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Dao-Xiu Zhou

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Publications

DNA methylation remodeling and the functional implication during male gametogenesis in rice

Xue Li , Bo Zhu , Yue Lu , Feng Zhao , Qian Liu
Genome Biology, 2024, 25 (1), pp.84. ⟨10.1186/s13059-024-03222-w⟩
Article dans une revue hal-04557022v1

Lysine acetylation of histone acetyltransferase adaptor protein ADA2 is a mechanism of metabolic control of chromatin modification in plants

Yue Yu , Feng Zhao , Yaping Yue , Yu Zhao , Dao-Xiu Zhou
Nature Plants, 2024, 10 (3), pp.439-452. ⟨10.1038/s41477-024-01623-0⟩
Article dans une revue hal-04557023v1

Lysine acetylation of histone acetyltransferase adaptor protein ADA2 is a mechanism of metabolic control of chromatin modification in plants

Yue Yu , Feng Zhao , Yaping Yue , Yu Zhao , Dao-Xiu Zhou
Article dans une revue hal-04451949v1

An enhanced network of energy metabolism, lysine acetylation, and growth-promoting protein accumulation is associated with heterosis in elite hybrid rice

Zhou D
Plant Communications, 2023, 4 (4), pp.100560. ⟨10.1016/j.xplc.2023.100560⟩
Article dans une revue hal-04450630v1

Metabolic regulation of the plant epigenome

Yue Lu , Qing Bu , Mingli Chuan , Xiaoyun Cui , Yu Zhao
Plant Journal, 2023, 114 (5), pp.1001-1013. ⟨10.1111/tpj.16122⟩
Article dans une revue hal-04454284v1

DELLA ‐mediated gene repression is maintained by chromatin modification in rice

Junjie Li , Qi Li , Wentao Wang , Xinran Zhang , Chen Chu
EMBO Journal, 2023, 42 (21), ⟨10.15252/embj.2023114220⟩
Article dans une revue hal-04452019v1

A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

Qingxiao Jia , Xinran Zhang , Qian Liu , Junjie Li , Wentao Wang
Genome Biology, 2023, 24 (1), pp.198. ⟨10.1186/s13059-023-03042-4⟩
Article dans une revue hal-04452014v1
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S‐Nitrosylation of the histone deacetylase HDA19 stimulates its activity to enhance plant stress tolerance in Arabidopsis

Yu Zheng , Zhenting Li , Xiaoyun Cui , Zheng Yang , Chun Bao
Plant Journal, 2023, 114 (4), pp.836-854. ⟨10.1111/tpj.16174⟩
Article dans une revue hal-04304589v2

ACL and HAT1 form a nuclear module to acetylate histone H4K5 and promote cell proliferation

Qiutao Xu , Yaping Yue , Biao Liu , Zhengting Chen , Xuan Ma
Nature Communications, 2023, 14 (1), pp.3265. ⟨10.1038/s41467-023-39101-4⟩
Article dans une revue hal-04452002v1

Paternal DNA methylation is remodeled to maternal levels in rice zygote

Qian Liu , Xuan Ma , Xue Li , Xinran Zhang , Shaoli Zhou
Nature Communications, 2023, 14 (1), pp.6571. ⟨10.1038/s41467-023-42394-0⟩
Article dans une revue hal-04452023v1
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Multifaceted functions of histone deacetylases in stress response

Xiaoyun Cui , Avilien Dard , Jean-Philippe Reichheld , Dao-Xiu Zhou
Trends in Plant Science, inPress, ⟨10.1016/j.tplants.2023.06.006⟩
Article dans une revue hal-04155434v1

A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex

Feng-Quan Tan , Wentao Wang , Junjie Li , Yue Lu , Bo Zhu
The Plant cell, 2022, 34 (8), pp.2969-2988. ⟨10.1093/plcell/koac133⟩
Article dans une revue hal-04298388v1

Histone deacetylases control lysine acetylation of ribosomal proteins in rice

Qiutao Xu , Qian Liu , Zhengting Chen , Yaping Yue , Yuan Liu
Nucleic Acids Research, 2021, 49 (8), pp.4613-4628. ⟨10.1093/nar/gkab244⟩
Article dans une revue hal-04450654v1

Metabolic control of histone demethylase activity involved in plant response to high temperature

