David Legland

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Publications

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A decision tree for designing bioimage analysis pipelines

Elnaz Fazeli , Robert Haase , Michael Doube , Kota Miura , David Legland

GloBIAS Conference 2025 Kobe, Oct 2025, Kobe, Japan. 2025

Poster de conférence hal-05326537v1

Filling the gaps between scales to understand biomass properties

P. Assemat , Cecile Barron , Mirjam Czjzek , Paul Duru , Fabienne Guillon et al.

International Conference on Plant Cell Wall Biology, Jul 2025, Vancouver, Canada. 2025

Poster de conférence hal-05323775v1
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Run-Length based mathematical morphology for processing of large 3D images of wheat grains. Image To Knowledge, Milan (IT): 2024/10/23-25.

David Legland , Anne-Laure Chateigner-Boutin , Christine Girousse

From Images To Knowledge (I2K), Oct 2024, Milan (Italie), Italy

Poster de conférence hal-04848632v1
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Magnetic resonance imaging of node and internode in maize stalk

Catherine Deborde , Ali Boulgsoa , Marie-Françoise Devaux , Fabienne Guillon , David Legland et al.

4th INTERNATIONAL PLANT SPECTROSCOPY CONFERENCE, Sep 2024, Vienna (AUSTRIA), Austria.

Poster de conférence hal-04718891v1

Using darkfield and fluorescence macrovision on large images to assess anatomical and chemical variability of tissues in whole cross sections of maize stems

Marie Berger , M.F. Devaux , David Legland , Cécile Barron , Benoit Delord et al.

7th International Conference on Plant Cell Wall Biology, Jul 2021, Online, Japan

Poster de conférence hal-04151726v1

Apports de la microtomographie à rayons X et de l’analyse d’images pour l’étude de la croissance et la morphologie du grain de blé en développement

Duong Quoc Thang Le , Camille Alvarado , Eric Badel , Christine Girousse , Fabienne Guillon et al.

Colloque GRAINES 2019, May 2019, Angers, France. Réseau Français de Biologie des Graines, 2019

Poster de conférence hal-02093374v1

Shape modeling of wheat grain through its development

Duong Quoc Thang Le , Christine Girousse , David Legland , Anne Laure Chateigner-Boutin

7. International Workshop on Image Analysis Methods in the Plant Sciences, Jul 2019, Lyon, France. , 2019

Poster de conférence hal-02733958v1

Multispectral image analysis of series of large images of plant sections

Marie Francoise Devaux , Cecile Barron , Mathias Corcel , David Legland , Fabienne Guillon

International Workshop on Image Analysis Methods for the Plant Sciences, Jan 2018, Nottingham, United Kingdom. , 2018

Poster de conférence hal-02154432v1
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Histologie, dégradabilité de la biomasse lignocellulosique et tolérance des plantes à un manque d'eau.

Valérie Méchin , Fadi El El Hage , Marion Forest , David Legland , Yu Zhang et al.

11es Journées du Réseau Français des parois, Jun 2017, Orléans, France. 2017

Poster de conférence hal-02955001v1

Pepsin diffusion in dairy gels depends on casein concentration and microstructure

Jonathan Thevenot , Chantal Cauty , David Legland , Didier Dupont , Juliane Floury

5. International Conference on Food Digestion, Apr 2017, Rennes, France. , 2017

Poster de conférence hal-01552153v1

Méthodes FRAP/CRYO-FIXATION-MET-MEB pour relier la diffusion de la pepsine à la microstructure des gels laitiers.

Jonathan Thevenot , Chantal Cauty , David Legland , Didier Dupont , Juliane Floury

Analyse d’image et nouvelles techniques D’imageries spécifiques» 15. journées de formation du RCCM, Jun 2016, Saint Etienne, France. , 2016

Poster de conférence hal-01322854v1

Diffusion of solutes in dairy systems as affected by system microstructure and physicochemical characteristics of solutes

Juliana Valle Costa Silva , David Legland , Chantal Cauty , I. Kolotuev , Stéphane Pezennec et al.

