DV
David Vallenet
58%
Libre accès
110
Documents
Affiliations actuelles
- 427676
Identifiants chercheurs
- david-vallenet
- 0000-0001-6648-0332
- IdRef : 114897573
- Google Scholar : https://scholar.google.fr/citations?user=rJNPLSAAAAAJ
Présentation
Domaines de recherche
Génomique, Transcriptomique et Protéomique [q-bio.GN]
Bio-Informatique, Biologie Systémique [q-bio.QM]
Bactériologie
Sciences du Vivant [q-bio]
Compétences
Publications
The MicroScope platform: 20 years of expertise in microbial genomicsThe 20th MicroScope anniversary, Alexandra Calteau; David Vallenet, Sep 2023, Evry-Courcouronnes, France
Communication dans un congrès
hal-04370626v1
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PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesThe local pangenome, Oct 2023, Alicante, Spain
Communication dans un congrès
hal-04371302v1
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Diverse Amine dehydrogenases for the biocatalytic synthesis of aminesENZYNOV'2, Oct 2023, Paris-Romainville, France
Communication dans un congrès
hal-04327765v1
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PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomesThe local pangenome, Oct 2023, Alicante, Spain
Communication dans un congrès
hal-04371316v1
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PANORAMA: comparative pangenomics tools to explore interspecies diversity of microbial genomesISMB/ECCB 2023, ISCB ECCB, Jul 2023, Lyon, France
Communication dans un congrès
hal-04371284v1
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Expanding the portfolio of native Amine Dehydrogenases by extensive biodiversity screeningBioTrans 2023, Jun 2023, La Rochelle, France
Communication dans un congrès
hal-04327737v1
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Expanding the portfolio of enzymes for biocatalysis by extensive biodiversity screening6e Symposium International de l'AFERP, Jul 2023, Orsay - Paris, France
Communication dans un congrès
hal-04327790v1
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Des pangénomes des microorganismes aux microbiotesLes pangénomes, mise à jour et exploitation en agriculture, Académie d'Agriculture de France, Apr 2022, Paris, France
Communication dans un congrès
hal-04360283v1
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Metagenomic expansion and active site analysis of the Amine Dehydrogenase familyInternational Congress on Biocatalysis 2022, Aug 2022, Hamburg, Germany
Communication dans un congrès
hal-04360123v1
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Expanding the portfolio of native Amine Dehydrogenases by extensive biodiversity screeningAmine BioCat 5.0, Nov 2022, Groningen, Netherlands
Communication dans un congrès
hal-04328280v1
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MODAMDH: identification of diverse Amine Dehydrogenases by screening biodiversity using sequence and structure-based approaches29th Conference on Intelligent Systems for Molecular Biology (ISMB) - 20th European Conference on Computational Biology (ECCB), Jul 2021, Virtual conference, United States
Communication dans un congrès
hal-04359840v1
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panRGP: a pangenome-based method to predict genomic islands and explore their diversityJOBIM 2021 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris (virtual), France
Communication dans un congrès
hal-04360257v1
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Large scale exploration of the biocatalytic capability of biodiversity for biocatalysis & synthetic biology applicationsFirst International symposium on High-Throughput Catalysts Design, Jun 2021, Virtual conference (Lille), France
Communication dans un congrès
hal-04315412v1
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MODAMDH: identification of diverse Amine Dehydrogenases by screening biodiversity using innovative in silico approachesInternational Symposium on High-Throughput Catalyst Design, Jun 2021, Lille (Virtual), France
Communication dans un congrès
hal-04328578v1
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panRGP: a pangenome-based method to predict genomic islands and explore their diversitythe 19th European Conference on Computational Biology, ECCB 2020, Aug 2020, Barcelona (Virtual), Spain
Communication dans un congrès
hal-04360043v1
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Depicting microbial species diversity via a partitioned pangenome graphAnimation Thématique "Pan-génomique végétale", GIS Biotechnologies Vertes, Jul 2019, Paris, France
Communication dans un congrès
hal-04359803v1
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Comparative microbial pangenomics to explore mobilome dynamicsThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom
Communication dans un congrès
hal-04359455v1
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom
Communication dans un congrès
hal-04358401v1
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Exploring biodiversity for biocatalyst discovery: applications to synthetic chemistry and synthetic biologyGMGM Open Scientific day & IPCB Inauguration, May 2019, Strabourg, France
Communication dans un congrès
hal-04315453v1
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Exploration of Acinetobacter baylyi ADP1 sulfur metabolismMicroScope Open Days (MOD), Laboratory of Bioinformatics Analyses for Genomics and Metabolism, May 2018, Paris, France
Communication dans un congrès
hal-04315489v1
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Genome Mining for Enzyme Discovery: the role of bioinformatics20 ans Protéus, Sep 2018, Nîmes (France), France
Communication dans un congrès
hal-04356328v1
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome GraphJOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès
hal-04355945v1
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome GraphGenome Informatics 2018, Sep 2018, Hinxton, Cambridge, United Kingdom
Communication dans un congrès
hal-04356757v1
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Analyzing prokaryotic transcriptomics in the light of genome data with the MicroScope platformFrancis Martin; Stephane Uroz. Microbial Environmental Genomics (MEG), 2605, Springer US, pp.241-270, 2022, Methods in Molecular Biology, 978-1-0716-2871-3. ⟨10.1007/978-1-0716-2871-3_13⟩
Chapitre d'ouvrage
cea-04286744v1
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Pesticidal genes and methods of useFrance, Patent n° : WO2020183022A1. 2020
Brevet
hal-04355519v1
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NetSyn: genomic context exploration of protein families2023
Pré-publication, Document de travail
hal-04301713v1
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panModule: detecting conserved modules in the variable regions of a pangenome graph2021
Pré-publication, Document de travail
hal-04371147v1
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Rapport de conjoncture 2019 : CID 51 Modélisation mathématique, informatique et physique pour les sciences du vivantComité national de la recherche scientifique. 2020
Rapport
hal-04360199v1
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Des génomes au métabolisme des microorganismesBio-Informatique, Biologie Systémique [q-bio.QM]. Université d'Évry-Val-d'Essonne, 2020
HDR
tel-04355465v1
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