Xiaoyun Cui , Yu Zheng , Yue Lu , Emmanuelle Issakidis-Bourguet , Dao-Xiu Zhou
Plant Physiology, 2021, 185 (4), pp.1813-1828. ⟨10.1093/plphys/kiab020⟩
Article dans une revue hal-04452038v1
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Histone deacetylases control lysine acetylation of ribosomal proteins in rice

Qiutao Xu , Qian Liu , Zhengting Chen , Yaping Yue , Yuan Liu
Nucleic Acids Research, 2021, 49 (8), pp.4613-4628. ⟨10.1093/nar/gkab244⟩
Article dans une revue hal-03331709v1

Metabolic control of histone demethylase activity involved in plant response to high temperature

Xiaoyun Cui , Yu Zheng , Yue Lu , Emmanuelle Issakidis-Bourguet , Dao-Xiu Zhou
Plant Physiology, 2021, 185 (4), pp.1813-1828. ⟨10.1093/plphys/kiab020⟩
Article dans une revue hal-03331757v1

DNA demethylases remodel DNA methylation in rice gametes and zygote and are required for reproduction

Shaoli Zhou , Xue Li , Qian Liu , Yu Zhao , Wei Jiang
Molecular Plant, 2021, 14 (9), pp.1569-1583. ⟨10.1016/j.molp.2021.06.006⟩
Article dans une revue hal-04451965v1

Parental variation in CHG methylation is associated with allelic-specific expression in elite hybrid rice

Xuan Ma , Feng Xing , Qingxiao Jia , Qinglu Zhang , Tong Hu
Plant Physiology, 2021, 186 (2), pp.1025-1041. ⟨10.1093/plphys/kiab088⟩
Article dans une revue hal-04451991v1

Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice

Farhan Ullah , Qiutao Xu , Yu Zhao , Zhou D
Journal of Integrative Plant Biology, 2021, 63 (3), pp.451-467. ⟨10.1111/jipb.13042⟩
Article dans une revue hal-04452044v1

Histone deacetylases control lysine acetylation of ribosomal proteins in rice

Qiutao Xu , Qian Liu , Zhengting Chen , Yaping Yue , Yuan Liu
Nucleic Acids Research, 2021, 49 (8), pp.4613-4628. ⟨10.1093/nar/gkab244⟩
Article dans une revue hal-04452035v1

Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice

Farhan Ullah , Qiutao Xu , Yu Zhao , Dao-Xiu Zhou
Journal of Integrative Plant Biology, 2021, 63 (3), pp.451-467. ⟨10.1111/jipb.13042⟩
Article dans une revue hal-03334109v1

SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis

Wentao Wang , Yue Lu , Junjie Li , Xinran Zhang , Fangfang Hu
The Plant cell, 2021, 33 (12), pp.3721-3742. ⟨10.1093/plcell/koab224⟩
Article dans une revue hal-04451982v1

Understanding epigenomics based on the rice model

Yue M. Lu , Dao-Xiu Zhou , Yu Zhao
TAG Theoretical and Applied Genetics, 2020, 133 (5), pp.1345-1363. ⟨10.1007/s00122-019-03518-7⟩
Article dans une revue hal-02895050v1

Distribution pattern of histone marks potentially determines their roles in transcription and RNA processing in rice

Yongfeng Hu , Yan Lai , Xiangsong Chen , Dao-Xiu Zhou , Yu Zhao
Journal of Plant Physiology, 2020, 249, pp.153167. ⟨10.1016/j.jplph.2020.153167⟩
Article dans une revue hal-03218009v1

A Chromodomain-Helicase-DNA-Binding Factor Functions in Chromatin Modification and Gene Regulation

Yue Lu , Feng Tan , Yu Zhao , Shaoli Zhou , Xiangsong Chen
Plant Physiology, 2020, 183 (3), pp.1035-1046. ⟨10.1104/pp.20.00453⟩
Article dans une revue hal-03218052v1

Histone Deacetylase HDA9 and WRKY53 Transcription Factor Are Mutual Antagonists in Regulation of Plant Stress Response

Yu Zheng , Jingyu Ge , Chun Bao , Wenwen Chang , Jingjing Liu
Molecular Plant, 2020, 13 (4), pp.598-611. ⟨10.1016/j.molp.2019.12.011⟩
Article dans une revue hal-03217213v1

A Chromodomain-Helicase-DNA-Binding Factor Functions in Chromatin Modification and Gene Regulation

