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Dominique Clermont

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Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage

Matan Shelomi , Chiao-Jung Han , Wen-Ming Chen , Hsin-Kuang Chen , Shwu-Jen Liaw
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (4), pp.005813. ⟨10.1099/ijsem.0.005813⟩
Journal articles pasteur-04110138v1
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Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays

Peter Kämpfer , André Lipski , Lucie Lamothe , D. Clermont , Alexis Criscuolo
Antonie van Leeuwenhoek, 2023, ⟨10.1007/s10482-023-01852-x⟩
Journal articles pasteur-04135943v1
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HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria

Cyril Planchais , Luis M Molinos-Albert , Pierre Rosenbaum , Thierry Hieu , Alexia Kanyavuz
Nature Communications, 2023, 14 (1), pp.6326. ⟨10.1038/s41467-023-42027-6⟩
Journal articles hal-04248132v1

Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays

Peter Kämpfer , André Lipski , John A Mcinroy , D. Clermont , Lucie Lamothe
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (4), pp.005808. ⟨10.1099/ijsem.0.005808⟩
Journal articles pasteur-04110096v1

Serratia silvae sp. nov., Isolated from Forest Soil

Gyu-Sung Cho , Estelle Mühle , Dominique Clermont , Charles Franz , Ludovic Besaury
Current Microbiology, 2023, 80 (4), pp.114. ⟨10.1007/s00284-023-03214-2⟩
Journal articles hal-04087205v1

Bacillus rhizoplanae sp. nov. from maize roots

Peter Kämpfer , André Lipski , John Mcinroy , Dominique Clermont , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (7), ⟨10.1099/ijsem.0.005450⟩
Journal articles pasteur-03791337v1
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Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root

Peter Kämpfer , André Lipski , Lucie Lamothe , Dominique Clermont , Alexis Criscuolo
Archives of Microbiology, 2022, 204 (10), pp.630. ⟨10.1007/s00203-022-03225-w⟩
Journal articles pasteur-03791319v1
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Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing

Iman Yassine , Sophie Lefèvre , Elisabeth E. Hansen , Corinne Ruckly , Isabelle Carle
Nature Communications, 2022, 13 (1), pp.551. ⟨10.1038/s41467-022-28121-1⟩
Journal articles pasteur-03694335v1
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Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere

Mathieu Cassarini , Caroline Rémond , Estelle Mühle , Dominique Clermont , Ludovic Besaury
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (9), pp.1-10. ⟨10.1099/ijsem.0.005480⟩
Journal articles pasteur-03791331v1

Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.

Peter Kämpfer , Stefanie P Glaeser , John A Mcinroy , D. Clermont , André Lipski
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (11), pp.005636. ⟨10.1099/ijsem.0.005636⟩
Journal articles pasteur-04110077v1

Sutcliffiella rhizosphaerae sp. nov. isolated from roots

Peter Kämpfer , Stefanie P Glaeser , André Lipski , John A Mcinroy , D. Clermont
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (10), pp.005590. ⟨10.1099/ijsem.0.005590⟩
Journal articles pasteur-04109954v1

Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere

Peter Kämpfer , Stefanie Glaeser , Hans-Jürgen Busse , John Mcinroy , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (5), ⟨10.1099/ijsem.0.005367⟩
Journal articles pasteur-03791340v1

Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays

Peter Kämpfer , Hans-Jürgen Busse , John Mcinroy , Dominique Clermont , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (10), ⟨10.1099/ijsem.0.005051⟩
Journal articles pasteur-03791388v1

Pseudomonas carbonaria sp. nov., isolated from charcoal

Peter Kämpfer , S. Glaeser , John Mcinroy , Dominique Clermont , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), ⟨10.1099/ijsem.0.004750⟩
Journal articles pasteur-03259701v1

Devosia equisanguinis sp. nov., isolated from horse blood

Peter Kämpfer , Hans-Jürgen Busse , Dominique Clermont , Alexis Criscuolo , Stefanie Glaeser
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (11), ⟨10.1099/ijsem.0.005090⟩
Journal articles pasteur-03791350v1
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Streptomyces silvae sp. nov., isolated from forest soil

