Cyril Pommier

Plant research data engineer.
93
Documents
Identifiants chercheurs

Présentation

Cyril Pommier is a bio-informatician with a multidisciplinary background in molecular biology and computer science. He worked four years on genomic databases and has been working since 2007 on plant data management in global data federations with a focus on crops phenomic. He builds bridges between plant experimentation in the field, molecular biology and computer science from information system development to data management frameworks. He is now in charge of data and federation in the URGI PlantBioinfoPF, an INRAE bioinformatic platform part of ELIXIR-fr. Cyril Pommier is also co leader of the Plant community of ELIXIR (https://elixir-europe.org/communities/plant-sciences), the European Infrastructure for life science and co leader the Information System of Phenom-EMPHASIS, the national infrastructure for plant phenotyping. He is leading the building of data repositories (https://doi.org/10.34133/2019/1671403), data portals (https://urgi.versailles.inrae.fr/faidare/) and co leads international plant data standards (MIAPPE https://www.miappe.org , BrAPI https://www.brapi.org).

Publications

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Publications

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Mapping bread wheat trait ontologies for semantic interoperability

Claire Nédellec , Sophie Aubin , Clara Sauvion , Liliana Ibanescu , Sonia Bravo et al.
F1000Research, 2024, pp.1102. ⟨10.12688/f1000research.154860.1⟩
Article dans une revue hal-04717147 v1
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SyntenyViewer: a comparative genomics-driven translational research tool

Raphael Flores , Cécile Huneau , Laura Burlot , Mathilde Lainé , Erik Kimmel et al.
Database - The journal of Biological Databases and Curation, 2023, 2023, ⟨10.1093/database/baad027⟩
Article dans une revue hal-04099923 v1

The FAIR Cookbook - the essential resource for and by FAIR doers

Philippe Rocca-Serra , Wei Gu , Vassilios Ioannidis , Tooba Abbassi-Daloii , Salvador Capella-Gutierrez et al.
Scientific Data , 2023, 10 (1), pp.292. ⟨10.1038/s41597-023-02166-3⟩
Article dans une revue hal-04538400 v1

ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage , Tony Burdett , Bert Droesbeke , Karoly Erdos , Rolando Fernandez et al.
Bioinformatics, 2022, 38 (11), pp.3141-3142. ⟨10.1093/bioinformatics/btac195⟩
Article dans une revue hal-04312070 v1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Sebastian Beier , Anne Fiebig , Cyril Pommier , Isuru Liyanage , Matthias Lange et al.
F1000Research, 2022, 11, pp.231. ⟨10.12688/f1000research.109080.1⟩
Article dans une revue hal-04456815 v1

Editorial: Phenotyping; From Plant, to Data, to Impact and Highlights of the International Plant Phenotyping Symposium - IPPS 2018

Cyril Pommier , Trevor Garnett , Carolyn Lawrence-Dill , Tony Pridmore , Michelle Watt et al.
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.618342⟩
Article dans une revue hal-03219213 v1
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Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Evangelia Papoutsoglou , Daniel Faria , Daniel Arend , Elizabeth Arnaud , Ioannis Athanasiadis et al.
New Phytologist, 2020, 227 (1), pp.260-273. ⟨10.1111/nph.16544⟩
Article dans une revue hal-02949641 v1

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

Elizabeth Arnaud , Marie-Angélique Laporte , Soonho Kim , Céline Aubert , Sabina Leonelli et al.
Gene Expression Patterns, 2020, 1, pp.100105. ⟨10.1016/j.patter.2020.100105⟩
Article dans une revue hal-02949637 v1
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Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System

Pascal Neveu , Anne Tireau , Nadine Hilgert , Vincent Negre , Jonathan Mineau-Cesari et al.
New Phytologist, 2019, 221 (1), pp.588-601. ⟨10.1111/nph.15385⟩
Article dans une revue hal-02627721 v1
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The walnut genetic resources of INRA: chronological phenotypic data and ontology

Anthony Bernard , Teresa Barreneche , Marine Delmas , Sophie Durand , Cyril Pommier et al.
BMC Research Notes, 2019, 12 (1), pp.662. ⟨10.1186/s13104-019-4678-1⟩
Article dans une revue (data paper) hal-02626113 v1
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BrAPI - an Application Programming Interface for Plant Breeding Applications.