Yue Lu , Feng Tan , Yu Zhao , Shaoli Zhou , Xiangsong Chen
Plant Physiology, 2020, 183 (3), pp.1035-1046. ⟨10.1104/pp.20.00453⟩
Article dans une revue hal-04452048v1

Histone Deacetylase HDA9 and WRKY53 Transcription Factor Are Mutual Antagonists in Regulation of Plant Stress Response

Yu Zheng , Jingyu Ge , Chun Bao , Wenwen Chang , Jingjing Liu
Molecular Plant, 2020, 13 (4), pp.598-611. ⟨10.1016/j.molp.2019.12.011⟩
Article dans une revue hal-04451980v1

Single-cell three-dimensional genome structures of rice gametes and unicellular zygotes

Shaoli Zhou , Wei Jiang , Yu Zhao , Dao-Xiu Zhou
Nature Plants, 2019, 5 (8), pp.795-800. ⟨10.1038/s41477-019-0471-3⟩
Article dans une revue hal-04451971v1

Arabidopsis histone deacetylase HDA15 directly represses plant response to elevated ambient temperature

Yuan Shen , Tingting Lei , Xiaoyun Cui , Xiaoyun Liu , Shaoli Zhou
Plant Journal, 2019, 100 (5), pp.991-1006. ⟨10.1111/tpj.14492⟩
Article dans une revue hal-03060206v1

Arabidopsis histone deacetylase HDA 15 directly represses plant response to elevated ambient temperature

Yuan Shen , Tingting Lei , Xiaoyun Cui , Xiaoyun Liu , Shaoli Zhou
Plant Journal, 2019, 100 (5), pp.991-1006. ⟨10.1111/tpj.14492⟩
Article dans une revue hal-04452052v1

Single-cell three-dimensional genome structures of rice gametes and unicellular zygotes

Shaoli Zhou , Wei Jiang , Yu Zhao , Dao-Xiu Zhou
Nature Plants, 2019, 5, pp.795-800. ⟨10.1038/s41477-019-0471-3⟩
Article dans une revue hal-02626291v1
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Histone acetylation dynamics integrates metabolic activity to regulate plant response to stress

Yongfeng Hu , Yue Lu , Yu Zhao , Dao-Xiu Zhou
Frontiers in Plant Science, 2019, 10, pp.1236. ⟨10.3389/fpls.2019.01236⟩
Article dans une revue hal-02619691v1

Regulation of FUSCA3 Expression During Seed Development in Arabidopsis

Thomas James Roscoe , Virginie Vaissayre , Gaël Paszkiewicz , Fernando Clavijo , Zsolt Kelemen
Plant and Cell Physiology, 2019, 60 (2), pp.476-487. ⟨10.1093/pcp/pcy224⟩
Article dans une revue hal-02386031v1

Identification and analysis of adenine N-6-methylation sites in the rice genome

Chao Zhou , Changshi Wang , Hongbo Liu , Qiangwei Zhou , Qian Liu
Nature Plants, 2018, 4, pp.554-563. ⟨10.1038/s41477-018-0214-x⟩
Article dans une revue hal-02626450v1

WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice

Saifeng Cheng , Feng Tan , Yue Lu , Xiaoyun Liu , Tiantian Li
Nucleic Acids Research, 2018, 46 (5), pp.2356-2369. ⟨10.1093/nar/gky017⟩
Article dans une revue hal-04451937v1

DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin

Feng Tan , Yue Lu , Wei Jiang , Tian Wu , Ruoyu Zhang
Plant Physiology, 2018, 177 (3), pp.1187-1197. ⟨10.1104/pp.18.00352⟩
Article dans une revue hal-02625680v1

Identification and analysis of adenine N6-methylation sites in the rice genome

Chao Zhou , Changshi Wang , Hongbo Liu , Qiangwei Zhou , Qian Liu
Nature Plants, 2018, 4 (8), pp.554-563. ⟨10.1038/s41477-018-0214-x⟩
Article dans une revue hal-04451953v1

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

Yue Lu , Qiutao Xu , Yuan Liu , Yue Yu , Zhong-Yi Cheng
Genome Biology, 2018, 19 (1), pp.144. ⟨10.1186/s13059-018-1533-y⟩
Article dans une revue hal-04452059v1

Dynamic and spatial restriction of Polycomb activity by plant histone demethylases