9. NIZO Dairy Conference Milk Protein Functionality, Sep 2015, Papendal, Netherlands. , 2015

Poster de conférence hal-01454560v1

Diffusion in model cheeses as affected by matrix microstructure and properties of solutes

Juliana Valle Costa Silva , Chantal Cauty , David Legland , Sylvie Lortal , Juliane Floury

2. IDF Symposium on the Microstructure of Dairy Products, Mar 2014, Melbourne, Australia. , 2014

Poster de conférence hal-01189902v1
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MatGeom: A toolbox for geometry processing with MATLAB.

David Legland

SoftwareX, 2025, 29, pp.101984. ⟨10.1016/j.softx.2024.101984⟩

Article dans une revue hal-04850432v1
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From cells to pixels: A decision tree for designing bioimage analysis pipelines

Elnaz Fazeli , Robert Haase , Michael Doube , Kota Miura , David Legland

Journal of Microscopy, 2025, pp.2025;1-25. ⟨10.1111/jmi.70021⟩

Article dans une revue hal-05358078v1
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New Growth-Related Features of Wheat Grain Pericarp Revealed by Synchrotron-Based X-ray Micro-Tomography and 3D Reconstruction

David Legland , Thang Duong Quoc Le , Camille Alvarado , Christine Girousse , Anne-Laure Chateigner-Boutin

Plants, 2023, 12 (5), pp.1038. ⟨10.3390/plants12051038⟩

Article dans une revue hal-04056508v1
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Measurement of microfibril angle in plant fibres : Comparison between X-ray diffraction, second harmonic generation and transmission ellipsometry microscopies

Emmanuelle Richely , Ali Zarei , Alessia Melelli , Dhanesh Kattipparambil Rajan , Jason Govilas et al.

Composites Part C: Open Access, 2023, 11, pp.100355 (14). ⟨10.1016/j.jcomc.2023.100355⟩

Article dans une revue hal-04224358v1
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Synchrotron Based X-ray Microtomography Reveals Cellular Morphological Features of Developing Wheat Grain

David Legland , Camille Alvarado , Eric Badel , Fabienne Guillon , Andrew King et al.

Applied Sciences, 2022, 12 (7), pp.3454. ⟨10.3390/app12073454⟩

Article dans une revue hal-03622545v1
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A Hitchhiker's guide through the bio‐image analysis software universe

Robert Haase , Elnaz Fazeli , David Legland , Michael Doube , Siân Culley et al.

FEBS Letters, 2022, 596 (19), pp.2472-2485. ⟨10.1002/1873-3468.14451⟩

Article dans une revue (article de synthèse) hal-03757709v1
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Brain virtual histology with X-ray phase-contrast tomography Part II: 3D morphologies of amyloid-β plaques in Alzheimer’s disease models

Matthieu Chourrout , Margaux Roux , Carlie Boisvert , Coralie Gislard , David Legland et al.

Biomedical optics express, 2022, 13 (3), pp.1640-1653. ⟨10.1364/BOE.438890⟩

Article dans une revue hal-03451419v2

Spatial correlation of water distribution and fine structure of arabinoxylans in the developing wheat grain

Mathieu Fanuel , Florent Grélard , Loïc Foucat , Camille Alvarado , Bastien Arnaud et al.

Carbohydrate Polymers, 2022, 294, pp.119738. ⟨10.1016/j.carbpol.2022.119738⟩

Article dans une revue hal-03736294v1
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Esmraldi: efficient methods for the fusion of mass spectrometry and magnetic resonance images

Florent Grélard , David Legland , Mathieu Fanuel , Bastien Arnaud , Loïc Foucat et al.

BMC Bioinformatics, 2021, 22 (1), pp.1-17. ⟨10.1186/s12859-020-03954-z⟩

Article dans une revue hal-03150157v1
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Darkfield and Fluorescence Macrovision of a Series of Large Images to Assess Anatomical and Chemical Tissue Variability in Whole Cross-Sections of Maize Stems

Marie Berger , M.F. Devaux , David Legland , Cécile Barron , Benoit Delord et al.