Ludovic Besaury , Lucas Martinet , Estelle Mühle , Dominique Clermont , Caroline Rémond
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (12), pp.1-8. ⟨10.1099/ijsem.0.005147⟩
Journal articles pasteur-03791359v1

Leucobacter soli sp. nov., from soil amended with humic acid

Peter Kämpfer , John Mcinroy , Dominique Clermont , Meina Neumann-Schaal , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (12), ⟨10.1099/ijsem.0.005156⟩
Journal articles pasteur-03791356v1

Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter

Peter Schumann , Franziska Kalensee , Jialan Cao , Alexis Criscuolo , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), ⟨10.1099/ijsem.0.004769⟩
Journal articles pasteur-03259751v1

Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s

Estelle Mühle , Chloé Abry , Priscilla Leclerc , Gogoa-Marthe Goly , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (1), pp.004576. ⟨10.1099/ijsem.0.004576⟩
Journal articles pasteur-03082360v1
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Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersinia vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals

Anne-Sophie Le Guern , Cyril Savin , Hilde Angermeier , Sylvie Brémont , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2020, ⟨10.1099/ijsem.0.004417⟩
Journal articles pasteur-02936765v1

Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland

Mohaddaseh Ramezani , Mohammad Pourmohyadini , Mahdi Moshtaghi Nikou , Somaye Makzum , Peter Schumann
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (12), pp.6098-6105. ⟨10.1099/ijsem.0.004504⟩
Journal articles pasteur-03259720v1

Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981)

Paula García-Fraile , Cathrin Spröer , Olivier Chesneau , Alexis Criscuolo , Elke Lang
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (3), pp.1961-1962. ⟨10.1099/ijsem.0.003996⟩
Journal articles pasteur-03082408v1

Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato

Peter Kämpfer , Hans-Jürgen Busse , Peter Schumann , Alexis Criscuolo , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (3), pp.1963-1968. ⟨10.1099/ijsem.0.004002⟩
Journal articles pasteur-03259785v1
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Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination

Mathieu Dupré , Magalie Duchateau , Christian Malosse , Diogo Borges-Lima , Valeria Calvaresi
Journal of Proteome Research, 2020, ⟨10.1021/acs.jproteome.0c00351⟩
Journal articles pasteur-03014101v1

Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum

Peter Kämpfer , S. Glaeser , John Mcinroy , Jia Xu , Hans-Jürgen Busse
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (11), pp.5824-5831. ⟨10.1099/ijsem.0.004482⟩
Journal articles pasteur-03259727v1
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Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae

Peter Kämpfer , Rute Irgang , Stefanie P. Glaeser , Hans-Jürgen Busse , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2020, ⟨10.1099/ijsem.0.004510⟩
Journal articles pasteur-02975458v1

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid

Peter Kämpfer , Hans-Jürgen Busse , Alexis Criscuolo , Chantal Bizet , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (6), pp.1573-1578. ⟨10.1099/ijsem.0.003355⟩
Journal articles pasteur-03259872v1

Paracoccus haematequi sp. nov., isolated from horse blood

Peter Kämpfer , Hans-Jürgen Busse , Harald Galatis , Alexis Criscuolo , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (6), pp.1682-1688. ⟨10.1099/ijsem.0.003376⟩
Journal articles pasteur-03259877v1

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis

Peter Kämpfer , Chantal Bizet , Dominique Clermont , Alexis Criscuolo , Laura Kloepper
International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (5), pp.1438-1442. ⟨10.1099/ijsem.0.003334⟩
Journal articles pasteur-03259887v1

DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies

Kevin Washetine , Simon Heeke , Camille Ribeyre , Camille Bourreau , Corinne Normand
Biopreservation and Biobanking, 2019, 17 (4), pp.352-354. ⟨10.1089/bio.2018.0129⟩
Journal articles hal-02087894v1

The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines

Magne Bisgaard , Henrik Christensen , Dominique Clermont , Lenie Dijkshoorn , J Michael Janda
Diagnostic Microbiology and Infectious Disease, 2019, 95 (1), pp.102-103. ⟨10.1016/j.diagmicrobio.2019.03.007⟩
Journal articles pasteur-03259883v1

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii

Alexandr Nemec , Lenka Radolfová-Křížová , Martina Maixnerová , Matěj Nemec , Dominique Clermont
Systematic and Applied Microbiology, 2019, 42 (2), pp.159-167. ⟨10.1016/j.syapm.2018.10.004⟩
Journal articles pasteur-03259897v1

Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011

Peter Kämpfer , Hans-Jürgen Busse , Stefanie P Glaeser , Dominique Clermont , Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology, 2019, 71 (3), ⟨10.1099/ijsem.0.004745⟩
Journal articles pasteur-03253795v1

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid

Peter Kämpfer , Hans-Jürgen Busse , John A. Mcinroy , Alexis Criscuolo , Dominique Clermont
International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (7), pp.2070-2075. ⟨10.1099/ijsem.0.003434⟩
Journal articles pasteur-03259867v1
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Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)

Alexis Criscuolo , Olivier Chesneau , Dominique Clermont , Chantal Bizet
Genome Announcements , 2018, 6 (14), pp.e00222-18. ⟨10.1128/genomeA.00222-18⟩
Journal articles pasteur-03082421v1

Psychrobacter Pasteurii and Psychrobacter Piechaudii Sp. Nov., Two Novel Species Within the Genus Psychrobacter

Raquel Hurtado-Ortiz , Anissa Nazimoudine , Alexis Criscuolo , Perrine Hugon , Damien Mornico
International Journal of Systematic and Evolutionary Microbiology, 2017, 67 (9), pp.3192-3197. ⟨10.1099/ijsem.0.002065⟩
Journal articles pasteur-02612610v1

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: a reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group

Eugene Christo-Foroux , Tatiana Vallaeys , Valentin Loux , Elie Dassa , Josef Deutscher
Systematic and Applied Microbiology, 2017, 40 (7), pp.401-410. ⟨10.1016/j.syapm.2017.07.002⟩
Journal articles hal-01604275v1
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Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

Amandine Perrin , Elise Larsonneur , Ainsley Nicholson , David Edwards , Kristin Gundlach
Nature Communications, 2017, 8 (1), pp.15483. ⟨10.1038/ncomms15483⟩
Journal articles hal-02613118v1
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Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Elisabeth Njamkepo , Nizar Fawal , Alicia Tran-Dien , Jane Hawkey , Nancy Strockbine
Nature Microbiology, 2016, 1 (4), pp.16027. ⟨10.1038/NMICROBIOL.2016.27⟩
Journal articles pasteur-01422023v1
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Synthesis and evaluation of original bioisosteres of bacterial type IIA topoisomerases inhibitors

Stéphanie Petrella , Alexandra Aubry , Geneviève Janvier , Eloi P. Coutant , Alex Cartier
Canadian Journal of Chemistry, 2016, 94 (3), pp.240-250. ⟨10.1139/cjc-2015-0475⟩
Journal articles pasteur-01386561v1

Paenibacillus faecis sp. nov., isolated from human faeces

Dominique Clermont , Maite Gomard , Sylviane Hamon , Isabelle Bonne , José-Carlos Fernandez
International Journal of Systematic and Evolutionary Microbiology, 2015, 65 (12), pp.4621-4626. ⟨10.1099/ijsem.0.000622⟩
Journal articles pasteur-02445699v1

Assessment of DNA encapsulation, a new room-temperature DNA storage method

Dominique Clermont , Sylvain Santoni , Safa Saker , Maite Gomard , Eliane Gardais
Biopreservation and Biobanking, 2014, 12 (3), pp.176-183. ⟨10.1089/bio.2013.0082⟩
Journal articles hal-01268667v1

Identification of 50 Class D β-Lactamases and 65 Acinetobacter-Derived Cephalosporinases in Acinetobacter spp.

Bruno Périchon , Sylvie Goussard , Violaine Walewski , Lenka Krizova , Gustavo Cerqueira
Antimicrobial Agents and Chemotherapy, 2014, 58 (2), pp.936-949. ⟨10.1128/AAC.01261-13⟩
Journal articles pasteur-03262680v1
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Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

Violette Da Cunha , Mark R. Davies , Pierre-Emmanuel Douarre , Isabelle Rosinski-Chupin , Immaculada Margarit
Nature Communications, 2014, 5, pp.Article 4544. ⟨10.1038/ncomms5544⟩
Journal articles pasteur-01299769v1
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The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Marie Touchon , Jean Cury , Eun-Jeong Yoon , Lenka Krizova , Gustavo C Cerqueira
Genome Biology and Evolution, 2014, 6 (10), pp.2866-82. ⟨10.1093/gbe/evu225⟩
Journal articles pasteur-01132634v1