Wenhao Yan , Dijun Chen , Cezary Smaczniak , Julia Engelhorn , Haiyang Liu
Nature Plants, 2018, 4 (9), pp.681-689. ⟨10.1038/s41477-018-0219-5⟩
Article dans une revue hal-01959671v1
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WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice

Saifeng Cheng , Feng Tan , Yue Lu , Xiaoyun Liu , Tiantian Li
Nucleic Acids Research, 2018, 46 (5), pp.2356-2369. ⟨10.1093/nar/gky017⟩
Article dans une revue hal-02620947v1
Image document

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence

Yue Lu , Qiutao Xu , Yuan Liu , Yue Yu , Zhong-Yi Cheng
Genome Biology, 2018, 19, pp.144. ⟨10.1186/s13059-018-1533-y⟩
Article dans une revue hal-02623687v1

Rice homeodomain protein WOX11 recruits a histone acetyltransferase complex to establish programs of cell proliferation of crown root meristem

Shaoli Zhou , Wei Jiang , Fei Long , Saifeng Cheng , Wenjing Yang
The Plant cell, 2017, 29 (5), pp.1088-1104. ⟨10.1105/tpc.16.00908⟩
Article dans une revue hal-01605436v1
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Rice NAD(+)-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes

Hua Zhang , Yu Zhao , Dao-Xiu Zhou
Nucleic Acids Research, 2017, 45 (21), pp.12241-12255. ⟨10.1093/nar/gkx825⟩
Article dans une revue hal-02629084v1

Histone deacetylase AtSRT1 links metabolic flux and stress response in Arabidopsis

Xiaoyun Liu , Wei Wei , Wenjun Zhu , Lufang Su , Zeyang Xiong
Molecular Plant, 2017, 10 (12), pp.1510-1522. ⟨10.1016/j.molp.2017.10.010⟩
Article dans une revue hal-02622107v1

Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis

Xiaoyun Liu , Wei Wei , Wenjun Zhu , Lufang Su , Zeyang Xiong
Molecular Plant, 2017, 10 (12), pp.1510-1522. ⟨10.1016/j.molp.2017.10.010⟩
Article dans une revue hal-04451959v1

Analysis of chromatin regulators reveals specific features of rice DNA methylation pathways

Feng Tan , Chao Zhou , Qiangwei Zhou , Shaoli Zhou , Wenjing Yang
Plant Physiology, 2016, 171 (3), pp.2041-2054. ⟨10.1104/pp.16.00393⟩
Article dans une revue hal-02636695v1

Chromodomain, Helicase and DNA-binding CHD1 protein, CHR5, are involved in establishing active chromatin state of seed maturation genes

Yuan Shen , Martine Devic , Loic L. Lepiniec , Dao-Xiu Zhou
Plant Biotechnology Journal, 2015, 13 (6), pp.811 - 820. ⟨10.1111/pbi.12315⟩
Article dans une revue hal-02633217v1
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Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis

Yuan Shen , Natalia Conde e Silva , Laure Audonnet , Caroline Servet , Wei Wei
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00290⟩
Article dans une revue hal-04336768v1

The Role of Histone Methylation and H2A.Z Occupancy during Rapid Activation of Ethylene Responsive Genes

Yongfeng Hu , Yuan Shen , Natalia Conde e Silva , Dao-Xiu Zhou
PLoS ONE, 2011, 6 (11), pp.e28224. ⟨10.1371/journal.pone.0028224⟩
Article dans une revue hal-04336767v1

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

Caroline Servet , Natalia Conde e Silva , Dao-Xiu Zhou
Molecular Plant, 2010, 3 (4), pp.670-677. ⟨10.1093/mp/ssq018⟩
Article dans une revue hal-04336756v1
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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5

Moussa Benhamed , Marie-Laure Martin-Magniette , Ludivine Taconnat , Frederique Bitton , Caroline Servet
Plant Journal, 2008, 56 (3), pp.493-504. ⟨10.1111/j.1365-313X.2008.03606.x⟩
Article dans une revue hal-02659090v1
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Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth

Claire Bertrand , Moussa Benhamed , You-Fang Li , Mira Ayadi , Gaetan G. Lemonnier
Journal of Biological Chemistry, 2005, 280 (2), pp.1465-1473. ⟨10.1074/jbc.M409000200⟩
Article dans une revue hal-02675476v1