Frontiers in Plant Science, 2021, 12, 22 p. ⟨10.3389/fpls.2021.792981⟩

Article dans une revue hal-03528905v1
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Microfibril angle of elementary flax fibres investigated with polarised second harmonic generation microscopy

Alessia Melelli , Frédéric Jamme , David Legland , Johnny Beaugrand , Alain Bourmaud

Industrial Crops and Products, 2020, 156, pp.112847. ⟨10.1016/j.indcrop.2020.112847⟩

Article dans une revue hal-03128201v1
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Parametric mapping of cellular morphology in plant tissue sections by gray level granulometry

David Legland , Fabienne Guillon , Marie-Francoise Devaux

Plant Methods, 2020, 16 (1), ⟨10.1186/s13007-020-00603-7⟩

Article dans une revue (article de synthèse) hal-02918124v1
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Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development

Duong Quoc Thang Le , Camille Alvarado , Christine Girousse , David Legland , Anne Laure Chateigner-Boutin

Plant Methods, 2019, 15 (1), pp.1-19. ⟨10.1186/s13007-019-0468-y⟩

Article dans une revue hal-02619011v1
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Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos

Julien Moukhtar , Alain Trubuil , Katia Belcram , David Legland , Zhor Khadir et al.

PLoS Computational Biology, 2019, 15 (2), pp.e1006771. ⟨10.1371/journal.pcbi.1006771⟩

Article dans une revue hal-02393309v1
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Changes in cell walls lignification, feruloylation and p-coumaroylation throughout maize internode development

Yu Y. Zhang , David Legland , Fadi El Hage , Marie Francoise Devaux , Fabienne Guillon et al.

PLoS ONE, 2019, 14 (7), pp.1-21. ⟨10.1371/journal.pone.0219923⟩

Article dans une revue hal-02619681v1
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Beating of hemp bast fibres: an examination of a hydro-mechanical treatment on chemical, structural, and nanomechanical property evolutions

Justine Padovani , David Legland , Miguel Pernes , Antoine Gallos , Céline Thomachot-Schneider et al.

Cellulose, 2019, 26 (9), pp.5665-5683. ⟨10.1007/s10570-019-02456-3⟩

Article dans une revue hal-02627443v1
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Quantitative dissection of variations in root growth rate

Chvan Youssef , François Bizet , Renaud Bastien , David Legland , Marie-Béatrice Bogeat-Triboulot et al.

Journal of Experimental Botany, 2018, 69 (21), pp.5157-5168. ⟨10.1093/jxb/ery272⟩

Article dans une revue hal-02621828v1
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Quantitative imaging of plants: multi-scale data for better plant anatomy

David Legland , Marie Francoise Devaux , Fabienne Guillon

Journal of Experimental Botany, 2018, 69 (3), pp.343-347. ⟨10.1093/jxb/erx416⟩

Article dans une revue hal-02625043v1

Tissue lignification, cell wall <em>p</em>-coumaroylation and degradability of maize stems depend on water status

Fadi El Hage , David Legland , Néro Borrega , Marie-Pierre Jacquemot , Yves Griveau et al.

Journal of Agricultural and Food Chemistry, 2018, 66 (19), pp.4800-4808. ⟨10.1021/acs.jafc.7b05755⟩

Article dans une revue hal-02621279v1
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Impact of Two-Dimensional Particle Size Distribution on Estimation of Water Vapor Diffusivity in Micrometric Size Cellulose Particles

Valentin Thoury-Monbrun , Helene Angellier-Coussy , Valérie Guillard , David Legland , Sebastien Gaucel

Materials, 2018, 11 (9), pp.1712. ⟨10.3390/ma11091712⟩

Article dans une revue hal-01918042v1

Microstructural and Chemical Approach To Highlight How a Simple Methyl Group Affects the Mechanical Properties of a Natural Fibers Composite

Antoine Gallos , Gabriel Paës , David Legland , Johnny Beaugrand , Florent Allais

ACS Sustainable Chemistry & Engineering, 2017, 5 (11), pp.10352-10360. ⟨10.1021/acssuschemeng.7b02399⟩

Article dans une revue hal-02629208v1
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Histological quantification of maize stem sections from FASGA-stained images

David Legland , Fadi El-Hage , Valérie Méchin , Matthieu Reymond

Plant Methods, 2017, 13, pp.1-11. ⟨10.1186/s13007-017-0225-z⟩

Article dans une revue hal-02627257v1

The preprophase band of microtubules controls the robustness of division orientation in plants

Estelle Schaefer , Katia Belcram , Magalie Uyttewaal , Yann Duroc , Magali Goussot et al.

