc Le Cunff
,
Gaël Bougaran
,
Ian Probert
Journal articles
hal-01100651v1
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SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications
Aurore André
,
Frédéric Quillévéré
,
Raphaël Morard
,
Yurika Ujiié
,
Gilles Escarguel
Journal articles
hal-01100608v1
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Diverse molecular signatures for ribosomally ‘active’ Perkinsea in marine sediments
Aurélie Chambouvet
,
Cédric Berney
,
Sarah Romac
,
Stéphane Audic
,
Finlay Maguire
Journal articles
hal-01100661v1
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Patterns of Rare and Abundant Marine Microbial Eukaryotes
Ramiro Logares
,
Stéphane Audic
,
David Bass
,
Lucie Bittner
,
Christophe Boutte
Journal articles
hal-01149637v1
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Deep relationships of Rhizaria revealed by phylogenomics: A farewell to Haeckel's Radiolaria
Roberto Sierra
,
Mikhail V. Matz
,
Galina Aglyamova
,
Loïc Pillet
,
Johan Decelle
Journal articles
hal-01258221v1
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Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans.
Johan Decelle
,
Patrick Martin
,
Katsiaryna Paborstava
,
David W Pond
,
Geraint Tarling
Journal articles
hal-00817877v1
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|
The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer
Aurore Andre
,
Agnes Weiner
,
Frederic Quillevere
,
Ralf Aurahs
,
Raphaël Morard
Journal articles
hal-00797451v1
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|
Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: a perspective on the morphological species concept in planktonic foraminifera
Frederic Quillevere
,
Raphaël Morard
,
Gilles Escarguel
,
Christophe Jean Douady
,
Y Ujiie
Journal articles
hal-00911466v1
|
|
On the description of Tisochrysis lutea gen. nov sp nov and Isochrysis nuda sp nov in the Isochrysidales, and the transfer of Dicrateria to the Prymnesiales (Haptophyta)
El Mahdi Bendif
,
Ian Probert
,
Declan C. Schroeder
,
Colomban de Vargas
Journal articles
hal-01258231v1
|
|
Ecological modeling of the temperature dependence of cryptic species of planktonic Foraminifera in the Southern Hemisphere
Raphael Morard
,
Frederic Quillevere
,
Gilles Escarguel
,
Thibault de Garidel-Thoron
,
Colomban de Vargas
Journal articles
hal-00911448v1
|
|
454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes
Elianne Egge
,
Lucie Bittner
,
Tom Andersen
,
Stéphane Audic
,
Colomban de Vargas
Journal articles
hal-01258226v1
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|
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou
,
Dipankar Bachar
,
Stéphane Audic
,
David Bass
,
Cédric Berney
Journal articles
hal-01253994v1
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Bioprospecting Marine Plankton
Heni Abida
,
Sandrine Ruchaud
,
Laurent Rios
,
Anne Humeau
,
Ian Probert
Journal articles
hal-01258229v1
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|
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Pascal Hingamp
,
Nigel Grimsley
,
Silvia G Acinas
,
Camille Clerissi
,
Lucie Subirana
Journal articles
hal-01258223v1
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|
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.
Lucie Bittner
,
Angélique Gobet
,
Stéphane Audic
,
Sarah Romac
,
Elianne S Egge
Journal articles
hal-00817857v1
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|
Two distinct lineages in the radiolarian Order Spumellaria having different ecological preferences
Yoshiyuki Ishitani
,
Yurika Ujiié
,
Colomban de Vargas
,
Fabrice Not
,
Kozo Takahashi
Journal articles
hal-01258236v1
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An original mode of symbiosis in open ocean plankton
Johan Decelle
,
Ian Probert
,
Lucie Bittner
,
Yves Desdevises
,
Sébastien Colin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (44), pp.18000-18005. ⟨10.1073/pnas.1212303109⟩
Journal articles
hal-01258241v1
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In situ survey of life cycle phases of the coccolithophore Emiliania huxleyi (Haptophyta)
Miguel J. Frada
,
Kay D. Bidle
,
Ian Probert
,
Colomban de Vargas
Journal articles
hal-01258234v1
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Longitudinal differentiation among pelagic populations in a planktic foraminifer.