Rafael Abbeloos , Jan Erik Backlund , Martin Basterrechea Salido , Guillaume Bauchet , Omar Benites-Alfaro et al.
Bioinformatics, 2019, 35 (20), pp.4147-4155. ⟨10.1093/bioinformatics/btz190⟩
Article dans une revue hal-02626802 v1
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RepetDB: a unified resource for transposable element references

Joëlle Amselem , Guillaume Cornut , Nathalie Choisne , Michael Alaux , Françoise Alfama Depauw et al.
Mobile DNA, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩
Article dans une revue hal-02625212 v1
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Applying FAIR principles to plant phenotypic data management in GnpIS

Cyril Pommier , Célia Michotey , Guillaume Cornut , Pierre Roumet , Eric Duchêne et al.
Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩
Article dans une revue hal-02624031 v1
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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Françoise Alfama et al.
Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩
Article dans une revue hal-02278879 v1

Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping

Pawel Krajewski , Dijun Chen , Hanna Cwiek , Aalt D. J. van Dijk , Fabio Fiorani et al.
Journal of Experimental Botany, 2018, 69 (7), pp.1819-1819. ⟨10.1093/jxb/ery006⟩
Article dans une revue hal-02620800 v1
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Developing data interoperability using standards: A wheat community use case

Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann et al.
F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩
Article dans une revue lirmm-01652022 v2
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Towards an open grapevine information system

Anne-Françoise Adam-Blondon , Michael Alaux , Cyril Pommier , D Cantu , Z-M Cheng et al.
Horticulture research, 2016, 3, pp.16056. ⟨10.1038/hortres.2016.56⟩
Article dans une revue (article de synthèse) hal-01404714 v1
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TransPLANT resources for triticeae genomic data

Manuel Spannagl , Michael M. Alaux , Matthias Lange , Dan M. Bolser , Kai Christian Bader et al.
PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩
Article dans une revue hal-02635899 v1
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Measures for interoperability of phenotypic data: minimum information requirements and formatting

Thomas Altmann , Daniel Arend , Elizabeth Arnaud , Dijun Chen , Guillaume Cornut et al.
Plant Methods, 2016, 12, pp.1-18. ⟨10.1186/s13007-016-0144-4⟩
Article dans une revue hal-02640958 v1

Towards recommendations for metadata and data handling in plant phenotyping

Pawel Krajewski , Dijun Chen , Hanna Cwiek , Aalt D. J. van Dijk , Fabio Fiorani et al.
Journal of Experimental Botany, 2015, 66 (18), pp.5417-5427. ⟨10.1093/jxb/erv271⟩
Article dans une revue hal-02636470 v1
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GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Delphine D. Steinbach , Michael M. Alaux , Joelle J. Amselem , Nathalie Choisne , Sophie S. Durand et al.
Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩
Article dans une revue hal-02648084 v1

The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

J. Mark Cock , Lieven Sterck , Sophia Ahmed , Andrew E. Allen , Grigoris Amoutzias et al.
Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩
Article dans une revue hal-02649287 v1
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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae

J. Mark Cock , Lieven Sterck , Pierre Rouzé , Delphine Scornet , Andrew E. Allen et al.
Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩
Article dans une revue cea-00906990 v1

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

S. Aubourg , V. Brunaud , C. Bruyere , M. Cock , R. Cooke et al.
Nucleic Acids Research, 2005, 33, pp.D641-D646
Article dans une revue hal-00313737 v1
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GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

Sebastien Aubourg , Veronique Brunaud , Clémence Bruyère , J. Mark Cock , Richard Cooke et al.
Nucleic Acids Research, 2005, 33, pp.D641-D646. ⟨10.1093/nar/gki115⟩
Article dans une revue hal-01189162 v1

Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data Lifecycle

Cyril Pommier , Frederik Coppens , Hanna Ćwiek-Kupczyńska , Daniel Faria , Sebastian Beier et al.
Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development, Springer International Publishing, pp.149-160, 2023, ⟨10.1007/978-3-031-13276-6_8⟩
Chapitre d'ouvrage hal-03896793 v1
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Mining plant genomic and genetic data using the GnpIS information system

Anne-Francoise Adam-Blondon , Michael Alaux , Sophie Durand , Thomas Letellier , Guillaume Merceron et al.
Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩
Chapitre d'ouvrage hal-03206731 v1

Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia Sclerotiorum

Sabine, Helma Fillinger , Joelle J. Amselem , Francois Artiguenave , Arnaud Billault , Mathias Choquer et al.
Macromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9
Chapitre d'ouvrage hal-02820038 v1

Plant phenotyping data standards to enable sharing and integration

Cyril Pommier
2025 North American Plant Phenotyping Network Annual Conference, NAPPN, Feb 2025, Saint Louis (Missouri), United States
Communication dans un congrès hal-04967423 v1

FAIR Plant Phenomics Data Management Tools and Guidelines.

Cyril Pommier
Plant and Animal Genome, Jan 2024, San Diego, United States
Communication dans un congrès hal-04425516 v1

Plant phenotyping data standards to enable sharing and integration

Cyril Pommier
Phenoharmonis 2024, Bioversity; Digitag; INRAE; Phenome, May 2024, Montpelier, France
Communication dans un congrès hal-04967400 v1

Plant phenotyping data management from phenomics to integration for analysis and PGR characterizations: challenges and solutions from INRAE, ELIXIR and EMPHASIS

Cyril Pommier
Towards Data Linkage: Data Standardization for Agricultural Research., NARO, Oct 2024, Tsukuba, Japan
Communication dans un congrès hal-04967207 v1

Long Term Plant Phenomic Data Sharing in Generic Data Repositories (Zenodo, Dataverse, e!Dale) Using MIAPPE

Cyril Pommier , Erwan Le Floch , Daniel Arend , Flora D Anna
Plant and Animal Genome (PAG), Jan 2024, San Diego (CA), United States
Communication dans un congrès hal-04425548 v1
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Les outils de gestion de données de phénotypage soutenus par INRAE

Cyril Pommier , Anne Delaunay
AG RARE, INRAE, May 2023, Toulouse, France
Communication dans un congrès hal-04314299 v1

Plant science data management and integration: the heterogeneity and dispersion challenge

Cyril Pommier
Applied Bioinformatics in Life Sciences (4th edition), Mar 2022, Louvain, Belgium
Communication dans un congrès hal-03851454 v1

Plant Phenomics data management challenges and solutions based on the Minimum Information About Plant Phenotyping Experiments (MIAPPE)

Cyril Pommier
Ontologies Community of Practice, CGIAR, Nov 2020, Webinar, France
Communication dans un congrès hal-04314409 v1
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Developing infrastructures for FAIR data in plant biology

Cyril Pommier , Guillaume Cornut , Michael Alaux , Windpouire Esther Dzale Yeumo , Raphaël Flores et al.
Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany
Communication dans un congrès hal-03316569 v1
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Phenotype and genotype data sharing

Cyril Pommier
PAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, Californie, United States. pp.24 Slides
Communication dans un congrès hal-02789384 v1
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The Vitis Ontology: sustainable and FAIR (Findable, Accessible, Interoperable, Reusable) for consistent and complete data description through biologist friendly ontologies

Eric Duchêne , Cyril Pommier
The First Annual Meeting of COST Action CA17111 INTEGRAPE 2019, Mar 2019, Chania, Greece, 26-28 March 2019, Greece
Communication dans un congrès hal-02947459 v1
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Data standards for plant phenotyping: MIAPPE and its implementations

Cyril Pommier , Guillaume Cornut , Thomas Letellier , Célia Michotey , Pascal Neveu et al.
26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, Californie, United States. pp.24 slides
Communication dans un congrès hal-02789754 v1
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Phenome-Emphasis-Elixir: phenotyping data management and integration