Science, 2017, 356 (6334), pp.186-189. ⟨10.1126/science.aal3016⟩

Article dans une revue hal-01606017v1

Pepsin diffusion in dairy gels depends on casein concentration and microstructure

Jonathan Thevenot , Chantal Cauty , David Legland , Didier Dupont , Juliane Floury

Food Chemistry, 2017, 223, pp.54-61. ⟨10.1016/j.foodchem.2016.12.014⟩

Article dans une revue hal-01426768v1

Exploring the mechanical performance and in-planta architecture of secondary hemp fibres

Alain Bourmaud , Jérome Malvestio , Nicolas Lenoir , David Siniscalco , Anouck Habrant et al.

Industrial Crops and Products, 2017, 108, pp.1-5. ⟨10.1016/j.indcrop.2017.06.010⟩

Article dans une revue istex hal-01697271v1

Exploring the microstructure of natural fibre composites by confocal Raman imaging and image analysis

Antoine Gallos , Gabriel Paës , David Legland , Florent Allais , Johnny Beaugrand

Composites Part A: Applied Science and Manufacturing, 2017, 94, pp.32-40. ⟨10.1016/j.compositesa.2016.12.005⟩

Article dans une revue hal-01607502v1

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

David Legland , Ignacio Arganda Carreras , Philippe Andrey

Bioinformatics, 2016, 32 (22), pp.3532-3534. ⟨10.1093/bioinformatics/btw413⟩

Article dans une revue hal-01438611v1

KymoRod: a method for automated kinematic analysis of rod-shaped plant organs

Renaud Bastien , David Legland , Marjolaine Martin , Lucien Fregosi , Alexis Peaucelle et al.

The Plant Journal, 2016, 88 (3), pp.468-475. ⟨10.1111/tpj.13255⟩

Article dans une revue hal-01417736v1
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Characterization of the microstructure of dairy systems using automated image analysis

Juliana V.C. Silva , David Legland , Chantal Cauty , Irina Kolotuev , Juliane Floury

Food Hydrocolloids, 2015, 44, pp.360-371. ⟨10.1016/j.foodhyd.2014.09.028⟩

Article dans une revue hal-01130408v1

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei

Axel Poulet , Ignacio Arganda-Carreras , David Legland , Aline V. Probst , Philippe Andrey et al.

Bioinformatics, 2015, 31 (7), pp.1144 - 1146. ⟨10.1093/bioinformatics/btu774⟩

Article dans une revue hal-01920000v1
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Statistical mapping of maize bundle intensity at the stem scale using spatial normalisation of replicated images

David Legland , Marie Francoise Devaux , Fabienne Guillon

PLoS ONE, 2014, 9 (3), ⟨10.1371/journal.pone.0090673⟩

Article dans une revue hal-01195472v1

Structural mechanisms leading to improved water retention in acid milk gels by use of transglutaminase

Dilek D. Ercili-Cura , Martina M. Lille , David Legland , Sebastien S. Gaucel , Kaisa K. Poutanen et al.

Food Hydrocolloids, 2013, 30 (1), pp.419 - 427. ⟨10.1016/j.foodhyd.2012.07.008⟩

Article dans une revue istex hal-01004522v1

Color Quantification of Stained Maize Stem Section Describes Lignin Spatial Distribution within the Whole Stem

Yu Y. Zhang , Sylvain S. Legay , Yves Y. Barrière , Valérie Méchin , David Legland

Journal of Agricultural and Food Chemistry, 2013, 61 (13), pp.3186 - 3192. ⟨10.1021/jf400912s⟩

Article dans une revue hal-01001079v1

Automated clustering of lignocellulosic fibres based on morphometric features and using clustering of variables

David Legland , Johnny Beaugrand

Industrial Crops and Products, 2013, 45, pp.253 - 261. ⟨10.1016/j.indcrop.2012.12.021⟩