Yurika Ujiié
,
Takahiro Asami
,
Thibault de Garidel-Thoron
,
Liu Liu
,
Yoshiyuki Ishitani
Journal articles
hal-00866864v1
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|
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
Ramiro Logares
,
Stéphane Audic
,
Sébastien Santini
,
Massimo C. Pernice
,
Colomban de Vargas
Journal articles
hal-01258237v1
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|
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
Jan Pawlowski
,
Stéphane Audic
,
Sina Adl
,
David Bass
,
Lassaâd Belbahri
Journal articles
hal-01258240v1
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|
Molecular Phylogeny and Morphological Evolution of the Acantharia (Radiolaria)
Johan Decelle
,
Noritoshi Suzuki
,
Frédéric Mahé
,
Colomban de Vargas
,
Fabrice Not
Journal articles
hal-01258238v1
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|
New evidence for morphological and genetic variation in the cosmopolitan coccolithophore emiliania huxleyi (prymnesiophyceae) from the cox1b-atp4 genes
Kyoko Hagino
,
El Mahdi Bendif
,
Jeremy R. Young
,
Kazuhiro Kogame
,
Ian Probert
Journal articles
hal-01258248v1
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A Holistic Approach to Marine Eco-Systems Biology
Eric Karsenti
,
Silvia G. Acinas
,
Peer Bork
,
Chris Bowler
,
Colomban de Vargas
Journal articles
hal-01893669v1
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Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms
Antonio Pagarete
,
Gildas Le Corguille
,
Bela Tiwari
,
Hiroyuki Ogata
,
Colomban de Vargas
Journal articles
hal-01258250v1
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|
Worldwide Genotyping in the Planktonic Foraminifer Globoconella inflata: Implications for Life History and Paleoceanography
Raphaël Morard
,
Frederic Quillevere
,
Christophe Jean Douady
,
Colomban de Vargas
,
Thibault de Garidel-Thoron
Journal articles
hal-00657029v1
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Transcriptome Analyses Reveal Differential Gene Expression Patterns Between the Life-Cycle Stages of Emiliania Huxleyi (haptophyta) and Reflect Specialization to Different Ecological Niches1: Gene Expression in E. Huxleyi
Sebastian D. Rokitta
,
Lennart J. De Nooijer
,
Scarlett Trimborn
,
Colomban de Vargas
,
Björn Rost
Journal articles
hal-01258249v1
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Phytoplankton Biogeography and Community Stability in the Ocean
Pedro Cermeno
,
Colomban de Vargas
,
Fatima Abrantes
,
Paul G. Falkowski
Journal articles
hal-01258253v1
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|
A guide to extant coccolithophores (Calcihaptophycidae, Haptophyta) using light microscopy
Miguel Frada
,
Jeremy Young
,
Mario Cachão
,
Silvia Lino
,
Ana Martins
Journal of Nannoplankton Research, 2010, 31 (2), pp.58-112
Journal articles
hal-01258257v1
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A Time line of the Environmental Genetics of the Haptophytes
Hui Liu
,
Stephane Aris-Brosou
,
Ian Probert
,
Colomban de Vargas
Journal articles
hal-01258256v1
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|
Pelagodinium gen. nov and P-beii comb. nov., a Dinoflagellate Symbiont of Planktonic Foraminifera
Raffaele Siano
,
Marina Montresor
,
Ian Probert
,
Fabrice Not
,
Colomban de Vargas
Journal articles
hal-01258255v1
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|
Coiling dimorphism within a genetic type of the planktonic foraminifer Globorotalia truncatulinoides
Yurika Ujiié
,
Thibault de Garidel-Thoron
,
S Watanabe
,
P Wiebe
,
Colomban de Vargas
Journal articles
hal-00869295v1
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|
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus
Adam Monier
,
Antonio Pagarete
,
Colomban de Vargas
,
Michael J. Allen
,
Betsy Read
Journal articles
hal-01258265v1
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|
New Insights into the Diversity of Marine Picoeukaryotes
Fabrice Not
,
Javier Del Campo
,
Vanessa Balague
,
Colomban de Vargas
,
Ramon Massana
Journal articles
hal-01258270v1
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|
Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans
Hui Liu
,
Ian Probert
,
Julia Uitz
,
Hervé Claustre
,
Stephane Aris-Brosou
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (31), pp.12803-12808. ⟨10.1073/pnas.0905841106⟩
Journal articles
hal-01258271v1
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|
Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
Peter Von Dassow
,
Hiroyuki Ogata
,
Ian Probert
,
Patrick Wincker
,
Corinne da Silva
Journal articles
hal-01258261v1
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|
Light-Dependent Transcriptional Regulation of Genes of Biogeochemical Interest in the Diploid and Haploid Life Cycle Stages of Emiliania huxleyi
Sophie Richier
,
Marie-Emmanuelle Kerros
,
Colomban de Vargas
,
Liti Haramaty
,
Paul G. Falkowski
Journal articles
hal-01258264v1
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|
Acquired phototrophy in aquatic protists
Diane K. Stoecker
,
Matthew D. Johnson
,
Colomban de Vargas
,
Fabrice Not
Journal articles
hal-01258262v1
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|
Paleodictyon nodosum: A living fossil on the deep-sea floor
Peter A. Rona
,
Adolf Seilacher
,
Colomban de Vargas
,
Andrew J. Gooday
,
Joan M. Bernhard
Journal articles
hal-01258272v1
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|
Morphological recognition of cryptic species in the planktonic foraminifer Orbulina universa
Raphael Morard
,
Frederic Quillevere
,
Gilles Escarguel
,
Y Ujiie
,
Thibault de Garidel-Thoron
Journal articles
hal-00869299v1
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|
Host-virus shift of the sphingolipid pathway along an Emiliania huxleyi bloom: survival of the fattest
Antonio Pagarete
,
Michael J. Allen
,
William H. Wilson
,
Susan A. Kimmance
,
Colomban de Vargas
Journal articles
hal-01258269v1
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|
First observations of heterococcolithophore-holococcolithophore life cycle combinations in the family Pontosphaeraceae (Calcihaptophycideae, Haptophyta)
Miguel Frada
,
Isabella Percopo
,
Jeremy Young
,
Adriana Zingone
,
Colomban de Vargas
Journal articles
hal-01258259v1
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|
Causal or casual link between the rise of nannoplankton calcification and a tectonically-driven massive decrease in Late Triassic atmospheric CO2?
Yves Goddéris
,
Yannick Donnadieu
,
Colomban de Vargas
,
Raymond T. Pierrehumbert
,
Gilles Dromart
Journal articles
hal-00318857v1
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|
Causal or casual link between the rise of nannoplankton calcification and a tectonically-driven massive decrease in Late Triassic atmospheric CO2 ?
Y. Godderis
,
Y. Donnadieu
,
C. de Vargas
,
Raymond T. Pierrehumbert
,
Gilles Dromart
Earth and Planetary Science Letters, 2008, 267, pp.247-265
Journal articles
hal-00339358v1
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|
Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record
J. Pawlowski
,
I. Bolivar
,
J.F. Fahrni
,
C. de Vargas
,
Manolo Gouy
Journal articles
hal-00434978v1
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