Anne-Francoise Adam-Blondon , Cyril Pommier , Llorenç Cabrera Bosquet
Interenational Grape Genetics and Breeding Symposium, Jul 2018, Bordeaux, France. pp.16
Communication dans un congrès hal-02789613 v1

Developing grapevine FAIR Data

Cyril Pommier , Eric Duchêne , Thierry Lacombe , Timothée Flutre , Michael Alaux et al.
PAG Conference 2018, Jan 2018, San Diego, United States
Communication dans un congrès hal-02738117 v1
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Improving the « FAIRness » of Inra’s data for plant biology and breeding

Michael Alaux , Cyril Pommier , Esther Dzale Yeumo , Sophie Durand , Raphaël Flores et al.
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides
Communication dans un congrès hal-02790227 v1

BreedWheat GWAS data in GnpIS information system

Mathilde Lainé , Thomas Letellier , Raphaël Flores , Nacer Mohellibi , Cyril Pommier et al.
Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France
Communication dans un congrès hal-02340450 v1
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FAIR Data publication for phenomics data

Cyril Pommier
Integrative Bioinformatics Symposium 2018, BBSRC Rothamsted Research. GBR., Jun 2018, Rothamsted, United Kingdom. pp.52 slides + 40 slides
Communication dans un congrès hal-02787988 v1
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Standards for distributed Plant Phenotyping data integration: challenges and solutions.

Cyril Pommier
COST FA1306 "The quest for tolerant varieties - Phenotyping at plant and cellular level" - WG1 Meeting "Phenotyping: from the lab to the field", Mar 2018, Leuven, Belgium. pp.67 slides
Communication dans un congrès hal-01779751 v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Cyril Pommier et al.
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides
Communication dans un congrès hal-02788401 v1

EMBI-EBI Industry Workshop: Ontologies in Agriculture, Food and Nutrition

Cyril Pommier
Ontologies in Agriculture, Food and Nutrition, European Molecular Biology Laboratory (EMBL). GBR., Apr 2017, Cambridge, United Kingdom
Communication dans un congrès hal-02787834 v1
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Exemples d’outils et services pour la gestion et le partage des données à l’Inra

Cyril Pommier , Windpouire Esther Dzale Yeumo
Journée "Bonnes pratiques et outils liés à la mise en place d’une base de données recherche", Centre National de la Recherche Scientifique (CNRS). FRA., Dec 2017, Paris, France. pp.40 slides
Communication dans un congrès hal-02785564 v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Windpouire Esther Dzale Yeumo , Cyril Pommier , Michael Alaux , Guillaume Cornut et al.
4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides
Communication dans un congrès hal-02791168 v1

Distributed plant phenotyping data integration: challenges and feedback from French and international consortiums

Cyril Pommier
Data Scientist Big Data Plant Breeding, Wageningen University and Research Centre (WUR). NLD., Dec 2017, Wageningen, Netherlands
Communication dans un congrès hal-02788362 v1
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Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA

Cyril Pommier , Michael M. Alaux , Windpouire Esther Dzale Yeumo , Guillaume Cornut , Sophie S. Durand et al.
Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic
Communication dans un congrès hal-02794139 v1
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Reusing the NCBO BioPortal technology for agronomy to build AgroPortal

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé-Yeumo et al.
ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States
Communication dans un congrès hal-01398251 v1
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Exposing French agronomic resources as Linked Open Data

Aravind Venkatesan , Nordine El Hassouni , Florian Phillipe , Cyril Pommier , Hadi Quesneville et al.
IN-OLIVE, Jun 2016, Montpellier, France
Communication dans un congrès hal-01411759 v1

Exposing French agronomic resources as Linked Open Data

Aravind Venkatesan , Nordine El Hassouni , Florian Philippe , Cyril Pommier , Hadi Quesneville et al.
SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2015, Cambridge, United Kingdom
Communication dans un congrès lirmm-01274884 v1
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Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii

Cyril Pommier , Pawel Krajewski , Thomas Letellier , Hanna Cwiek , Célia Michotey et al.
23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States
Communication dans un congrès hal-02739236 v1
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Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource

Nacer Mohellibi , Nathalie Choisne , Aminah A. Keliet , Daphné Verdelet , Françoise Alfama et al.
23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, Californie, United States. pp.24 slides
Communication dans un congrès hal-02741780 v1

GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach , Guillaume Merceron , Célia Michotey , Raphaël-Gauthier Flores , Nacer Mohellibi et al.
23. Plant and Animal Genome, Jan 2015, San Diego, United States
Communication dans un congrès hal-01174322 v1
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Towards efficient data integration and knowledge management in the Agronomic domain

Aravind Venkatesan , Nordine El Hassouni , Florian Phillipe , Cyril Pommier , Hadi Quesneville et al.
APIA: Applications Pratiques de l'Intelligence Artificielle, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Jul 2015, Rennes, France. pp.117-124
Communication dans un congrès hal-01176903 v1
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URGI plant and fungi platform: distributed resources through GMOD tools

Joelle J. Amselem , Michael M. Alaux , Nathalie Choisne , Olivier Inizan , Nicolas Lapalu et al.
Plant and Animal Genome conference XXII, GMOD session, Jan 2014, San Diego (CA), United States
Communication dans un congrès hal-02796293 v1

Open data for grapevine biology

Anne-Francoise Adam-Blondon , Eric Duchêne , Sophie Durand , Jérôme Grimplet , Thierry Lacombe et al.
XI. International Congress on Grapevine Breeding and Genetics, Jul 2014, Pékin, China
Communication dans un congrès hal-01352690 v1
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Plant biology open data interoperability in the big data era

Anne-Francoise Adam-Blondon , Sophie S. Durand , Erik Kimmel , Raphaël-Gauthier R.-G. Flores , Cyril Pommier et al.
Plant Biology Europe EPSO/FEPBS 2014, Jun 2014, Dublin, Germany
Communication dans un congrès hal-02801067 v1

Information system for phenotype data: trait, trials and genotypes identification and integration

Cyril Pommier , Michael M. Alaux , Sophie S. Durand , Raphaël-Gauthier R.-G. Flores , Aminah A. Keliet et al.
22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States
Communication dans un congrès hal-02795958 v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.
Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France
Communication dans un congrès hal-01268379 v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault et al.
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p
Communication dans un congrès hal-01019754 v1
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Forest Tree data in FAIDARE, a plant data discovery portal

Maud Marty , Najwa Lakmouri , Cyril Pommier , Célia Michotey
Plant and Animal Genome (PAG), Jan 2025, San Diego (CA), United States
Poster de conférence hal-04927258 v1
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Learning path development for plant data management

Vanita Haurheeram , Célia Michotey , Cyril Pommier , Anne-Françoise Adam-Blondon , Elixir Training Platform
ELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. f1000research.com, https://doi.org/10.7490/f1000research.1119444.1, 2023, ⟨10.7490/f1000research.1119444.1⟩
Poster de conférence hal-04428391 v1
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Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing

Erwan Le Floch , Anne-Françoise Adam-Blondon , Isabelle Alic , Bert Droesbeke , Stijn Dhondt et al.
7th International Plant Phenotyping Symposium, Sep 2022, Wageningen, Netherlands. , 2022, ⟨10.5281/zenodo.7148792⟩
Poster de conférence hal-03800325 v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard et al.
14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩
Poster de conférence lirmm-02351000 v1
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PHIS, a plant science ontology-driven Phenotyping Hybrid Information System

Pascal Neveu , Anne Tireau , Nadine Hilgert , Vincent Negre , Jonathan Mineau-Cesari et al.
NETTAB 2018: Building a FAIR Bioinformatics environment, Oct 2018, Genova, Italy. , 1 p., 2018
Poster de conférence hal-02788853 v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Esther Dzale Yeumo , Cyril Pommier , Michaël Alaux , Guillaume Cornut et al.
Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017
Poster de conférence hal-01606277 v1
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics

Célia Michotey , Christel Anger , François Ehrenmann , Odile Rogier , Véronique V. Jorge et al.
35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015
Poster de conférence hal-02795537 v1
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PHENOME: French Plant Phenomic Center

Francois F. Tardieu , Jacques Le Gouis , Pamela Lucas , Frédéric Baret , Pascal Neveu et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Poster de conférence hal-02744329 v1

PHENOME: French Plant Phenomic Center

Francois Tardieu , Jacques Le Gouis , Pamela Lucas , Frédéric Baret , Pascal Neveu et al.
EPPN Plant Phenotyping Symposium, Nov 2015, Barcelona, Spain. 2015
Poster de conférence hal-01229565 v1

PHENOME: French Plant Phenomic Center

Jacques Le Gouis , Pamela Lucas , Frédéric Baret , Pascal Neveu , Cyril Pommier et al.
9th International Wheat Conference, Sep 2015, Sydney, Australia. 2015
Poster de conférence hal-02800017 v1

Data integration in the agronomic domain : national and international data discovery system

Florian Philippe , Aravind Venkatesan , Nordine El Hassouni , Cyril Pommier , Manuel Ruiz et al.
JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , Post-105 (#59), 2015
Poster de conférence lirmm-01274725 v1
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BreedWheat genotyping and phenotyping data in GnpIS information system

Marie Laine , Thomas Letellier , Raphaël-Gauthier R.-G. Flores , Loïc Couderc , Nacer Mohellibi et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015
Poster de conférence hal-02801654 v1

Wheat Crop Ontology: A Species Specific Trait Ontology. Use Case: The URGI Information System

Cyril Pommier , Michael M. Alaux , Erik Kimmel , Delphine Steinbach , Elizabeth Arnaud et al.
Plant and Animal Genome, Jan 2013, San Diego, United States. 2013
Poster de conférence hal-02810186 v1
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ELIXIR-CONVERGE D5.5 Report on the remaining four DMP processes

Laura Portell-Silva , Vanita Haurheeram , Anne-Françoise Adam-Blondon , Salvador Capella-Gutierrez , Marina Popleteeva et al.
ELIXIR. 2023
Rapport (rapport contrat/projet) hal-04503558 v1
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D4.5:Data policy rules

François Tardieu , Pascal Neveu , Cyril Pommier
INRAE. 2021, 10p
Rapport hal-04986212 v1
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EU Project N° 739514 Acronym EMPHASIS-PREP Full title Preparation for EMPHASIS: European Infrastructure for multi-scale Plant Phenomics and Simulation for food security in a changing climate Project website emphasis.plant-phenotyping.eu

Francois Tardieu , Pascal Neveu , Cyril Pommier , Llorenç Cabrera-Bosquet
INRAE. 2019
Rapport (rapport de recherche) hal-04986218 v1
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RDF Query interface from BrAPI web service source

Cyril Pommier , Windpouire Esther Dzale Yeumo , Michael Alaux
INRAE. 2017, https://rd-alliance.org/sites/default/files/attachment/Creation%20of%20a%20Query%20interface%20for%20phenotyping%20data%20Final%20Report.pdf
Rapport hal-04505409 v1
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Projet Coll-GATE

Anne-Françoise Adam-Blondon , Claude Pavis , Franciane Nuissier , Thierry Lacombe , Nicolas Guilhot et al.
[Contract] 2015
Rapport (rapport contrat/projet) hal-02793863 v1
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Rapport d'étape chantier entrepôt et annuaire institutionnels pour les données de la recherche

Windpouire Esther Dzale Yeumo , Lydie Soler , Sophie Aubin , Christine Boizot-Szantaï , Patrice Buche et al.
[0] 2014, 18 p
Rapport hal-02801608 v1
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Rapport de synthèse du chantier DOI

Windpouire Esther Dzale Yeumo , Lydie Soler , Michael M. Alaux , Robert R. Bossy , Sebastien Carrere et al.
[0] 2014, 47 p
Rapport hal-02801364 v1