Article dans une revue istex hal-01001582v1

Cartography of cell morphology in tomato pericarp at the fruit scale

David Legland , Marie Francoise M. F. Devaux , Brigitte B. Bouchet , Fabienne Guillon , Marc Lahaye

Journal of Microscopy, 2012, 247 (1), pp.78 - 93. ⟨10.1111/j.1365-2818.2012.03623.x⟩

Article dans une revue istex hal-01004169v1

Changing the isoelectric point of the heat-induced whey protein complexes affects the acid gelation of skim milk

Marion Morand , Fanny Guyomarc'H , David Legland , Marie-Hélène Famelart

International Dairy Journal, 2012, 23 (1), pp.9-17. ⟨10.1016/j.idairyj.2011.10.006⟩

Article dans une revue hal-01189599v1

Stereological estimation of cell wall density of DR12 tomato mutant using three-dimensional confocal imaging

David Legland , Fabienne Guillon , Kiên Kiêu , Brigitte Bouchet , Marie Francoise Devaux

Annals of Botany, 2010, 105 (2), pp.265-276. ⟨10.1093/aob/mcp283⟩

Article dans une revue hal-01195433v1
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Détection semi-automatique de cellules de fruits charnus observés par microscopie confocale 2D et 3D

David Legland , Marie-Françoise Devaux

Cahier des Techniques de l'INRA, 2009, N° Spécial: Imagerie, pp.7-16

Article dans une revue hal-01195434v1

Stereological estimation for layered structures based on slabs perpendicular to a surface

David Legland , Marie Francoise M. F. Devaux , Kiên Kiêu , Brigitte B. Bouchet

Journal of Microscopy, 2008, 232 (1), pp.44-55. ⟨10.1111/j.1365-2818.2008.02080.x⟩

Article dans une revue hal-02662091v1

Macro-vision and grey level granulometry for quantification of tomato pericarp structure

Marie Francoise M. F. Devaux , Brigitte B. Bouchet , David Legland , Fabienne Guillon , Marc Lahaye

Postharvest Biology and Technology, 2008, 47 (2), pp.199-209. ⟨10.1016/j.postharvbio.2007.06.017⟩

Article dans une revue istex hal-02666707v1
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Computation of Minkowski measures on 2D and 3D binary images

David Legland , Kiên Kiêu , Marie Francoise M. F. Devaux

Image Analysis & Stereology, 2007, 26, pp.83-92. ⟨10.5566/ias.v26.p83-92⟩

Article dans une revue hal-02664450v1

Multi-modal and multi-scale analysis of the parietal structure of plant biomass for a better understanding of its degradability

Oriane Morel , Mathieu Fanuel , David Legland , Hélène Rogniaux , Angélina D'Orlando

19ème Colloque de la Société Française des Microscopies, Société française de Microscopies, Jun 2025, Toulouse, France

Communication dans un congrès hal-05190248v1
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Analyse d’images et modélisation pour la morphologie de tissus végétaux

David Legland , T.D.Q. Le , Anne-Laure Chateigner-Boutin , Christine Girousse

37ème congrès Association Française d’Histotechnologie, Association Française d’Histotechnologie, Jun 2024, Saint-Malo, France

Communication dans un congrès hal-04849966v1

Using darkfield and fluorescence macrovision on large images to assess anatomical and chemical variability of tissues in whole cross sections of maize stems

Marie Berger , M.F. Devaux , David Legland , Cécile Barron , Benoit Delord et al.

13th International Conference on Agrophysics : Agriculture in changing climate, Nov 2021, Lublin, Poland

Communication dans un congrès hal-04151754v1

Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development

Thang Duong Quoc Le , Camille Alvarado , Christine Girousse , David Legland , Anne Laure Chateigner-Boutin

3. NEUBIAS Conference, Feb 2019, Luxembourg, France

Communication dans un congrès hal-02289525v1

Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development

Thang Duong Quoc Le , Camille Alvarado , Christine Girousse , David Legland , Anne Laure Chateigner-Boutin

Quantitative Bioimaging Conference, Jan 2019, Rennes, France

Communication dans un congrès hal-02289529v1

Deciphering cell division patterns in plant early embryogenesis by combining 3D image analysis and computer modelling

Elise Laruelle , Julien Moukhtar , Alain Trubuil , Katia Belcram , David Legland et al.

