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Veronique De Berardinis

Directrice adjointe UMR Génomique Métabolique; Adjointe au Directeur du Genoscope ; Cheffe du Laboratoire de Génomique et Biochimie du Métabolisme
38
Documents
Affiliations actuelles
  • 1179766
  • 21582
Identifiants chercheurs

Domaines de recherche

Sciences du Vivant [q-bio] Biochimie, Biologie Moléculaire Génomique, Transcriptomique et Protéomique [q-bio.GN]

Publications

"marcel-salanoubat"
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Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols

Victor Laurent , Léa Gourbeyre , Alexandre Uzel , Virgil Hélaine , Lionel Nauton
ACS Catalysis, 2020, 10 (4), pp.2538-2543. ⟨10.1021/acscatal.9b05512⟩
Article dans une revue hal-02907546v1
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Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations

Sophia Belkhelfa , David Roche , Ivan Dubois , Anne Berger , Valérie A Delmas
Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.01313⟩
Article dans une revue hal-02323743v1

Exploration of Aldol Reactions Catalyzed by Stereoselective Pyruvate Aldolases with 2‐Oxobutyric Acid as Nucleophile

V. Laurent , A. Uzel , V. Helaine , L. Nauton , M. Traïkia
Advanced Synthesis and Catalysis, 2019, ⟨10.1002/adsc.201900128⟩
Article dans une revue hal-02195027v1

2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates

Domitille Chambre , Christine Guérard-Hélaine , Ekaterina Darii , Aline Mariage , Jean-Louis Petit
Chemical Communications, 2019, 55 (52), pp.7498-7501. ⟨10.1039/C9CC03361K⟩
Article dans une revue hal-02195148v1

Achiral Hydroxypyruvaldehyde Phosphate as a Platform for Multi-Aldolases Cascade Synthesis of Diuloses and for a Quadruple Acetaldehyde Addition Catalyzed by 2-Deoxyribose-5-Phosphate Aldolases

Victor Laurent , Virgil Hélaine , Carine Vergne-Vaxelaire , Lionel Nauton , Mounir Traïkia
ACS Catalysis, 2019, 9 (10), pp.9508-9512. ⟨10.1021/acscatal.9b02668⟩
Article dans une revue hal-02329545v1
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Characterization of a thermotolerant ROK-type mannofructokinase from Streptococcus mitis: application to the synthesis of phosphorylated sugars

Carine Vergne-Vaxelaire , Aline Mariage , Jean-Louis Petit , Aurélie Fossey-Jouenne , Christine Guérard-Hélaine
Applied Microbiology and Biotechnology, 2018, 102 (13), pp.5569-5583. ⟨10.1007/s00253-018-9018-1⟩
Article dans une revue hal-02323767v1
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Synthesis of Branched-Chain Sugars with a DHAP-Dependent Aldolase: Ketones are Electrophile Substrates of Rhamnulose-1- phosphate Aldolases

Victor Laurent , Ekaterina Darii , Angelina Aujon , Marine Debacker , Jean-Louis Petit
Angewandte Chemie International Edition, 2018, 57 (19), pp.5467 - 5471. ⟨10.1002/anie.201712851⟩
Article dans une revue hal-02323732v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Yoann Seeleuthner , Samuel Mondy , Vincent Lombard , Quentin Carradec , Eric Pelletier
Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩
Article dans une revue hal-01771839v1
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Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites

Nadia Perchat , Pierre-Loïc Saaidi , Ekaterina Darii , Christine Pellé , Jean-Louis Petit
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (19), pp.E4358-E4367. ⟨10.1073/pnas.1722368115⟩
Article dans une revue hal-02323695v1

Expanding the reaction space of aldolases using hydroxypyruvate as a nucleophilic substrate

Véronique de Berardinis , Christine Guérard-Hélaine , Ekaterina Darii , Karine Bastard , Virgil Hélaine
Green Chemistry, 2017, 19, pp.519-526. ⟨10.1039/C6GC02652D⟩
Article dans une revue hal-01540868v1

Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation

Damien Baud , Olivier Peruch , Pierre-Loïc Saaidi , Aurélie Fossey , Aline Mariage
Advanced Synthesis & Catalysis, 2017, 359 (9), pp.1563-1569. ⟨10.1002/adsc.201600934⟩
Article dans une revue hal-04167194v1
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Stereoselective synthesis of γ-hydroxy-α-amino acids through aldolase–transaminase recycling cascades