Draft genome sequences of five strains of [i]Lactobacillus acidophilus[/i] , strain CIP 76.13 T , isolated from humans, strains CIRM-BIA 442 and CIRM-BIA 445, isolated from dairy products, and strains DSM 20242 and DSM 9126 of unknown origin

Hélène Falentin , Sylvie Cousin , Dominique Clermont , Sophie Creno , Florence Ma
Genome Announcements, 2013, 1 (4), pp.e00658-13. ⟨10.1128/genomeA.00658-13⟩
Journal articles hal-01209470v1
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Draft genome sequence of Lactobacillus hominis strain CRBIP 24.179τ, isolated from human intestine

Sylvie Cousin , Sophie Creno , Laurence Ma , Dominique Clermont , Valentin Loux
Genome Announcements, 2013, 1 (4), pp.1. ⟨10.1128/genomeA.00662-13⟩
Journal articles hal-00939673v1
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Draft Genome Sequence of [i][/i] Lactobacillus pasteurii[i][/i] CRBIP 24.76T.

Sylvie Cousin , Dominique Clermont , Sophie Creno , Laurence Ma , Valentin Loux
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00660-13⟩
Journal articles hal-01190531v1
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Draft genome sequences of Lactobacillus equicursoris CIP 110162τ and Lactobacillus sp. strain CRBIP 24.137, isolated from thoroughbred racehorse feces and human urine, respectively

Sylvie Cousin , Valentin Loux , Laurence Ma , Sophie Creno , Dominique Clermont
Genome Announcements, 2013, 1 (4), pp.1-2. ⟨10.1128/genomeA.00663-13⟩
Journal articles hal-02645656v1

The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide

Sophie Viaud , Fabiana Saccheri , Gregoire Mignot , Takahiro Yamazaki , Romain Daillere
Science, 2013, 342 (6161), pp.971-976. ⟨10.1126/science.1240537⟩
Journal articles hal-01204279v1

Listeria rocourtiae sp. nov

A Leclercq , D Clermont , Chantal Bizet , Pa Grimont , A Le Fleche-Mateos
International Journal of Systematic and Evolutionary Microbiology, 2010, pp.Inconnu
Journal articles hal-02663151v1

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

Elena P Ivanova , Richard Christen , Chantal Bizet , Dominique Clermont , Laurence Motreff
International Journal of Systematic and Evolutionary Microbiology, 2009, 59 (Pt 10), pp.2476-81. ⟨10.1099/ijs.0.009654-0⟩
Journal articles hal-00484170v1
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Identification of Strains of Alcaligenes and Agrobacterium by a Polyphasic Approach

Dominique Clermont , Christine Harmant , Chantal Bizet
Journal of Clinical Microbiology, 2001, 39 (9), pp.3104 - 3109. ⟨10.1128/jcm.39.9.3104-3109.2001⟩
Journal articles pasteur-03682046v1

New tetracycline resistance determinants coding for ribosomal protection in streptococci and nucleotide sequence of tet(T) isolated from Streptococcus pyogenes A498.

D. Clermont , Olivier Chesneau , G de Cespédès , T Horaud
Antimicrobial Agents and Chemotherapy, 1997, 41 (1), pp.112-116. ⟨10.1128/AAC.41.1.112⟩
Journal articles pasteur-03082487v1

BRC-LIMS : applications for the management of French Biological Resource Centres of Microorganisms

S. Demey , E. Begaud , N Chaïbi , J.M. Gallais , E. Raynal-Melchy
International Network "Paving the way for Research on Global Health and One Health", Institut Pasteur [Paris]. FRA., Sep 2014, Paris, France
Conference papers hal-01204407v1

Evaluation of the diversity of two specis of the genus Propionibacterium : Mass spectrometry versus triple -locus sequence analysis

Florence Valence , P. Bouvet , Julien Jardin , Marion Dalmasso , L. Motreff
12 International Conference on Culture Collections, Sep 2010, Florianópolis, Santa Catarina, Brazil
Conference papers hal-01454351v1