Plant Growth and Form: International Symposium on Quantitative Plant Morphodynamics, Sep 2019, Heidelberg, Germany

Communication dans un congrès hal-02786917v1

Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis

Julien Moukhtar El Demerdache , Elise Laruelle , Alain Trubuil , Katia Belcram , David Legland et al.

Quantitative BioImaging Conference, Jan 2019, Rennes, France

Communication dans un congrès hal-02791564v1

Shape modeling of wheat grain through its development

Duong Quoc Thang Le , Christine Girousse , David Legland , Anne Laure Chateigner-Boutin

7. International Workshop on Image Analysis Methods for the Plant Sciences, Université Lumière (Lyon 2) (UL2). FRA., Jul 2019, Lyon, France. 55 p

Communication dans un congrès hal-02733869v1

Pepsin diffusion in dairy gels depends on casein concentration and microstructure

Jonathan Thevenot , Chantal Cauty , David Legland , Didier Dupont , Juliane Floury

9. Imaging The Cell 2017, Jun 2017, Rennes, France

Communication dans un congrès hal-01527686v1
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Partage de pratiques et outils pour le calcul scientifique

Marie-Josée Cros , Claire Chabanet , Fabrice Dessaint , David Legland , Serguei Sokol et al.

Journées Math-Info de l'INRA, Oct 2016, Mallemort, France

Communication dans un congrès hal-01886412v1

Computational modelling of cell division patterns during plant early embryogenesis

Julien Moukhtar , Katia Belcram , Alain Trubuil , David Legland , Jean-Christophe Palauqui et al.

International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium

Communication dans un congrès hal-02795769v1

De l’image numérique à la donnée scientifique: Qu’est-ce qu’une image numérique?

Marie Weiss , Marie Francoise M. F. Devaux , P. Andrey , David Legland

Ecole Image INRA: De l'image numérique à la donnée scientifique : quelles démarches d'analyse et de traitement d'images ?, 2014, Lyon, France

Communication dans un congrès hal-01336199v1
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Image analysis of cheese microstructure and diffusion properties of solutes: An important link to understand cheese ripening mechanisms

Juliana Valle Costa Silva , Chantal Cauty , David Legland , Sylvie Lortal , Juliane Floury

DREAM Project International Conference, Institut National de Recherche Agronomique (INRA). UAR Département Caractérisation et Elaboration des Produits Issus de l'Agriculture (1008)., Jun 2013, Nantes, France

Communication dans un congrès hal-01189705v1
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Cartography of tomato pericarp cellular morphology at the fruit scale

David Legland , Marie Francoise Devaux , Brigitte Bouchet , Fabienne Guillon , Marc Lahaye

Insidefood Symposium 2013, Apr 2013, Leuven, Belgium

Communication dans un congrès hal-01204126v1

Power of Imaging in the Study of Lignocellulosic Biomass Tissues

Valérie Méchin , Matthieu Reymond , David Legland , Fadi El Hage , Aurelie Baldy et al.

Green Chemistry and Agro-food Industry: Towards a Sustainable Bioeconomy, Springer Nature Switzerland, pp.401-432, 2024, ⟨10.1007/978-3-031-54188-9_16⟩

Chapitre d'ouvrage hal-05163983v1

A New Similarity Metric for Deformable Registration of MALDI–MS and MRI Images

Florent Grélard , Michael Tuck , Elise Cosenza , David Legland , Marléne Durand et al.

Medical Image Understanding and Analysis, 14122, Springer Nature Switzerland, pp.171-181, 2024, Lecture Notes in Computer Science, 978-3-031-48593-0. ⟨10.1007/978-3-031-48593-0_13⟩

Chapitre d'ouvrage hal-04660376v1

Puissance de l’imagerie dans l’étude des tissus de la biomasse lignocellulosique.

Valérie Méchin , Matthieu Reymond , David Legland , Fadi El Hage , Aurélie Baldy et al.

Chimie verte et industries agroalimentaires. Vers une bioéconomie durable,, 2020

Chapitre d'ouvrage hal-02954859v1

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