Christine Hélaine , Egon Heuson , Moussa Ndiaye , Léa Gourbeyre , Marielle Lemaire
Chemical Communications, 2017, 53 (39), pp.5465 - 5468. ⟨10.1039/C7CC00742F⟩
Article dans une revue hal-01650816v1

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

Karine Bastard , Alain Perret , Aline Mariage , Thomas Bessonnet , Agnès Pinet-Turpault
Nature Chemical Biology, 2017, 13, pp.858-866. ⟨10.1038/nchembio.2397⟩
Article dans une revue cea-02132779v1

Asymmetric reductive amination by a wild-type amine dehydrogenase from the thermophilic bacteria Petrotoga mobilis

Ombeline Mayol , Sylvain David , Ekaterina Darii , Adrien Debard , Aline Mariage
Catalysis Science & Technology, 2016, 6 (20), pp.7421-7428. ⟨10.1039/C6CY01625A⟩
Article dans une revue hal-04177990v1

Genome Mining for Innovative Biocatalysts: New Dihydroxyacetone Aldolases for the Chemist’s Toolbox

Christine Guérard-Hélaine , Véronique de Berardinis , Marielle Besnard-Gonnet , Ekaterina Darii , Marine Debacker
ChemCatChem, 2015, 7 (12), pp.1871-1879. ⟨10.1002/cctc.201500014⟩
Article dans une revue hal-02504106v1
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Novel metabolic features in $Acinetobacter\ baylyi$ ADP1 revealed by a multiomics approach

Lucille Stuani , Christophe Lechaplais , Aaro Salminen , Béatrice Ségurens , Maxime Durot
Metabolomics, 2014, 10 (6), pp.1223-1238. ⟨10.1007/s11306-014-0662-x⟩
Article dans une revue hal-04167345v1

Revealing the hidden functional diversity of an enzyme family

Karine Bastard , Adam Alexander Thil Smith , Carine Vergne-Vaxelaire , Alain Perret , Anne Zaparucha
Nature Chemical Biology, 2014, 10 (1), pp.42-49. ⟨10.1038/nchembio.1387⟩
Article dans une revue hal-02504067v1

Large α-aminonitrilase activity screening of nitrilase superfamily members: Access to conversion and enantiospecificity by LC–MS

Franck Bordier , Mark Stam , Ekaterina Darii , Sabine Tricot , Aurélie Fossey
Journal of Molecular Catalysis B: Enzymatic, 2014, 107, pp.79-88. ⟨10.1016/j.molcatb.2014.05.019⟩
Article dans une revue hal-02504052v1
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Synthesis of Mono- and Dihydroxylated Amino Acids with New $\alpha$-Ketoglutarate-Dependent Dioxygenases: Biocatalytic Oxidation of C$-$H Bonds

Damien Baud , Pierre-Loïc Saaidi , Adam Monfleur , Marine Harari , Julien Cuccaro
ChemCatChem, 2014, 6, pp.3012 - 3017. ⟨10.1002/cctc.201402498⟩
Article dans une revue cea-01591870v1

Nitrilase Activity Screening on Structurally Diverse Substrates: Providing Biocatalytic Tools for Organic Synthesis

Carine Vergne-Vaxelaire , Franck Bordier , Aurélie Fossey , Marielle Besnard-Gonnet , Adrien Debard
Advanced Synthesis and Catalysis, 2013, 355 (9), pp.1763-1779. ⟨10.1002/adsc.201201098⟩
Article dans une revue hal-02503873v1

Microbial urate catabolism: characterization of HpyO, a non-homologous isofunctional isoform of the flavoprotein urate hydroxylase HpxO

Magalie Michiel , Nadia Perchat , Alain Perret , Sabine Tricot , Aude Papeil
Environmental Microbiology Reports, 2012, pp.n/a-n/a. ⟨10.1111/j.1758-2229.2012.00390.x⟩
Article dans une revue hal-02503747v1

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

Maxime Durot , François Le Fevre , Véronique de Berardinis , Annett Kreimeyer , David Vallenet
BMC Systems Biology, 2008, 2 (1), pp.85. ⟨10.1186/1752-0509-2-85⟩
Article dans une revue hal-02503057v1

A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1

Véronique de Berardinis , David Vallenet , Vanina Castelli , Marielle Besnard , Agnès Pinet
Molecular Systems Biology, 2008, 4 (1), pp.174. ⟨10.1038/msb.2008.10⟩
Article dans une revue hal-02503013v1

New Insights into the Alternative d-Glucarate Degradation Pathway

Asadollah Aghaie , Christophe Lechaplais , Peggy Sirven , Sabine Tricot , Marielle Besnard-Gonnet
Journal of Biological Chemistry, 2008, 283 (23), pp.15638-15646. ⟨10.1074/jbc.M800487200⟩
Article dans une revue hal-02503047v1

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

O. Jaillon , J.-M. Aury , F. Brunet , J.L. Petit , N. Stange-Thomann
Nature, 2004, 431, pp.946-957. ⟨10.1038/nature03025⟩
Article dans une revue hal-00427605v1

Aldolases in sustainable processes: exploration of their nucleophile and electrophile substrate promiscuity

Marielle Lemaire , Christine Hélaine , Virgil Hélaine , Véronique de Berardinis , Marcel Salanoubat
the Multistep Enzyme Catalyzed Processes Congress (MECP18), Mar 2018, Trondheim, Norway
Communication dans un congrès hal-04351819v1

Large-scale exploration of aldolase biodiversity to discover novel biocatalysts: what’s new?

Véronique de Berardinis , Christine Guérard-Hélaine , Thierry Gefflaut , Ekaterina Darii , Marcel Salanoubat
27ÈME colloque du CBSO, Le Club Biocatalyse en Synthèse Organique, May 2018, Guidel, France
Communication dans un congrès cea-04345880v1

Aldolases and transaminases for amino alcohols synthesis

Thierry Gefflaut , Christine Guérard-Hélaine , Egon Heuson , Franck Charmantray , Virgil Hélaine
27ÈME colloque du CBSO, Le Club Biocatalyse en Synthèse Organique, May 2018, Guidel, France
Communication dans un congrès hal-04351825v1

Enzymatic cascades for the synthesis of amino alcohols

Anne Zaparucha , Damien Baud , Olivier Peruch , Pierre-Loic Saaidi , Aurélie Fossey
BIOTRANS, Jul 2017, Budapest (Hungary), Hungary
Communication dans un congrès hal-04303631v1

Nouvelle dioxygénases alpha-cetoglutarate dépendantes pour la synthèse de plateformes chirales

Anne Zaparucha , Damien Baud , Pierre-Loic Saaidi , Marine Harari , Julien Cuccaro
CBSO, Jun 2014, Carry Le Rouet, France
Communication dans un congrès hal-04303652v1

Large nitrilase activity screening on structurally diverse substrates: providing new biocatalytic tools for organic synthesis

Anne Zaparucha , Carine Vergne-Vaxelaire , Franck Bordier , Ekaterina Darii , Aurélie Fossey
BIOTRANS, Jul 2013, Manchester (UK), United Kingdom
Communication dans un congrès hal-04303622v1

Genome mining for expanding pyruvate aldolases scope.

C. Guerard-Helaine , V. Helaine , V. De Berardinis , M. Salanoubat , M. Lemaire
15th International Symposium on Biocatalysis and Biotransformations Biotrans 2021, Webinar, Jul 2021, Graz, Germany
Poster de conférence hal-03579554v1

New Advances in DERA Substrate Specificity.

V. Helaine , M. Lemaire , M. Salanoubat , V. De Berardinis , C. Guerard-Helaine
15th International Symposium on Biocatalysis and Biotransformations Biotrans 2021, Webinar, Jul 2021, Graz, Austria
Poster de conférence hal-03579568v1

Aldolase cascade reactions for dicarbonylated monosaccharide syntheses: highlight on quadruple acetaldehyde addition catalyzed by DERA

Christine Guérard-Hélaine , Victor Laurent , Virgil Hélaine , Marielle Lemaire , Jean-Louis Petit
14th Biotrans symposium, Jul 2019, Groningen, Netherlands
Poster de conférence hal-04354471v1

Aldolases from biodiversity: exploration of their substrates promiscuity

Marielle Lemaire , Victor Laurent , Christine Guérard-Hélaine , Virgil Hélaine , Marcel Salanoubat
14th Biotrans symposium, Jul 2019, Groningen, Netherlands
Poster de conférence hal-04354484v1

tertiary Alcohol Formation Catalysed by a Rhamnulose-1-PhosphateAldolase : Dendroketose-1-Phosphate Synthesis

Victor Laurent , Virgil Hélaine , Marielle Lemaire , Marcel Salanoubat , Véronique de Berardinis
John Whittal, Peter W Sutton. Applied Biocatalysis: The Chemist’s Enzyme Toolbox, Wiley, pp.241-247, 2020, 978-1-119-48701-2
Chapitre d'ouvrage hal-03033832v1